Contents of a storage pit from late Bronze Age Stillfried,Austria: another record of the "new" glume wheat

Since Jones et al. (2000) drew attention to a "new" type of glume wheat from Neolithic and Bronze Age sites in northern Greece, several finds of this morphologically distinct tetraploid wheat form have been made across central and southeastern Europe. Charred remains of this wheat, dating from 819–1031 cal b.c., have also been discovered in a storage pit at late Bronze Age Stillfried, eastern Austria. As both chaff and grains were found, it was not only possible to match the diagnostic features of the spikelet bases to the "new" form, but also to examine the grains, which are strikingly long, slender and flat. A dorsal ridge is absent and there is no hump above the embryo. The embryo angle is relatively low and compression lines are much more distinct. Within the Stillfried store "new" glume wheat grains were also easily separable from two-grained einkorn and spelt grains. The morphology of the grains is not inconsistent with the suggestion that the "new" type glume wheat might correspond to modern Triticum timopheevi. In Stillfried "new" glume wheat was grown as a winter crop, and it seems to have been cultivated as a maslin (mixed crop) together with T. monococcum (einkorn).     

The white-line-in-agar test is not specific for the two cultivated mushroom associated pseudomonads, Pseudomonas tolaasii and Pseudomonas "reactans"

A sharply defined white line in vitro forms between the pathogenic form of Pseudomonas tolaasii and another Pseudomonas bacterium, referred to as "reactans". This interaction has been considered as highly specific. However, results presented in this study rise doubt about the strict specificity of this interaction, as some other pseudomonads, associated with the cultivated mushroom Agaricus bisporus, also yielded a white line precipitate when they were streaked towards Pseudomonas tolaasii LMG 2342T. Moreover, some Finnish isolates inducing brown blotch symptoms on mushrooms like P. tolaasii(T), produced a typical white precipitate when streaked towards P. "reactans" LMG5329, even though phenotypical and genotypical features exclude these isolates from the species P. tolaasii. We propose that the white-line-in-agar (WLA) test should no longer be considered as an unequivocal diagnostic trait of P. tolaasii.     

A "retrocidal" plasmid in Enterococcus faecalis: passage and protection

Enterococcus faecalis MC4 harbors a 130 kb conjugative, pheromone (cCF10)-responding plasmid, pAMS1, conferring chloramphenicol, streptomycin and tetracycline resistances. A plasmid-borne class IIa bacteriocin (MC4-1) determinant and cognate immunity gene were present, but not expressed in MC4. However, pAMS1 transfer to E. faecalis JH2-2 (but not to the non-isogenic OG1SS) generated the surprising ability to express bacteriocin activity against the plasmid donor, MC4. The bacteriocin target spectrum includes E. faecalis, Enterococcus faecium, Enterococcus gallinarum, Enterococcus hirae, and Listeria monocytogenes. Those donors unable to express bacteriocin or immunity could protect themselves from the "retrocidal" behavior of transconjugants by a switch to bacteriocin resistance at a frequency of approximately 10(-3). Reversion to sensitivity occurred at a relatively high frequency, suggestive of involvement of a phase variation event. These observations concerning a conjugative plasmid with novel "retrocidal" properties, coupled with a defense mechanism independent of plasmid-borne immunity functions, may relate to phenomena exploiting regulatory features with broader ecological and evolutionary implications.     

Taxonomic note "Lactobacillus pastorianus" (Van Laer, 1892) a former synonym for Lactobacillus paracollinoides

"Lactobacillus pastorianus" (Van Laer, 1892) is not a validly described species and is not included in the Approved List of Bacterial Names. The strain is available in multiple culture collections as Lactobacillus sp. DSM 20197, L. brevis ATCC 8291, "L. pastorianus" CECT 5926, L. brevis JCM 1113, and "L. pastorianus" LMG 11990. Nearly identical 16S rRNA sequences and protein encoding genes for 6-phosphogluconate dehydrogenase (99.9%) revealed this strain as L. paracollinoides. A 16S-23S rRNA intergenic spacer region-based PCR assay did not differentiate "L. pastorianus" DSM 20197 from L. paracollinoides DSM 15502(T). Highly similar RAPD profiles differentiated both strains below species level.     

Morphology and comparative ecology of the fairy ring fungi, <Emphasis Type="Italic">Vascellum curtisii</Emphasis> and <Emphasis Type="Italic">Bovista dermoxantha</Emphasis>, on turf of bentgrass,bluegrass, and Zoysiagrass

We identified the causal fungi of fairy rings as Vascellum curtisii and Bovista dermoxantha on the turf of bentgrass, bluegrass, and Zoysiagrass. Observing the fairy rings developed in the turfgrass study site in Chiba City for 5 years from 1998, V. curtisii, producing sporophores during June and November except midsummer, formed darker-green rings than the adjacent turf and withered the three kinds of turf. B. dermoxantha produced sporophores exclusively in midsummer. The fungus formed dark green rings on the three kinds of turf but withered only bentgrass and bluegrass. The optimum mycelial growth temperature of V. curtisii was 30°C. Whereas that of B. dermoxantha ranged between 35° and 40°C. The infection test of the fungi to the seedlings revealed that V. curtisii damaged Zoysiagrass more severely than bentgrass and that B. dermoxantha was more injurious to bentgrass than Zoysiagrass.     

An assessment of potential diatom "barcode" genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta)

Due to limited morphological differentiation, diatoms can be very difficult to identify and cryptic speciation is widespread. There is a need for a narrower species concept if contentious issues such as diatom biodiversities and biogeographies are to be resolved. We assessed the effectiveness of several genes (cox1, rbcL, 18S and ITS rDNA) to distinguish cryptic species within the model 'morphospecies', Sellaphora pupula agg. This is the first time that the suitability of cox1 as an identification tool for diatoms has been assessed. A range of cox1 primers was tested on Sellaphora and various outgroup taxa. Sequences were obtained for 34 isolates belonging to 22 Sellaphora taxa and three others (Pinnularia, Eunotia and Tabularia). Intraspecific divergences ranged from 0 to 5bp (=0.8%) and interspecific levels were at least 18bp (=c. 3%). Cox1 divergence was usually much greater than rbcL divergence and always much more variable than 18S rDNA. ITS rDNA sequences were more variable than cox1, but well-known problems concerning intragenomic variability caution against its use in identification. More information and less sequencing effort mean that cox1 can be a very useful aid in diatom identification. The usefulness of cox1 for determining phylogenetic relationships among Sellaphora species was also assessed and compared to rbcL. Tree topologies were very similar, although support values were generally lower for cox1.     

Intron and exon length variation in <Emphasis Type="Italic">Arabidopsis</Emphasis>, rice,nematode, and human

As determined by computer sequence analysis, the average exon length in Arabidopsis thaliana, Oryza sativa, Caenorhabditis elegans, and Homo sapiens genes decreases with an increasing number of introns. In A. thaliana and O. sativa, variations in intron and exon lengths with an increasing number of introns are highly correlated. Linear correlation is observed between the total exon length and the number of introns, while the gene length increases in proportion to the number of introns. In human, the average intron and gene lengths depended on the gene density in DNA.     

<Emphasis Type="Italic">Adrianichthys roseni</Emphasis> and <Emphasis Type="Italic">Oryzias nebulosus</Emphasis>, two new ricefishes (Atherinomorpha: Beloniformes: Adrianichthyidae) from Lake Poso,Sulawesi, Indonesia

Two new species of ricefishes or buntingi, Adrianichthys roseni and Oryzias nebulosus, are described from Lake Poso, Sulawesi Tengah, Indonesia, bringing to 12 the number of endemic ricefishes known from Sulawesi. Adrianichthys roseni and its sole congener, A. kruyti, are distinguished from other relatively large-bodied ricefishes, Xenopoecilus, in having orbits that project beyond the dorsal profile of the head; paired preethmoid cartilages (versus single or absent in Xenopoecilus); and 13–16 (versus 8–13) dorsal fin rays. Also, as in A. kruyti, the lower jaw of A. roseni is enclosed in the upper jaw when the mouth is closed; however, the upper jaw is not as large and broadly expanded as in A. kruyti. Adrianichthys roseni differs further from A. kruyti in having fewer scales in a lateral series (approximately 63–65 versus 70–75), attaining a smaller maximum recorded standard length (90mm versus 109mm), and having the lateral process of the pelvic bone in line with the fifth, rather than the eighth, pleural rib. Oryzias nebulosus shares with O. nigrimas, also from Lake Poso, a unique sexual dichromatism in preserved specimens: adult males are dark gray to black, whereas females are a lighter grayish-yellow to brown. Relative to O. nigrimas, O. nebulosus is a small species (maximum recorded SL 33mm versus 51mm), with pelvic fins relatively anterior (lateral process of pelvic bone is in line with the third, fourth, or fifth, modally fourth, rather than the fourth or fifth, modally fifth, pleural rib), dorsal fin relatively anterior (origin above the 12–14th anal fin ray as opposed to the 15–17th anal fin ray), precaudal vertebrae 11–13, modally 12 (versus 13–14, modally 13), and relatively straight, narrow and slender (as opposed to curved, broad, and robust) ossified and cartilaginous portions of the gill arches. Endemic buntingi are threatened by introduction of exotic species, overfishing, and pollution. A conservation plan includes rearing native fishes for local use as ornamental fishes and possible reintroduction.     

Foraging,Food Choice,and Food Processing by Sympatric Ripe-Fruit Specialists: <Emphasis Type="Italic">Lagothrix lagotricha poeppigii</Emphasis> and <Emphasis Type="Italic">Ateles belzebuth belzebuth</Emphasis>

Studies of interspecific competition and niche separation have formed some of the seminal works of ecology. I conducted an 18-mo study comparing the feeding ecologies of 2 sympatric, closely-related ripe-fruit specialists, Humboldt's woolly monkeys (Lagothrix lagotricha poeppigii), and the white-bellied spider monkeys (Ateles belzebuth belzebuth) in Amazonian Ecuador. Woolly monkeys in the terra firme forest live at roughly triple the density of spider monkeys (31 versus 11.5 animals/km²). Woolly monkeys spend 17% of their time foraging, while spider monkeys spend only 1% of their time foraging. Spider monkeys alone fed on soil and termitaria, which are rich in phosphorus. Woolly monkeys are not hard-fruit specialists. Their fruit diet is significantly more diverse than that of spider monkeys. Dietary overlap between the 2 species is high, yet each specializes to some degree on a different set of fruit resources. Woolly monkeys visit more food sources per unit of time, feed lower in the canopy, visit more small food patches, and prey on more seeds. Spider monkeys feed on fewer, richer food sources and are more than twice as likely to return to a particular fruit source than woolly monkeys are. Spider monkeys maximize fruit pulp intake, carrying more intact seeds in their guts, while woolly monkeys minimize seed bulk swallowed through more careful food processing. Surprisingly, several preferred spider monkey foods with high fat content and large seeds are avoided by woolly monkeys. I outline the different ecological dimensions involved in niche separation between the 2 species and discuss the possible impetus for their evolutionary divergence.     

Characterization of <Emphasis Type="Italic">Edwardsiella tarda rpoS</Emphasis>: effect on serum resistance,chondroitinase activity,biofilm formation,and autoinducer synthetases expression

In this study, rpoS gene was identified from Edwardsiella tarda EIB202 and its functional role was analyzed by using an in-frame deletion mutant ∆rpoS and the complemental strain rpoS ⁺. Compared with the wild type and rpoS ⁺, ∆rpoS was impaired in terms of the ability to survive under oxidative stress and nutrient starvation, as well as the resistance to 50% serum of Scophthalmus maximus in 3 h, demonstrating essential roles of RpoS in stress adaptation. The rpoS mutant also displayed markedly increased chondroitinase activity and biofilm formation. Real-time polymerase chain reaction revealed that the expression level of quorum sensing autoinducer synthetase genes luxS and edwI was increased by 3.7- and 2.5-fold in the rpoS mutant strain. Those results suggested that rpoS might be involved in the negative or positive regulation of chondroitinase and biofilm formation, or quorum sensing networks in E. tarda, respectively. Although there were no obvious differences between the wild-type and the rpoS mutant in adherence of epithelioma papulosum cyprini (EPC) cell and in the lethality on fish model, rpoS deletion leads to the drastically reduced capacity for E. tarda to internalize in EPC cells, indicating that RpoS was, while not the main, the factor required for the virulence network of E. tarda.     

Production of polyhydroxyalkanoates by <Emphasis Type="Italic">Azotobacter vinelandii</Emphasis> UWD using swine wastewater: Effect of supplementing glucose,yeast extract,and inorganic salts

This study examined the effect of adding glucose, yeast extract, and inorganic salts to swine wastewater (SWW) in a batch culture on the production of a biodegradable plastic, polyhydroxyalkanoate (PHA). A bacterial strain, Azotobacter vinelandii UWD, was used to produce PHA without limiting the non-carbon nutrients. The addition of glucose (30 g/L) to the SWW medium increased the level of cell growth (4.4∼7.0 times) and PHA production (3.8∼8.5 times) depending upon the dilution of SWW. A 50% dilution of SWW was found to be optimal considering the dry cell weight (9.40 g/L), PHA content (58 wt%), and hydroxyvalerate (HV) mol fraction in the PHA (4.3 mol%). A 75% SWW medium was more advantageous for producing PHA with a higher HV fraction (7.1 mol%) at the expense of losing 22% of PHA production. The undiluted SWW medium produced less than one third of the PHA compared with the 50% SWW medium, but the HV fraction was the highest (10.8 mol%). Regarding the effect of the glucose concentration, at 20 g/L glucose, the dry cell weight and level of PHA production increased to 9.34 g/L (0.63 g PHA/g dry cell weight) and 5.90 g/L, respectively. At 50 g/L glucose, there was no significant increase in PHA production. For the glucose-supplemented (30 g/L) 50% SWW medium, the addition of a nitrogen source (1 g/L of yeast extract) did not increase the level of cell growth or PHA production because the C:N ratio (23:1) was already close to the optimal value (22:1). Better aeration increased the productivity of PHA. External nitrogen supplements (1 g/L of yeast extract) and other essential mineral salts was not necessary for bacterial growth because they were contained in the SWW. These results suggest that SWW is an excellent feedstock for producing larger amounts of the value-added material, PHA, if it is combined with carbohydrate-rich organic waste.     

Further characterization of an aversive learning task in <Emphasis Type="Italic">Drosophila melanogaster</Emphasis>: intensity of the stimulus,relearning, and use of <Emphasis Type="Italic">rutabaga</Emphasis> mutants

Various learning tasks have been described in Drosophila melanogaster, flies being either tested in groups or at the individual level. Le Bourg and Buecher (Anim Learn Behav 33:330–341, 2002) have designed a task at the individual level: photopositive flies crossing a T-maze learn to prefer the dark exit when the lighted one is associated with the presence of aversive stimuli (humidity and quinine). Previous studies have reported various results (e.g. no effect of age) and the present article further characterizes this task by studying the possible effects of: (1) the intensity of the stimuli (quantity of water or concentration of quinine), (2) various delays between two learning sessions on the learning score at the second session, (3) the rutabaga learning mutation on the learning score. More concentrated quinine solutions increased learning scores but the quantity of water had no effect. Learning scores at the second session were higher with shorter delays between the two learning sessions and retrograde amnesia could decrease this memory score. rutabaga mutants showed learning deficits as in experiments testing groups of flies. This learning task could particularly be used to verify whether learning mutants isolated after experiments testing flies in groups display similar deficits when tested at the individual level.     

<Emphasis Type="Italic">Ambrosiella</Emphasis><Emphasis Type="Italic">beaveri,</Emphasis> sp. nov., Associated with an exotic ambrosia beetle, <Emphasis Type="Italic">Xylosandrus mutilatus</Emphasis> (Coleoptera: Curculionidae,Scolytinae), in Mississippi,USA

Xylosandrus mutilatus is an Asian ambrosia beetle that has recently established in Mississippi, Texas, Alabama, and possibly Florida, USA. We investigated the fungi associated with the mycangia (specialized fungus-transporting structures) of X. mutilatus in Mississippi. Mycangia consistently yielded an Ambrosiella sp. which was subsequently found to be closely related to, but distinct from, other Ambrosiella species affiliated with Ceratocystis. This Ambrosiella is described herein as Ambrosiella beaveri sp. nov. Also isolated were Geosmithia lavendula, G. obscura, and a yeast, Candida homelintoma. It is likely Ambrosiella beaveri was introduced along with the beetle into North America.     

Hammering,mauling, and kissing: stereotyped courtship behavior in <Emphasis Type="Italic">Cardiocondyla</Emphasis> ants

Sex appears to be a rather prosaic and casual event in the life of most social Hymenoptera. In contrast, mating in the ant genus Cardiocondyla is regularly preceded by a prolonged and stereotypic courtship display. Pummeling the head of the female with mandibles and / or antennae and vibrations of the gaster, presumably stridulation, are essential parts of male courtship. The overall structure of the mating pattern is conserved throughout species and between winged and wingless, “ergatoid” males, but exhibits species-specific idiosyncrasies. For example, C. elegans males regularly end the interaction with a female with a short mouth-to-mouth contact. Variation in the duration of the precopulatory phase and the copulation itself might reflect different degrees of inter- and intrasexual selection. More information on the dynamics of sperm transfer and the risk and intensity of sperm competition are needed to better understand the evolution of the complex mating behavior in this genus. Received 15 December 2006; revised 25 June 2007; accepted 11 September 2007.     

Taxonomic re-assessment of <Emphasis Type="Italic">Phaseolus dasycarpus</Emphasis> (Leguminosae): Systematic position,chromosome studies and re-description

Based on new information on floral structures, seedling, fruit, seed, root, and leaflet characters, Phaseolus dasycarpus is re-described and illustrated. Its chromosome number was determined as 2n  = 22, with metacentric and submetacentric chromosomes, and karyotype formula of 9m + 2sm. Previous phylogenetic analyses of ITS and trnK sequence data, and those obtained in the present study, show P. dasycarpus to be aligned within section Pedicellati.

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Resumen  Con nueva información de estructuras florales, plántulas, frutos, semillas, raíz y folíolos, se redescribe e ilustra a Phaseolus dasycarpus. Se determina el número cromosómico 2n  = 22, con cromosomas metacéntricos y submetacéntricos y fórmula cariotípica = 9m + 2sm. Análisis filogenéticos previos con secuencias de ITS y trnK y los resultados obtenidos en el presente estudio, establecen a P. dasycarpus en la sección Pedicellati.

     

Biological control of three floating water weeds,<Emphasis Type="Italic">Eichhornia crassipes,Pistia stratiotes</Emphasis>, and <Emphasis Type="Italic">Salviniamolesta</Emphasis> in the Republic of Congo

Since 1999, four specific weevils (Coleoptera, Curculionidae) were released in the Republic of Congo against three exotic floating water weeds: Neochetina eichhorniae Warner and N. bruchi Hustache against water hyacinth, Neohydronomus affinis Hustache against water lettuce, and Cyrtobagous salviniae Calder and Sands against water fern. Recoveries of exotic weevils were made from all 24 release sites except one, and all four species have established and spread (up to 800 km for water hyacinth weevils). Within a few years of releases, control of water fern and water lettuce was such that fishing and navigation could be resumed, while reductions of water hyacinth populations were only beginning.