Multispectroscopic DNA-binding studies of a terbium(III) complex containing 2,2′-bipyridine ligand

Agarose gel electrophoresis, absorption, fluorescence, viscosity, and circular dichroism (CD) have been used in exploring the interaction of terbium(III) complex, [Tb(bpy)₂Cl₃(OH₂)] where bipy is 2,2′-bipyridine, with Fish salmon DNA. Agarose gel electrophoresis assay, along with absorption and fluorescence studies, reveal interaction between the corresponding complex and FS-DNA. Also, the binding constants (K_b) and the Stern–Volmer quenching constants (K_sv) of Tb(III) complex with FS-DNA were determined. The calculated thermodynamic parameters suggested that the binding of mentioned complex to FS-DNA was driven mainly by hydrophobic interactions. A comparative study of this complex with respect to the effect of iodide-induced quenching, ionic strength effect, and ethidium bromide exclusion assay reflects binding of explicit to the FS-DNA primarily in a groove fashion. CD and viscosity data also support the groove binding mode. Furthermore, Tb(III) complex have been simultaneously screened for their antibacterial and antifungal activities.     

Synthesis,crystal structure,and DNA-binding properties of a new copper (II) complex containing mixed-ligands of 2,2′-bipyridine and p-methylbenzoate

A novel copper complex of [Cu(bpy)(pba)₂ · H₂O] · 0.5H₂O (bpy = 2,2′-bipyridine, pba = p-methylbenzoate) was synthesized. The interaction of the complex to native fish sperm DNA was investigated through electrochemistry, electronic absorption spectroscopy and viscosity experiments. In the X-ray crystallography structure, the copper (II) ion is coordinated by two oxygen atoms of two p-methylbenzoate groups, two nitrogen atoms of 2,2′-bipyridine and one water molecule. The observed changes in the physicochemical features of the copper (II) complex on binding to DNA suggested that the complex bind to DNA with intercalation mode via 2,2′-bipyridine ring into DNA base pairs. Electrochemical studies revealed that the complex prefer to bind to DNA in Cu(I) form rather than Cu(II) oxidation state form. Additionally, the nuclease activity of the title complex was assessed by gel electrophoresis assay and the results shown that the copper complex can cleave pBR322 DNA effectively in the presence of ascorbic acid.     

Photophysical studies of hetero-bischelated complexes of rhodium(III) containing 2,2′-dipyridylamine

Four mixed-ligand complexes, cis-Rh[(bipy)(HDPA)Cl₂]Cl (1), cis-[Rh(phen)(HDPA)Cl₂]Cl (2), cis-[Rh(bipy)(DPA)Cl₂] (3), and cis-[Rh(phen)(DPA)Cl₂] (4) (where bipy = 2,2′-bipyridine, phen = 1,10-phenantroline, HDPA = 2,2′-dipyridylamine, and DPA = the deprotonated form of 2,2′-dipyridylamine) have been synthesized and characterized. In slightly acidic solution and at low temperature (77 K), both complexes 1 and 2 show a broad, symmetric and structureless red emission with microsecond lifetime identified as dd* phosphorescence. In slightly basic solution, the deprotonated complexes (3 and 4) exhibit a broad and asymmetric blue emission, showing no vibrational structure with a lifetime in the order of microseconds. Emission of complex 3 reveals a blue shift of 0.81 μm⁻¹ compared to the emission of complex 1 and that of complex 4 shows a blue shift of 0.77 μm⁻¹ with respect to complex 2. Electrochemical data have also been obtained for the four complexes in CH₃CN. There are two reduction peaks observed for both complexes 1 and 2. Each peak is followed by a one-electron reduction at the metal, with an elimination of chloride during each reduction step, which is in consistent with the dd* phosphorescence assignment for the two complexes. For complexes 3 and 4, only a one-electron reduction process occurs at the metal with an elimination of chloride. Based on the luminescence and electrochemical data, the emission of complexes 3 and 4 are assigned as πd* phosphorescence. Results from density functional theory (DFT) calculations provide theoretical evidence in support of this πd* assignments.     

Complexes of platinum(II) containing 2,2′-bithiazoline and 2,2′-bipyrimidine as binucleating ligands

Dimethyl and diphenyl platinum(II) complexes containing binucleating α-diimine ligands BN (BN = 2,2′-bithiazoline and 2,2′-bipyrimidine) have been isolated and characterized. Electrophilic attack of mercuric chloride on the mononuclear compounds leads to binuclear systems of C_2v symmetry, with the two chelating moieties of the ligands occupied by platinum and mercury, respectively. ¹H NMR spectroscopy suggests a large transmission of electronic effects between the metals through the ligands.     

Anion recognition properties of 2,2′-bipyridine derivative receptors containing phenol group

A series of artificial 2,2′-bipyridine receptors (1, 2, 3) containing phenol group have been designed and synthesized. Their anion-binding properties are evaluated for various anions (F^?, Cl^?, Br^?, I^?, AcO^? and H₂PO₄^?) by UV-vis titration experiment in order to research the impact of different substituents on anion-recognition properties. Results indicate that the anion binding abilities can be tuned by electron push-pull properties of substituents on the phenyl ortho- or para-position of the receptors. In addition, receptor 1 is sensitive for F^? detection without the interference of other studied anions, and receptors 2 and 3 are sensitive for H₂PO₄^? detection.     

Carbonyl complexes of Rh(I), Ir(I) and Mo(0) containing substituted derivatives of 1,10-phenanthroline and 2,2′-bipyridine

The A₁ symmetry v_CO of the carbonyl complexes [Mo(chel)(CO)₄], [M(chel)(CO)₂] [PF₆] (M=Rh, Ir; chel=bipy, phen and substituted derivatives) are used for determining the electron donor-acceptor properties of the title ligands. The steric hindrance of the methyl groups in positions 2 and 9 of the phenanthroline favours the formation of Rh(I) and Ir(I) pentacoordinated derivatives.     

Kinetics of the oxidation of bromide ions by bis(2,2′-bipyridine)manganese(III) ions in aqueous perchlorate media

The kinetics of the oxidation of bromide ions by the bis(2,2′-bipyridine)manganese(III) ion have been investigated over a range of acid concentrations for several temperatures. Initial rates of reaction are measured and from their variation with [Mn^III] and [Br−] it is concluded that the observed order in [Mn(bipy)₂³⁺_aq] is one and that in [Br⁻] is intermediate between zero and one. It is shown kinetically that intermediate complexes between Mn^III and Br⁻ ions are involved and from the variation of the rate constant with acidity it is concluded that the decomposition of Mn(bipy)₂Br²⁺_aq is definitely involved as a rate controlling step and that the decomposition of the protonated complex Mn(bipy)(bipyH⁺)Br³⁺_aq is also probably involved as a rate controlling step. The kinetics and mechanism for this oxidation are compared with those found for other cations complexed with bipyridine, for aqua-cations and other complexes of Co^III.     

Effect of an acidic chelating agent in the synergic extraction systems of rare earth(III)β-diketones-2,2′-bipyridine

The extraction of rare earth elements (RE), La(m), Sm(III), Tb(III), Tm(III) and Lu(III), with four β-diketoncs (HA), hexafluoroacetylacetone (Hhfa), pivaloyltrifluoroacetone (Hpta), benzoyl- acetone (Hba) and acetylacetone (Hacac), in the presence or absence of 2,2′-bipyridine (bpy) in benzene was studied. The extraction constants (K_ex) for RE(III) with Hhfa, Hpta and Hacac were determined and compared with each other. The order of K_ex is Hacac < Hpta < Hhfa. The synergic enhancement observed in the presence of bpy is attributed to the 1:1 adduct formation such as RE(A)₃bpy, except for the La(III)-Hhfa system, in which La- (hfa)₃(bpy)₂ was also observed. The adduct formation constant, β_s,1, tor the β-diketones was in the order of Hacac < Hba < Hpta < Hhfa, which is in the same order as their acid dissociation constants. The trend of β_s,1 with the atomic number of RE is obviously different with different β-diketones; the β_s,1 for Hacac and Hba tends to decrease with increasing atomic numbers of RE, but those for Hpta and Hhfa increase.     

Phosphodiesterolytic activity of samarium(III) mixed ligand complexes containing crown ethers and α-amino acids

Phosphodiesterolytic activity of samarium complexes containing crown ethers and amino acids was systematically studied. Formation constants of mixed ligand Sm–crown ethers–amino acids complexes (crown ethers = 18-crown-6, 15-crown-5 and 12-crown-4 and amino acids = Gly and Arg) were determined at 37.0 °C and 0.50 M NMe₄Cl. Kinetics of the hydrolysis of BNPP (bis(4-nitrophenyl)phosphate) mediated by lanthanide(III)-mixed ligands complexes was studied under the same experimental conditions. The rate of BNPP cleavage is sensitive to metal ion concentration, pH, and ligand to metal molar ratio. Hydrolysis follows Michaelis–Menten-type saturation kinetics. High pH values markedly increase the observed activity. Potentiometric titrations results together with kinetic data of all these systems, under identical conditions, allowed us to identify the active species towards hydrolysis. Complexes with phosphodiesterolytic activity are monomeric hydroxylated cationic species. In general, a good phosphodiesterolytic activity is observed for these complexes under similar conditions to the physiological ones.     

Structure–activity relationships of the antimicrobial peptide gramicidin S and its analogs: Aqueous solubility,self-association,conformation, antimicrobial activity and interaction with model lipid membranes

GS10 [cyclo-(VKLdYPVKLdYP)] is a synthetic analog of the naturally occurring antimicrobial peptide gramicidin (GS) in which the two positively charged ornithine (Orn) residues are replaced by two positively charged lysine (Lys) residues and the two less polar aromatic phenylalanine (Phe) residues are replaced by the more polar tyrosine (Tyr) residues. In this study, we examine the effects of these seemingly conservative modifications to the parent GS molecule on the physical properties of the peptide, and on its interactions with lipid bilayer model and biological membranes, by a variety of biophysical techniques. We show that although GS10 retains the largely β-sheet conformation characteristic of GS, it is less structured in both water and membrane-mimetic solvents. GS10 is also more water soluble and less hydrophobic than GS, as predicted, and also exhibits a reduced tendency for self-association in aqueous solution. Surprisingly, GS10 associates more strongly with zwitterionic and anionic phospholipid bilayer model membranes than does GS, despite its greater water solubility, and the presence of anionic phospholipids and cholesterol (Chol) modestly reduces the association of both GS10 and GS to these model membranes. The strong partitioning of both peptides into lipid bilayers is driven by a large favorable entropy change opposed by a much smaller unfavorable enthalpy change. However, GS10 is also less potent than GS at inducing inverted cubic phases in phospholipid bilayer model membranes and at inhibiting the growth of the cell wall-less bacterium Acholeplasma laidlawii B. These results are discussed in terms of the comparative antibiotic and hemolytic activities of these peptides.     

Determination of pioglitazone hydrochloride by flow injection chemiluminescence tris(2,2′-bipyridyl)ruthenium(II)–silver(III) complex system

A novel flow injection-chemiluminescence (FI–CL) approach is proposed for the assay of pioglitazone hydrochloride (PG-HCl) based on its enhancing influence on the tris(2,2′-bipyridyl)ruthenium(II)–silver(III) complex (Ru(bipy)₃²⁺-DPA) CL system in sulfuric acid medium. The possible CL reaction mechanism is discussed with CL and ultraviolet (UV) spectra. The optimum experimental conditions were found as: Ru(bipy)₃²⁺, 5.0 × 10⁻⁵ M; sulfuric acid, 1.0 × 10⁻³ M; diperiodatoargentate(III) (DPA), 1.0 × 10⁻⁴ M; potassium hydroxide, 1.0 × 10⁻³ M; flow rate 4.0 ml min⁻¹ for each flow stream and sample loop volume, 180 μl. The CL intensity of PG-HCl was linear in the range of 1.0 × 10⁻³ to 5.0 mg L⁻¹ (R² = 0.9998, n = 10) with limit of detection [LOD, signal-to-noise ratio (S/N) = 3] of 2.2 × 10⁻⁴ mg L⁻¹, limit of quantification (LOQ, S/N = 10) of 6.7 × 10⁻⁴ mg L⁻¹, relative standard deviation (RSD) of 1.0 to 3.3% and sampling rate of 106 h⁻¹. The methodology was satisfactorily used to quantify PG-HCl in pharmaceutical tablets with recoveries ranging from 93.17 to 102.77 and RSD from 1.9 to 2.8%.     

Kinetics of Inhibition of Green Crab (Scylla Serrata) Alkaline Phosphatase by Sodium (2,2′-bipyridine) Oxodiperoxovanadate

Green crab (Scylla serrata) alkaline phosphatase (EC 3.1.3.1) is a metalloenzyme, which catalyzes the nonspecific hydrolysis of phosphate monoesters. The kinetics of inhibition of the enzyme by sodium (2, 2′-bipyridine) oxodiperoxovanadate, pV(bipy), has been studied. The time course of the hydrolysis of p-nitrophenyl-phosphate catalyzed by the enzyme in the presence of different pV(bipy) concentrations showed that at each pV(bipy) concentration, the rate decreased with increasing time until a straight line was approached, the straight line slopes are the same for all concentrations. The results suggest that the inhibition of the enzyme by pV(bipy) is a slow, reversible reaction with fractional remaining activity. The microscopic rate constants are determined for the reaction of inhibitor with the enzyme.     

A dimeric tris(2,2′-bipyridine)ruthenium(II) system: Emission spectrum and cyclic voltammogram

A dimeric ruthenium(II) compound in which two Ru(bpy)₃ groups are linked by an amide bonding has been prepared as a model compound to study an energy transfer between Ru(bpy)₃ chelates. The nature of the solution luminescence spectrum varied with concentration: the emission maximum appeared at 650 nm for dilute solutions and at 670 nm for concentrated solutions. This concentration dependence has been interpreted in terms of excimers that are formed due to an energy transfer between two Ru(bpy)₃ groups in a dimer molecule. The cyclic voltammogram for the Ru³⁺/Ru²⁺ reaction is quasireversible: the reaction is governed by a sluggish electron transfer which may be due to an intradimer electronic interaction.     

Chemico-biological interaction of Etravirine and its β-Cyclodextrin complex with macromolecular targets

The interaction of etravirine with β-cyclodextrin is analyzed by UV–visible absorption, infrared, fluorescence, nuclear magnetic resonance, two-dimensional rotational frame nuclear Overhauser effect spectroscopy, and molecular modeling studies. The 4-hydroxy-3, 5-dimethylbenzonitrile moiety is found to take part in the binding. The stoichiometry of the inclusion complex of ET with β-CD is 1:1 with the binding constant of 2.03 × 10³ mol^?1 dm³. The binding of ET with calf thymus DNA (ctDNA) and bovine serum albumin (BSA) protein is investigated in the presence and the absence of β-CD. Fluorescence enhancement is observed during the binding of ET with ctDNA in the absence of β-CD, whereas in the presence of β-CD, fluorescence quenching is observed. The binding constants of the binding of ET and ET–β-CD to ctDNA are 7.84 × 10⁴ and 4.38 × 10⁴ mol^?1 dm³, respectively. The binding constant of the binding of ET and ET–β-CD to BSA are 3.14 × 10⁴ and 1.6396 × 10⁴ mol^?1 dm³, respectively. The apparent binding constants between ET–β-CD complex and ctDNA or BSA protein decreases significantly. The numbers of binding sites of interaction of ET with BSA protein and the binding distance between BSA protein and ET the absence and the presence of β-CD differ. β-CD modulates the binding of ET with the macromolecular targets.     

Emission polarization study of the interaction of stellacyanin with tris(2, 2′-bipyridine)osmium(II)

The association of Os(bpy)₃²⁺ and stellacyanin was investigated by measuring the emission polarization of the excited state of the complex [*Os-(bpy)₃²⁺]. At high protein concentration (≥1 mM) Os(bpy)₃²⁺ appears to bind weakly to reduced stellacyanin and to oxidized stellacyanin to a lesser extent. These results are consistent with those obtained in a previous kinetic study on the redox quenching of *Ru(bpy)₃²⁺ by stellacyanin [1]. On excitation at 480 nm, the limiting polarization (P_o) of the *Os(bpy)₃²⁺ emission at 715 nm is 0.100. From P_o we concluded that (1) protein-bound Os(bpy)₃²⁺ has considerable rotational freedom independent of the protein-probe complex, and (2) the emission dipole of *Os(bpy)₃²⁺ is at ∼45° to the C₃ molecular axis.     

DFT-based molecular modeling and vibrational study of the La(III) complex of 3,3′-(benzylidene)bis(4-hydroxycoumarin)

Molecular modeling of the La(III) complex of 3,3′-(benzylidene)bis(4-hydroxycoumarin) (PhDC) was performed using density functional theory (DFT) methods at B3LYP/6-31G(d) and BP86/TZP levels. Both Stuttgart-Dresden effective core potential and ZORA approximation were applied to the La(III) center. The electron density distribution and the nucleophilic centers of the deprotonated ligand PhDC^2- in a solvent environment were estimated on the basis of Hirshfeld atomic charges, electrostatic potential values at the nuclei, and Nalewajski-Mrozek bond orders. In accordance with the empirical formula La(PhDC)(OH)(H₂O), a chain structure of the complex was simulated by means of two types of molecular fragment: (1) two La(III) cations bound to one PhDC^2- ligand, and (2) two PhDC^2- ligands bound to one La(III) cation. Different orientations of PhDC^2-, OH^- and H₂O ligands in the La(III) complexes were investigated using 20 possible [La(PhDC^2-)₂(OH)(H₂O)]^2- fragments. Energy calculations predicted that the prism-like structure based on “tail-head” cis-LML2 type binding and stabilized via HO...HOH intramolecular hydrogen bonds is the most probable structure for the La(III) complex. The calculated vibrational spectrum of the lowest energy La(III) model fragment is in very good agreement with the experimental IR spectrum of the complex, supporting the suggested ligand binding mode to La(III) in a chain structure, namely, every PhDC^2- interacts with two La(III) cations through both carbonylic and both hydroxylic oxygens, and every La(III) cation binds four oxygen atoms of two different PhDC^2-. Figure Low energy prism-like model fragment, [La(PhDC^2-)₂(OH)(H₂O)]^2-, optimized at BP86/TZP level of theory