Phylodynamics and human-mediated dispersal of a zoonotic virus

Understanding the role of humans in the dispersal of predominantly animal pathogens is essential for their control. We used newly developed Bayesian phylogeographic methods to unravel the dynamics and determinants of the spread of dog rabies virus (RABV) in North Africa. Each of the countries studied exhibited largely disconnected spatial dynamics with major geopolitical boundaries acting as barriers to gene flow. Road distances proved to be better predictors of the movement of dog RABV than accessibility or raw geographical distance, with occasional long distance and rapid spread within each of these countries. Using simulations that bridge phylodynamics and spatial epidemiology, we demonstrate that the contemporary viral distribution extends beyond that expected for RABV transmission in African dog populations. These results are strongly supportive of human-mediated dispersal, and demonstrate how an integrated phylogeographic approach will turn viral genetic data into a powerful asset for characterizing, predicting, and potentially controlling the spatial spread of pathogens.     

Estimating relative population size included within protected areas

We propose and test a method to determine the proportion of specific animal national populations included in a network of protected areas. The proposed method further allows identifying the best potential new sites to be included in the network, to reach target population sizes and so to test whether a network extension is realistic or not. We used data from the French Breeding Bird Survey (BBS) and spatial interpolation models known as kriging to predict the relative abundance of species at a national scale. We applied the proposed methodology to Special Protection Areas (SPAs) and a sample of 20 bird species concerned by the Directive of the Council of the European Community on the Conservation of Wild Birds. We estimated which relative part of the national population is included within the boundaries of all national SPAs. Our results suggest that the current SPA network is probably not efficient to ensure favorable national conservation status for the most widespread species, but allows reaching a 5% target value for more localized ones. Consequently, we discuss the limit of such a protected area network to ensure the global conservation of widespread species, and therefore the need for other large-scale conservation measures.     

Integration of exotic seeds into an Azorean seed dispersal network

Seed dispersal plays a central role in plant ecology. Among animals, birds are particularly important seed dispersers, often incorporating exotic plants into their diets and facilitating their integration in the communities. Network theory offers a highly informative framework to study the structural and functional attributes of complex interactions networks. We used information from bird fecal samples to build a quantitative seed dispersal network for the last fragment of native laurel forest in the island of São Miguel—Azores with three specific objectives: (1) to assess the integration of exotic seeds into seed dispersal; (2) to evaluate the impact of exotic plants in network structure; (3) to test the potential of an exotic species to reduce the seed dispersal of a co-occurring native, via competition for seed dispersers. The seed dispersal network was based on the analysis of 1,121 droppings and described 74 unique interactions between 41 plant species and 7 bird species. Exotic seeds deeply infiltrated into the seed dispersal network forming the majority (59 %) of seeds in the droppings and including those of three globally invasive plants. Overall, birds depended equally on native and exotic fruits despite the lower abundance of the latter in the study area. In an experiment, birds did not show a preference for fruits of the exotic Leycesteria formosa over the native Vaccinium cylindraceum consuming them equally. However, the presence of the exotic plant negatively affected the number of native seeds dispersed, by diverting some of the consumers of the native fruits. Taken altogether the results reveal an alarming invasion level of seed dispersal systems in one of the last remnant native forests of the Azores.     

The diversity and origin of exotic ants arriving in New Zealand via human-mediated dispersal

The number of exotic ant species being dispersed to new regions by human transportation and the trade pathways responsible for this are poorly understood. In this study, the taxonomic diversity, trade pathways, and origin of exotic ants intercepted at the New Zealand border were examined for the period 1955–2005. Overall, there were a total 4355 interception records, with 115 species from 52 genera. The 10 most frequently intercepted genera, and the 20 most frequently intercepted species contributed > 90% of all records. Many of the species frequently intercepted are regarded as invasive species, and several are established in New Zealand. The most intercepted species was Pheidole megacephala . Despite a relatively low trade relationship, a high proportion (> 64%) of the exotic ants which were intercepted originated from the Pacific region. However, the majority of species intercepted from the Pacific was exotic to the region (71%), or to a lesser extent, wide-ranging Pacific native species. No endemic species from the Pacific were intercepted. The effectiveness of detecting exotic ant species at the New Zealand border ranged from 48–78% for different trade pathways, indicating a number of species remain undetected. Trade routes associated with specific geographical regions represent a major filter for the arrival of exotic ant species. Despite the importance of the Pacific as a frequent pathway, we suggest that the future establishment of exotic ant species in New Zealand is likely to be mitigated by a renewed focus on trade routes with cool temperate regions, particularly Australia.     

Estimating occupancy of Chinese pangolin (Manis pentadactyla) in a protected and non‐protected area of Nepal

Chinese pangolin is the world's most heavily trafficked small mammal for luxury food and traditional medicine. Although their populations are declining worldwide, it is difficult to monitor their population status because of its rarity and nocturnal behavior. We used site occupancy (presence/absence) sampling of pangolin sign (i.e., active burrows) in a protected (Gaurishankar Conservation Area) and non‐protected area (Ramechhap District) of central Nepal with multiple environmental covariates to understand factors that may influence occupancy of Chinese pangolin. The average Chinese pangolin occupancy and detection probabilities were  ± SE = 0.77 ± 0.08;  ± SE = 0.27 ± 0.05, respectively. The detection probabilities of Chinese pangolin were higher in PA (  ± SE = 0.33 ± 0.03) than compared to non‐PA (  ± SE = 0.25 ± 0.04). The most important covariates for Chinese pangolin detectability were red soil (97%), food source (97.6%), distance to road (97.9%), and protected area (97%) and with respect to occupancy was elevation (97.9%). We recommended use of remote cameras and potentially GPS collar surveys to further investigate habitat use and site occupancy at regular intervals to provide more reliable conservation assessments.     

Estimating tree and stand sapwood area in spatially heterogeneous southeastern Australian forests

Aims Natural and anthropogenic changes in forests can have important influences on transpiration and water production. Understanding the effects of increasing disturbances, due for example to climate change and forest harvesting, requires detailed information on how forest density and structural attributes relate to transpiration. Mean annual transpiration of eucalypt forest communities is often strongly correlated with total cross-sectional sapwood area. Our aim was to test an efficient method for estimating sapwood area at 1.3 m height (SA 1.3) in a large number of trees to understand the spatial heterogeneity of tree and stand sapwood area within and between forest communities, and develop allometric relationships that predict SA 1.3 with forest inventory data. We also apply tree competition models to determine the degree to which the relationship between SA 1.3 and tree basal area at 1.3 m height (BA 1.3) is influenced by competition.Methods We visited 25 recently harvested southeastern Australian forest sites consisting of 1379 trees and 5 Eucalyptus species to evaluate a new efficient data collection method for estimating SA 1.3 with tree taper and stump dimensions data using mixed effects models. The locations of 784 stumps within one 5-ha site were accurately mapped using an unmanned aerial vehicle (UAV), and four distance-dependent tree competition models were applied across the site to explain within-stand variation in the ratio of SA 1.3 to BA 1.3. Data from 24 additional sites, consisting of ten 15 m radial plots per site, were used to analyse within-site variation in R Ha (the ratio of stand sapwood area SA Ha to stand basal area BA Ha). The radial plots were merged within each site to evaluate between-site variations in R Ha across the landscape. For predicting SA Ha with forest inventory data, we computed the relationship between SA Ha and a new index of total stem perimeter per hectare, defined as ? B A H a N T, where N T is tree stocking density.Important findings Our 1379 measured stems represent the most comprehensive measure of sapwood area, surpassing the 757 measured stems in native eucalypt forests published in literature. The species-specific R Ha varied considerably across sites and therefore extrapolating SA Ha with spatially distributed BA Ha maps and a generalized R Ha would introduce local uncertainty. We found that the species-specific stem perimeter index was more effective at capturing variability in SA Ha across the landscape using forest composition, structure and density data (R 2 : 0.72–0.77). The strong correlation between tree SA 1.3 and BA 1.3 improved slightly using tree competition models (R 2 increased from 0.86 to 0.88). Relating SA Ha to routinely measured forest inventory attributes within permanent plots and Light Detection and Ranging (LiDAR) data may provide opportunities to map forest water use in time and space across large areas disturbed by wildfire and logging.     

Estimating historical commercial rock lobster (Jasus edwardsii) catch inside Australian State territorial waters for marine protected area assessment: the binomial likelihood method

The rock lobster (Jasus edwardsii) fishery of South Australia is the State’s most valuable fisheries resource with an export value exceeding ~AU$100 million. The fishery operates primarily inshore (<60 m), and overlaps with a series of marine protected areas (MPAs) currently proposed for State territorial waters. As a result, the need to quantify the impact of proposed MPAs on commercial landings of rock lobster within territorial waters is an integral part of the MPA assessment process. Removing fishing effort displaced by MPAs prevents a corresponding increase in exploitation outside protected zones. We describe a binomial likelihood method that utilises historical commercial catch data to estimate catch totals of rock lobster inside South Australian State waters. Lobster catches per km² showed a high level of spatial variation with estimated historical lobster catch in State waters spanning approximately three orders of magnitude. The method identified key areas where high lobster catch (up to 500 kg/km²) overlapped with State waters. Binomial likelihood outputs have particular application to the estimation of net catch loss in situations where fishery buy-back or financial compensation are a considered option as part of the MPA implementation process.     

Long-distance dispersal of tree seeds by wind

Some mechanisms that promote long-distance dispersal of tree seeds by wind are explored. Winged seeds must be lifted above the canopy by updrafts to have a chance of further dispersal in high velocity horizontal winds aloft or in landscape-scale convection cells. Shear-induced turbulent eddies of a scale up to one-third of canopy height provide a lifting mechanism. Preliminary data suggest that all seeds of a given species may be viable candidates for uplift and long-distance dispersal, despite the evidence that slow-falling seeds are dispersed farther under any given wind conditions. Turbulence is argued more often and more extensively to advance long-distance dispersal than to retard it. Seeds may take advantage of Bernoulli sailing to move with faster than average winds. Elasticity of branches and trees may play a role in regulating the release of seeds into unusually favorable winds. Dispersal is at least biphasic, and the study of long-distance dispersal calls for mixed models and mixed methods of gathering data.     

Human-mediated dispersal of seeds over long distances

Human activities have fundamental impacts on the distribution of species through altered land use, but also directly by dispersal of propagules. Rare long-distance dispersal events have a disproportionate importance for the spread of species including invasions. While it is widely accepted that humans may act as vectors of long-distance dispersal, there are few studies that quantify this process. We studied in detail a mechanism of human-mediated dispersal (HMD). For two plant species we measured, over a wide range of distances, how many seeds are carried by humans on shoes. While over half of the seeds fell off within 5m, seeds were regularly still attached to shoes after 5 km. Semi-mechanistic models were fitted, and these suggested that long-distance dispersal on shoes is facilitated by decreasing seed detachment probability with distance. Mechanistic modelling showed that the primary vector, wind, was less important as an agent of long-distance dispersal, dispersing seeds less than 250 m. Full dispersal kernels were derived by combining the models for primary dispersal by wind and secondary dispersal by humans. These suggest that walking humans can disperse seeds to very long distances, up to at least 10 km, and provide some of the first quantified dispersal kernels for HMD.     

Arrival of an Australian anguillid eel in New Zealand: an example of transoceanic dispersal

Anguilla reinhardtii, hitherto known from eastern Australia, New Caledonia, Norfolk Island, and Lord Howe Island, has recently been discovered in rivers of northern New Zealand. Identification, based on morphological and genetic characteristics, is unequivocal; eight consecutive year classes have been found. The only reasonable explanation of this occurrence is transoceanic dispersal to New Zealand, probably from subtropical oceanic spawning grounds north of New Zealand. This corroborates past hypotheses that the strongly diadromous freshwater fish fauna of New Zealand is derived by transoceanic dispersal of known marine life intervals. This revised version was published online in July 2006 with corrections to the Cover Date.     

Movement patterns of temperate wrasses (Labridae) within a small marine protected area

The movement patterns of three commercially important wrasse (Labridae) species inside a small marine protected area (~ 0.15 km²) on the west coast of Norway were analysed over a period of 21 months. The mean distance between capture and recapture locations varied between 10 and 187 m, and was species and season specific. The extent of movement was not related to body size or sex. These results imply that a network of small strategically located marine protected areas can be used as management tools to protect wrasses from size- and sex-selective fishing mortality.     

Evidence for human-mediated dispersal of exotic earthworms: support for exploring strategies to limit further spread

As potent ecosystem engineers, non-native earthworms are altering the fundamental structure and function of previously earthworm-free cold-temperate hardwood forests in North America. Discarded earthworms used for fishing bait has been presumed to be an important vector for the continued spread of non-native earthworms because epicentres of invasion often include boat landings, lakeshores and roads. However, controversy has remained about the overall importance of human-mediated spread vs. natural expansion of established earthworm populations. In this issue of Molecular Ecology , Cameron et al . explore the continued role of humans in dispersing non-native earthworms.     

Adaptations for animal dispersal of one-seed juniper seeds

Summary Distributional patterns of one-seed juniper seeds and seedlings show that most seeds are found directly beneath source trees but most seedlings are found away from the source trees. Thus, seeds dispersed away from source trees seem to have a better chance of germination and growth than seeds beneath source trees. Seed distribution patterns indicate haphazard animal dispersal rather than directional dispersal by water runoff or gravity. One-seed juniper appears to have adaptations favoring zoochory over other types of dispersal methods. Seeds are not well protected from animals but are presented in an attractive, abundant, easily accessible and nutritious fruit. Fruit ripening occurs just before the arrival of avian winter residents in the piñon-juniper woodlands. Several of these species are potential dispersal agents. Seeds passed through the intestines of Townsend's Solitaires showed lowered germination compared to untreated seeds but these birds are probably good dispersers.     

Impacts of cattle grazing on forest structure and raptor distribution within a neotropical protected area

Uncontrolled cattle grazing is frequent in protected areas across the tropics but its effect on habitat structure and biodiversity is poorly known. We used generalized additive models to examine the precise relationships between cattle grazing intensity, vegetation structure, and raptor occurrence and richness across 39 1-km² plots within the North West Biosphere Reserve, Peru. Cattle grazing was widespread and intensity was negatively correlated with average canopy height and percentage of vegetation cover at 5–15 m. Raptors were influenced by cattle density but they were probably more strongly influenced by canopy and sub-canopy characteristics. Raptor species responded differently to increasing cattle density: presence of species that hunted or searched for food in open habitats increased with cattle density, while presence of range restricted species that hunted from perches, and declining species decreased. Moderate cattle densities (20–60 cows km^?2) may actually benefit some raptor species and help to maintain the high raptor diversity in the study area. Reserve authorities should, however, act to reduce cattle densities in some areas, which can exceed 120 cows km^?2, that seriously affect some key raptor species, and cause forest to be converted to permanent cattle pasture.     

Leaf area index (LAI) map of a protected area within the caldera of Vico Lake (Italy)

ABSTRACT

Structural traits of the vegetation types and plantations occurring in a protected area within the caldera of Vico Lake (Italy) were analysed. There were significant correlations among structural traits, at leaf and stand level. Leaf area index (LAI) and specific leaf area (SLA) were the most significantly correlated traits. LAI rose according to stand plant density, tree size and SLA; the highest LAI value monitored in the Fagus sylvatica L. forest was justified by the largest tree size (28.9±2.8 m height and 53±15 cm diameter) and the highest SLA (212±23 cm² g^-1). The main traits determining the variations in leaf structure among species were analysed by Principal Component Analysis (PCA). The LAI values were used to realise a map allowing us to delimit high LAI values (4.1–5.0), corresponding to the F. sylvatica forest and to the F. sylvatica forest with the sporadic presence of Quercus cerris L. and Castanea sativa Miller, mean LAI values (classes 3.1–4.0) corresponding to Corylus avellana L. plantations and to the Phragmites australis (Cav.) Trin. vegetation type, low LAI values (classes 2.6–3.0) corresponding to Q. cerris forests and C. sativa plantations.     

Interspecific variation in extraction of buried seeds within an assemblage of sparrows

Most North American sparrows forage almost exclusively on herbaceous seeds during the winter months. Limited availability of surface seeds forces some birds to scratch for seeds buried beneath soil, snow, or litter. Artificial seed trays were used to test the ability of five different sparrow species to extract seeds buried at different depths in soil. The results suggest three functional groups based on relative scratching ability. Strong scratchers, which included eastern towhee and song and white-throated sparrows, met or exceeded their energetic requirements when foraging on seeds buried at all depths (down to a maximum depth of 1.50–2.25 cm). A weak scratching species, Savannah sparrow, scratched with the same frequency as the strong scratchers, but experienced negative energy budgets when forced to forage on sub-surface seeds. Finally, a non-scratching species, field sparrow, failed to extract any buried seeds. Level of scratching ability may influence foraging efficiency at low resource densities. As a result, interspecific differences in scratching ability may contribute to habitat selection. Strong scratchers may be adapted to foraging near woody vegetation where intense resource competition and abundant litter limit the availability of surface seeds. Weak scratchers, on the other hand, may be forced to feed away from areas where surface seeds are limited. Since woody vegetation serves as a primary source of protective cover in early successional habitats, a tradeoff between foraging efficiency and the risk of predation may promote the local coexistence of species that differ in relative scratching ability and adaptations to evading predators.     

Secondary dispersal mechanisms of winged seeds: a review

Winged seeds, or samaras, are believed to promote the long‐distance dispersal and invasive potential of wind‐dispersed trees, but the full dispersive potential of these seeds has not been well characterised. Previous research on the ecology of winged seeds has largely focussed on the initial abscission and primary dispersal of the samara, despite it being known that the primary wind dispersal of samaras is often over short distances, with only rare escapes to longer distance dispersal. Secondary dispersal, or the movement of the seeds from the initial dispersal area to the site of germination, has been largely ignored despite offering a likely important mechanism for the dispersal of samaras to microhabitats suitable for establishment. Herein, we synthesise what is known on the predation and secondary dispersal of winged seeds by multiple dispersive vectors, highlighting gaps in knowledge and offering suggestions for future research. Both hydrochory and zoochory offer the chance for samaroid seeds to disperse over longer distances than anemochory alone, but the effects of the wing structure on these dispersal mechanisms have not been well characterised. Furthermore, although some studies have investigated secondary dispersal in samaroid species, such studies are scarce and only rarely track seeds from source to seedling. Future research must be directed to studying the secondary dispersal of samaras by various vectors, in order to elucidate fully the invasive and colonisation potential of samaroid trees.