Epigenetics, a mode for plants to respond to abiotic stresses

Epigenetics has been becoming a hot topic in recent years.It can be mechanisms that regulate gene expression without changing DNA base sequence.In plants epigenetic regulation has been implicated to be...     

The plant cytoskeleton takes center stage in abiotic stress responses and resilience

Stress resilience behaviours in plants are defensive mechanisms that develop under adverse environmental conditions to promote growth, development and yield. Over the past decades, improving stress resilience, especially in crop species, has been a focus of intense research for global food security and economic growth. Plants have evolved specific mechanisms to sense external stress and transmit information to the cell interior and generate appropriate responses. Plant cytoskeleton, comprising microtubules and actin filaments, takes a center stage in stress-induced signalling pathways, either as a direct target or as a signal transducer. In the past few years, it has become apparent that the function of the plant cytoskeleton and other associated proteins are not merely limited to elementary processes of cell growth and proliferation, but they also function in stress response and resilience. This review summarizes recent advances in the role of plant cytoskeleton and associated proteins in abiotic stress management. We provide a thorough overview of the mechanisms that plant cells employ to withstand different abiotic stimuli such as hypersalinity, dehydration, high temperature and cold, among others. We also discuss the crucial role of the plant cytoskeleton in organellar positioning under the influence of high light intensity.     

Transgenic plants tolerant to abiotic stresses

The publications containing data on the generation and study of transgenic plants tolerant to various types of abiotic stresses were analyzed. Mechanisms of plant protection against stresses and genes encoding a wide spectrum of compounds that confer the ability to survive under stress conditions, which cause inhibition of development and are even lethal to control plants are also discussed.     

The roles of selenium in protecting plants against abiotic stresses

Selenium (Se), an essential element for animals and humans, has also been found to be beneficial to plants. In some countries around the world, such as China and Egypt, Se deficiency in the diet is a common problem. To counteract this problem, Se compounds have been used to increase the Se content in the edible parts of crops, through foliar sprays or base application of fertilizers. Se has also been shown to counteract various abiotic stresses induced in plants by cold, drought, high light, water, salinity and heavy metals (metalloids) (HMs), but the associated mechanisms are rather complicated and still remain to be fully elucidated. In this paper, we have focused on reviewing the effects of Se on HM-induced stress in plants, with an emphasis on the potential roles of Se compounds (e.g., selenite and selenate) in conferring tolerance against abiotic stresses. Numerous studies have implicated Se in the following mechanisms: the regulation of reactive oxygen species (ROS) and antioxidants, the inhibition of uptake and translocation of HM, changes in the speciation of HM and finally, rebuilding of the cell membrane and chloroplast structures and recovery of the photosynthetic system. In addition, two other mechanisms may be involved along with the established ones described above. Firstly, it may affect by regulating the uptake and redistribution of elements essential in the antioxidative systems or in maintaining the ion balance and structural integrity of the cell. Secondly, it may interfere with electron transport by affecting the assembly of the photosynthesis complexes. Future relevant studies should be increasingly focused on the changes in the cellular distribution of HM, the formation of Se–HM complexes, the substitution of S by the incorporation of Se into Se-Fe clusters and the relationships between Se, Fe, S and lipid peroxidation.     

Cytokinin action in response to abiotic and biotic stresses in plants

The phytohormone cytokinin was originally discovered as a regulator of cell division. Later, it was described to be involved in regulating numerous processes in plant growth and development including meristem activity, tissue patterning, and organ size. More recently, diverse functions for cytokinin in the response to abiotic and biotic stresses have been reported. Cytokinin is required for the defence against high light stress and to protect plants from a novel type of abiotic stress caused by an altered photoperiod. Additionally, cytokinin has a role in the response to temperature, drought, osmotic, salt, and nutrient stress. Similarly, the full response to certain plant pathogens and herbivores requires a functional cytokinin signalling pathway. Conversely, different types of stress impact cytokinin homeostasis. The diverse functions of cytokinin in responses to stress and crosstalk with other hormones are described. Its emerging roles as a priming agent and as a regulator of growth‐defence trade‐offs are discussed.     

Brassinosteroids and their role in response of plants to abiotic stresses

Brassinosteroids (BRs) are polyhydroxylated steroidal plant hormones that play pivotal role in the regulation of various plant growth and development processes. BR biosynthetic or signaling mutants clearly indicate that these plant steroids are essential for regulating a variety of physiological processes including cellular expansion and proliferation, vascular differentiation, male fertility, timing senescence, and leaf development. Moreover, BRs regulate the expression of hundreds of genes, affect the activity of numerous metabolic pathways, and help to control overall developmental programs leading to morphogenesis. On the other hand, the potential application of BRs in agriculture to improve growth and yield under various stress conditions including drought, salinity, extreme temperatures, and heavy metal (Cd, Cu, Al, and Ni) toxicity, is of immense significance as these stresses severely hamper the normal metabolism of plants. Keeping in mind the multifaceted role of BRs, an attempt has been made to cover the various aspects mediated by BRs particularly under stress conditions and a possible mechanism of action of BRs has also been suggested.     

The chromosomal passenger complex takes center stage during mitosis

The chromosomal passenger complex plays important roles in key mitotic events, including chromosome bi-orientation, the spindle assembly checkpoint, and cytokinesis. Two groups now report the identification of a novel component of the Incenp/survivin/auroraB complex (Gassmann et al., 2004; Sampath et al., 2004) and show that different subcomplexes may exist during mitosis. Exciting data support the involvement of the passenger complex in yet another key event, the assembly of the mitotic spindle.     

Microarray: gateway to unravel the mystery of abiotic stresses in plants

Environmental factors, such as drought, salinity, extreme temperature, ozone poisoning, metal toxicity etc., significantly affect crops. To study these factors and to design a possible remedy, biological experimental data concerning these crops requires the quantification of gene expression and comparative analyses at high throughput level. Development of microarrays is the platform to study the differential expression profiling of the targeted genes. This technology can be applied to gene expression studies, ranging from individual genes to whole genome level. It is now possible to perform the quantification of the differential expression of genes on a glass slide in a single experiment. This review documents recently published reports on the use of microarrays for the identification of genes in different plant species playing their role in different cellular networks under abiotic stresses. The regulation pattern of differentially-expressed genes, individually or in group form, may help us to study different pathways and functions at the cellular and molecular level. These studies can provide us with a lot of useful information to unravel the mystery of abiotic stresses in important crop plants.     

Avenues of the membrane transport system in adaptation of plants to abiotic stresses

Abstract

Abiotic stress imposed by many factors such as: extreme water regimes, adverse temperatures, salinity, and heavy metal contamination result in severe crop yield losses worldwide. Plants must be able to quickly respond to these stresses in order to adapt to their growing conditions and minimize metabolic losses. In this context, transporter proteins play a vital role in regulating stress response mechanisms by facilitating movement of a variety of molecules and ions across the plasma membrane in order to maintain fundamental cellular processes such as ion homeostasis, osmotic adjustment, signal transduction, and detoxification. Aquaporins play a crucial role in alleviating abiotic stress by transporting water and other small molecules to maintain cellular homeostasis. Similarly, other transporter families such as CDF, ZIP, ABC, NHX, HKT, SWEETs, TMTs, and ion channels also contribute to abiotic stress tolerance. Hormones and other signaling molecules are necessary to coordinate responses across different tissues and to precisely regulate molecular trafficking. The present review highlights the current understanding of how membrane transporters orchestrate stress responses in plants. It also provides insights about the importance of these sensing and adaptive mechanisms for ensuring improved sustainable crop production during unfavorable conditions. Finally, this review discusses future prospects for the use of computational tools in constructing signaling networks to improve our understanding of the behavior of transporters under abiotic stress.     

Lysophospholipids in the limelight: autotaxin takes center stage

Lysophosphatidic acid (LPA) is a serum phospholipid that evokes growth factor-like responses in many cell types through the activation of its G protein-coupled receptors. Although much is known about LPA signaling, it has remained unclear where and how bioactive LPA is produced. Umezu-Goto et al. (2002)(this issue, page 227) have purified a serum lysophospholipase D that generates LPA from lysophosphatidylcholine and found it to be identical to autotaxin, a cell motility-stimulating ectophosphodiesterase implicated in tumor progression. This result is surprising, as there was previously no indication that autotaxin could act as a phospholipase.     

Complex molecular mechanisms determine fitness of plants to biotic and abiotic stresses

The mode of growth and development of plants does not allow them to change their habitat upon stress imposition. Through the course of evolution, plants have acquired complex molecular pathways to deal with abiotic and biotic factors to ensure their survival. The changing climatic conditions have led to unprecedented weather patterns resulting in increased crop losses. Similarly, the spread of pathogens in an era of increasing international trade has resulted in introduction and adaptation of these pathogens to new areas and cause frequent epidemics. There is an increasing need to understand the molecular mechanisms underlying stress responses in plants and envision ways to develop new crop varieties with improved features.

     

Towards understanding how molecular networks evolve in plants

Residing beneath the phenotypic landscape of a plant are intricate and dynamic networks of genes and proteins. As evolution operates on phenotypes, we expect its forces to shape somehow these underlying molecular networks. In this review, we discuss progress being made to elucidate the nature of these forces and their impact on the composition and structure of molecular networks. We also outline current limitations and open questions facing the broader field of plant network analysis.     

Dynamic regulation of DNA methylation and histone modifications in response to abiotic stresses in plants

DNA methylation and histone modification are evolutionarily conserved epigenetic modifications that are crucial for the expression regulation of abiotic stress-responsive genes in plants. Dynamic changes in gene expression levels can result from changes in DNA methylation and histone modifications. In the last two decades, how epigenetic machinery regulates abiotic stress responses in plants has been extensively studied. Here, based on recent publications, we review how DNA methylation and histone modifications impact gene expression regulation in response to abiotic stresses such as drought, abscisic acid, high salt, extreme temperature, nutrient deficiency or toxicity, and ultraviolet B exposure. We also review the roles of epigenetic mechanisms in the formation of transgenerational stress memory. We posit that a better understanding of the epigenetic underpinnings of abiotic stress responses in plants may facilitate the design of more stress-resistant or -resilient crops, which is essential for coping with global warming and extreme environments.     

Sugar signalling and gene expression in relation to carbohydrate metabolism under abiotic stresses in plants

Sucrose is required for plant growth and development. The sugar status of plant cells is sensed by sensor proteins. The signal generated by signal transduction cascades, which could involve mitogen-activated protein kinases, protein phosphatases, Ca²⁺ and calmodulins, results in appropriate gene expression. A variety of genes are either induced or repressed depending upon the status of soluble sugars. Abiotic stresses to plants result in major alterations in sugar status and hence affect the expression of various genes by down- and up-regulating their expression. Hexokinase-dependent and hexokinase-independent pathways are involved in sugar sensing. Sucrose also acts as a signal molecule as it affects the activity of a proton-sucrose symporter. The sucrose transporter acts as a sucrose sensor and is involved in phloem loading. Fructokinase may represent an additional sensor that bypasses hexokinase phosphorylation especially when sucrose synthase is dominant. Mutants isolated on the basis of response of germination and seedling growth to sugars and reporter-based screening protocols are being used to study the response of altered sugar status on gene expression. Commoncis-acting elements in sugar signalling pathways have been identified. Transgenic plants with elevated levels of sugars/sugar alcohols like fructans, raffinose series oligosaccharides, trehalose and mannitol are tolerant to different stresses but have usually impaired growth. Efforts need to be made to have transgenic plants in which abiotic stress responsive genes are expressed only at the time of adverse environmental conditions instead of being constitutively synthesized.     

Inhibitors of proteolytic enzymes under abiotic stresses in plants (review)

Data on the role of proteolytic enzyme inhibitors in plant adaptation to various unfavorable environmental abiotic factors--water deficiency, salinization of soil, extreme temperatures, etc.--and also probable functions of proteinases inhibitors in natural plant senescense are considered.     

Transgenic <Emphasis Type="Italic">Arabidopsis</Emphasis> and tobacco plants overexpressing an aquaporin respond differently to various abiotic stresses

Despite the high isoform multiplicity of aquaporins in plants, with 35 homologues including 13 plasma membrane intrinsic proteins (PIPs) in Arabidosis thaliana, the individual and integrated functions of aquaporins under various physiological conditions remain unclear. To better understand aquaporin functions in plants under various stress conditions, we examined transgenic Arabidopsis and tobacco plants that constitutively overexpress Arabidopsis PIP1;4 or PIP2;5 under various abiotic stress conditions. No significant differences in growth rates and water transport were found between the transgenic and wild-type plants when grown under favorable growth conditions. The transgenic plants overexpressing PIP1;4 or PIP2;5 displayed a rapid water loss under dehydration stress, which resulted in retarded germination and seedling growth under drought stress. In contrast, the transgenic plants overexpressing PIP1;4 or PIP2;5 showed enhanced water flow and facilitated germination under cold stress. The expression of several PIPs was noticeably affected by the overexpression of PIP1;4 or PIP2;5 in Arabidopsis under dehydration stress, suggesting that the expression of one aquaporin isoform influences the expression levels of other aquaporins under stress conditions. Taken together, our results demonstrate that overexpression of an aquaporin affects the expression of endogenous aquaporin genes and thereby impacts on seed germination, seedling growth, and stress responses of the plants under various stress conditions. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.