综述与专论: 鸣禽模型在语言学习中承担独特的生物学角色

鸣禽鸣唱与人类语言相似，是一种复杂的发声学习行为，并受脑中一组相互联系的神经核团调控。该组核团与人类发声控制相关脑区具有一定程度的结构同源性，并可能共享某些发声学习调控机制。因此，鸣禽成为研究发声学习神经机理的重要模式动物，不仅对鸟类语言学习，也可为揭示人类语言学习的神经过程和语言障碍的治疗提供重要参考借鉴。本文基于本课题组长期坚持的研究方向，较系统地概述了国内外鸣禽鸣唱行为研究的历史、重要发现和进展，及其为相关中枢神经系统疾病治疗带来的启示。     

AHL类似物作为细菌群体感应系统促进剂的研究进展

应用N-酰基高丝氨酸内酯（N-acyl-L-homoserine lactones，AHL）介导的群体感应（quorum sensing，QS）系统调控生物膜形成和次级代谢物合成具有巨大的商业价值，但自然界中许多微生物能够产生群体淬灭（Quorum Quenching，QQ）酶，QQ酶能够降解天然AHL信号分子，使外源天然 AHL 信号分子的半衰期缩短，限制了天然AHL 信号分子的应用范围。化学合成的AHL类似物作为QS促进剂，通过与天然信号分子类似的结合方式形成转录二聚体，激活下游基因表达，但与天然AHL信号分子相比，化学合成的QS促进剂具有活性高、半衰期长等优点。本文综述了化学合成AHL类似物的设计思路、种类、作用机制及其在提高次级代谢物产量和生物浸矿方面的应用，并讨论了QS促进剂今后主要的研究方向，以期为QS促进剂的合成设计和实际应用提供参考。     

Quorum Sensing Signal Production and Microbial Interactions in a Polymicrobial Disease of Corals and the Coral Surface Mucopolysaccharide Layer

Black band disease (BBD) of corals is a complex polymicrobial disease considered to be a threat to coral reef health, as it can lead to mortality of massive reef-building corals. The BBD community is dominated by gliding, filamentous cyanobacteria with a highly diverse population of heterotrophic bacteria. Microbial interactions such as quorum sensing (QS) and antimicrobial production may be involved in BBD disease pathogenesis. In this study, BBD (whole community) samples, as well as 199 bacterial isolates from BBD, the surface mucopolysaccharide layer (SML) of apparently healthy corals, and SML of apparently healthy areas of BBD-infected corals were screened for the production of acyl homoserine lactones (AHLs) and for autoinducer-2 (AI-2) activity using three bacterial reporter strains. AHLs were detected in all BBD (intact community) samples tested and in cultures of 5.5% of BBD bacterial isolates. Over half of a subset (153) of the isolates were positive for AI-2 activity. AHL-producing isolates were further analyzed using LC-MS/MS to determine AHL chemical structure and the concentration of (S)-4,5-dihydroxy-2,3-pentanedione (DPD), the biosynthetic precursor of AI-2. C6-HSL was the most common AHL variant detected, followed by 3OC4-HSL. In addition to QS assays, 342 growth challenges were conducted among a subset of the isolates, with 27% of isolates eliciting growth inhibition and 2% growth stimulation. 24% of BBD isolates elicited growth inhibition as compared to 26% and 32% of the bacteria from the two SML sources. With one exception, only isolates that exhibited AI-2 activity or produced DPD inhibited growth of test strains. These findings demonstrate for the first time that AHLs are present in an active coral disease. It is possible that AI-2 production among BBD and coral SML bacteria may structure the microbial communities of both a polymicrobial infection and the healthy coral microbiome.     

基于空间生态特性的景观图式语言研究方法与方法论

图式语言是基于景观空间的生态特性而建立的一种表达景观地方性和空间逻辑的新范式,是以图式为基本语言符号研究景观空间由基本空间、复合空间到整体景观空间的基本语汇与基本逻辑关系,并为塑造新景观提供语汇、语法等图式语言体系的支撑。图式语言研究是采用了景观空间原型与高效空间、空间选择与样本分析、空间抽象与图式提取、图式语汇与空间逻辑以及图式语言体系构建与验证的研究方法。图式语言的研究方法是基于结构主义与解构主义、自组织协同理论与逻辑设计、空间生成过程与空间推理以及景观的多重表意与语用学等方法论基础之上的。图式语言的研究方法和方法论基础是景观空间的系统性、有机性和演变性决定的,是多学科研究方法和方法论的综合。     

Seasonal Periodicity in Lacustrine Phytoplankton and the Theory of Ecological Succession

An attempt has been made to examine the extent to which seasonal periodicity of lacustrine phytoplankton corresponds to the general concepts of the theory of ecological succession. The study was carried out on an eutrophic lake (Aydat, France). As REYNOLDS (1980, 1984) suggests, the seasonal periodicity of phytoplankton is an autogenic succession which may be perturbed by allogenic physical processes that change the initial direction of the succession. Thus, in this lake, only spring succession of phytoplankton can be considered as a true succession, consistent with the theory of ecological succession in that it was a directional and predictable phenomenon leading to an increasing complexity of community.     

细菌群体感应的信号转导机制及其对抗生素生产的影响

摘要：细菌的群体感应是一种群体行为调控机制。自然界中的很多细菌都有这种能力,即分泌一种或多种信号分子,通过这些信号分子的浓度来感知菌群密度,调控一系列相应靶基因的表达。在这些受调控的基因中,备受关注的是信号分子对抗生素生产的调节。本文综述了群体感应机制的最新研究进展和它对抗生素生产的调节,尤其对洋葱伯克霍尔德菌(Burkholderia. cepacia)进行了较为详细的探讨。     

Metarhizium robertsii Produces an Extracellular Invertase (MrINV) That Plays a Pivotal Role in Rhizospheric Interactions and Root Colonization

As well as killing pest insects, the rhizosphere competent insect-pathogenic fungus Metarhizium robertsii also boosts plant growth by providing nitrogenous nutrients and increasing resistance to plant pathogens. Plant roots secrete abundant nutrients but little is known about their utilization by Metarhizium spp. and the mechanistic basis of Metarhizium-plant associations. We report here that M. robertsii produces an extracellular invertase (MrInv) on plant roots. Deletion of MrInv (⊿MrInv) reduced M. robertsii growth on sucrose and rhizospheric exudates but increased colonization of Panicum virgatum and Arabidopsis thaliana roots. This could be accounted for by a reduction in carbon catabolite repression in ⊿MrInv increasing production of plant cell wall-degrading depolymerases. A non-rhizosphere competent scarab beetle specialist Metarhizium majus lacks invertase which suggests that rhizospheric competence may be related to the sugar metabolism of different Metarhizium species.     

Interactions of Physical,Chemical and Biological Processes in Depth and Time within a Productive English Lake during Summer Stratification

A survey is given of physical, chemical and biological events in the water-mass of a productive lake (Esthwaite Water, N. England) during summer stratification. They are interrelated in terms of i) responses to meteorological changes (ii) susceptibility to density stratification (iii) participation in acid-base and redox systems, with interactions of these (iv) modification due to the generation of particulate material from soluble precursors (v) limiting factors in such bio-generation (vi) mechanisms of internal nutrient loading, and (vii) control by the characteristics of individual plankters. The significance is demonstrated of differential inputs of meteorological variables, and especially of biological production and degradation, for determining the overall structure and metabolism of the lake.     

Septin 11 Is Present in GABAergic Synapses and Plays a Functional Role in the Cytoarchitecture of Neurons and GABAergic Synaptic Connectivity

Mass spectrometry and immunoblot analysis of a rat brain fraction enriched in type-II postsynaptic densities and postsynaptic GABAergic markers showed enrichment in the protein septin 11. Septin 11 is expressed throughout the brain, being particularly high in the spiny branchlets of the Purkinje cells in the molecular layer of cerebellum and in the olfactory bulb. Immunofluorescence of cultured hippocampal neurons showed that 54 ± 4% of the GABAergic synapses and 25 ± 2% of the glutamatergic synapses had colocalizing septin 11 clusters. Similar colocalization numbers were found in the molecular layer of cerebellar sections. In cultured hippocampal neurons, septin 11 clusters were frequently present at the base of dendritic protrusions and at the bifurcation points of the dendritic branches. Electron microscopy immunocytochemistry of the rat brain cerebellum revealed the accumulation of septin 11 at the neck of dendritic spines, at the bifurcation of dendritic branches, and at some GABAergic synapses. Knocking down septin 11 in cultured hippocampal neurons with septin 11 small hairpin RNAs showed (i) reduced dendritic arborization; (ii) decreased density and increased length of dendritic protrusions; and (iii) decreased GABAergic synaptic contacts that these neurons receive. The results indicate that septin 11 plays important roles in the cytoarchitecture of neurons, including dendritic arborization and dendritic spines, and that septin 11 also plays a role in GABAergic synaptic connectivity.We have recently developed a method for the preparation of a brain fraction enriched in GABAergic postsynaptic complex (1). This fraction, insoluble in Triton X-100, was enriched in Gray''s type-II postsynaptic densities (type-II PSDs)² and in the postsynaptic GABAergic markers GABA_A receptors (GABA_ARs) and gephyrin. Here we report that septin 11 is a major component of the type-II PSD fraction.Septins are a family of proteins with GTPase activity that form heterooligomeric filaments and ringlike structures that act as diffusion barriers and scaffolds. Septins are involved in cytokinesis, positioning of the mitotic spindle, cellular morphology, vesicle trafficking, apoptosis, neurodegeneration, and neoplasia (2–5). In mammals, 14 septin genes have been identified. Each septin gene is expressed in several spliced forms. Although most septins are highly expressed in the brain (6), only recently is their role in neuronal function (7–9) and in neuropathology (10–14) is beginning to be addressed for some septins.Septin 11 is expressed in various tissues, including the brain (15), but little is known about the role of septin 11 in the brain. Septins 3, 5, 6, and 7 are localized in the presynaptic terminals, frequently associated with synaptic vesicles (6, 16, 17). In neurons, septin 11 forms heterooligomeric complexes with septin 7 and septin 5 (9, 18). Nevertheless, the regional and developmental distribution of septin 11 in the brain and in hippocampal cultures is not identical to that of septin 7 or septin 5 (8). These results and other heterooligomerization studies show that septin 11 is not always associated with septin 7 and septin 5 (7, 15, 19). Thus, septin 11 is expected to have functional properties both similar to and different from those of septin 7 and other septins that heterooligomerize with septin 11. In the present paper, we show that septin 11 is associated with the GABAergic synapses, particularly with the postsynapse, and concentrates at the neck of dendritic spines in the intact brain. Others have recently shown that another septin (septin 7) accumulates at the base of dendritic protrusions of cultured neurons (8, 9). However, it is not known whether septins also accumulate at the base of the dendritic spines in the brain. To the best of our knowledge, this is the first time that (i) a septin has been shown to be associated with GABAergic synapses and (ii) a septin has been shown to concentrate at the neck of dendritic spines and dendritic branching points in the intact brain.     

Integrated Succinylome and Metabolome Profiling Reveals Crucial Role of S-Ribosylhomocysteine Lyase in Quorum Sensing and Metabolism of Aeromonas hydrophila,

1. Download : Download high-res image (69KB)
2. Download : Download full-size image

Highlights

• •A global lysine succinylome was investigated in A. hydrophila.
• •The lysine succinylation modifications play crucial role on various metabolic pathways.
• •Reversible succinylation on Lys23 and Lys30 regulates the activity of S-ribosylhomocysteine lyase LuxS.
• •Lysine succinylation modifications of LuxS affect quorum sensing and metabolism.

     

Ecological consequences of a manual reduction of roach and bream in a eutrophic,temperate lake

Hydrobiologia - A biomanipulation experiment was carried out in the eutrophic lake, Frederiksborg Slotssø (Denmark). During 1987 and 1988, densities of roach (Rutilus rutilus) and bream...     

Dicer Is Required for Maintenance of Adult Pancreatic Acinar Cell Identity and Plays a Role in Kras-Driven Pancreatic Neoplasia

The role of miRNA processing in the maintenance of adult pancreatic acinar cell identity and during the initiation and progression of pancreatic neoplasia has not been studied in detail. In this work, we deleted Dicer specifically in adult pancreatic acinar cells, with or without simultaneous activation of oncogenic Kras. We found that Dicer is essential for the maintenance of acinar cell identity. Acinar cells lacking Dicer showed increased plasticity, as evidenced by loss of polarity, initiation of epithelial-to-mesenchymal transition (EMT) and acinar-to-ductal metaplasia (ADM). In the context of oncogenic Kras activation, the initiation of ADM and pancreatic intraepithelial neoplasia (PanIN) were both highly sensitive to Dicer gene dosage. Homozygous Dicer deletion accelerated the formation of ADM but not PanIN. In contrast, heterozygous Dicer deletion accelerated PanIN initiation, revealing complex roles for Dicer in the regulation of both normal and neoplastic pancreatic epithelial identity.