Phylogeny and taxonomy of <Emphasis Type="Italic">Cladosporium</Emphasis>-like hyphomycetes,including <Emphasis Type="Italic">Davidiella</Emphasis> gen. nov., the teleomorph of <Emphasis Type="Italic">Cladosporium s. str.</Emphasis>

A phylogenetic study employing sequence data from the internal transcribed spacers (ITS1, ITS2) and 5.8S gene, as well as the 18S rRNA gene of various Cladosporium-like hyphomycetes revealed Cladosporium s. lat. to be heterogeneous. The genus Cladosporium s. str. was shown to represent a sister clade to Mycosphaerella s. str., for which the teleomorph genus Davidiella is proposed. The morphology, phylogeny and taxonomy of the cladosporioid fungi are discussed on the basis of this phylogeny, which consists of several clades representing Cladosporium-like genera. Cladosporium is confined to Davidiella (Mycosphaerellaceae) anamorphs with coronate conidiogenous loci and conidial hila. Pseudocladosporium is confined to anamorphs of Caproventuria (Venturiaceae). Cladosporium-like anamorphs of the Venturia (conidia catenate) are referred to Fusicladium. Human-pathogenic Cladosporium species belong in Cladophialophora (Capronia, Herpotrichiellaceae) and Cladosporium fulvum is representative of the Mycosphaerella/Passalora clade (Mycosphaerellaceae). Cladosporium malorum proved to provide the correct epithet for Pseudocladosporium kellermanianum (syn. Phaeoramularia kellermaniana, Cladophialophora kellermaniana) as well as Cladosporium porophorum. Based on differences in conidiogenesis and the structure of the conidiogenous loci, further supported by molecular data, C. malorum is allocated to Alternaria.     

New hyphomycetes from Restionaceae in fynbos: <Emphasis Type="Italic">Parasarcopodium ceratocaryi</Emphasis> gen. et sp. nov., and <Emphasis Type="Italic">Rhexodenticula elegiae</Emphasis> sp. nov.

Two new hyphomycetous anamorphs were isolated from plant hosts of the Restionaceae in the fynbos of the Cape Floral Kingdom of South Africa. Parasarcopodium ceratocaryi gen. et sp. nov. on Ceratocaryum decipiens produces aseptate, cylindrical conidia with amorphous mucoid appendages at both ends in rows or whorls of phialides on verruculose, mononematous conidiophores. Rhexodenticula elegiae sp. nov. on Elegia capensis produces pale brown, fusiform or broadly fusiform, 3-septate conidia on denticles located in the upper part of smooth, geniculate conidiophores. The morphological characteristics of both taxa are described, illustrated, and contrasted to other morphologically similar fungi. To elucidate the phylogenetic relationships of Parasarcopodium, partial large subunit rRNA (28S) gene sequence was generated from the ex-type strain, which revealed it to be a member of the Bionectriaceae (Hypocreales).     

<Emphasis Type="Italic">Umbelopsis gibberispora</Emphasis> sp. nov. from Japanese leaf litter and a clarification of <Emphasis Type="Italic">Micromucor ramannianus </Emphasis>var. <Emphasis Type="Italic">angulisporus</Emphasis>

 Umbelopsis gibberispora is described as a new species in the genus Umbelopsis, Umbelopsidaceae, Mucorales. The species differs from others in this genus by ellipsoidal sporangiospores with unilaterally thickened walls. Phylogenetic analyses based on nuclear large subunit ribosomal DNA (nLSU rDNA) partial sequences suggest that U. gibberispora, U. swartii, and U. westeae form a clade together with the strains of Umbelopsis ramanniana. The ex-type strain of Micromucor ramannianus var. angulisporus is found to be very close to Umbelopsis vinacea, whereas other isolates identified under the former name in the sense of Linnemann fall in the U. ramanniana subclade. For these isolates, a new species, Umbelopsis angularis, is introduced. Phylogenetic relationships among Umbelopsis species are discussed related to their attributes of the sporangial wall and mature spore shapes. Received: August 27, 2002 / Accepted: March 11, 2003 Acknowledgments We thank Dr. Takashi Ohsono, Graduate School of Agriculture, Kyoto University, Japan, for providing the strain of U. gibberispora (CBS 109328). We also thank Dr. Wieland Meyer, University of Sydney, Australia for access to the phylogenetic tree based on ITS sequence data before publishing, and Dr. Richard C. Summerbell, Centraalbureau von Schimmelcultures, the Netherlands, for linguistic corrections.     

Myrothecium-like (Ascomycota,Hypocreales) species from tropical areas: <Emphasis Type="Italic">Digitiseta</Emphasis> gen. nov. and additions to <Emphasis Type="Italic">Inaequalispora</Emphasis> and <Emphasis Type="Italic">Parvothecium</Emphasis>

Inaequalispora and Parvothecium are two myrothecium-like, closely related genera of Hypocreales. They are also morphologically similar, sharing sporodochial conidiomata, penicillate conidiophores, fusiform to ellipsoidal conidia accumulating in a green slimy drop, and hypha-like setoid extensions emerging through the conidial mass. During a revision of myrothecium-like isolates originating from rainforest areas of South America (Ecuador, Brazil) and Southeast Asia (Singapore), multilocus phylogenetic inferences (based on DNA sequence data of ITS, partial nuc 28S, and partial tef1a, rpb2 and tub2) and morphological studies concordantly revealed the occurrence of two undescribed species of Inaequalispora (I. longiseta sp. nov. and I. cylindrospora sp. nov.) and one undescribed species of Parvothecium (P. amazonensesp. nov.). Myrothecium setiramosum, M. dimorphum, and two undescribed taxa form the base of a new lineage, sister to the current Parvothecium lineage. This lineage is recognized as Digitiseta gen. nov., typified by D. setiramosa comb. nov. Digitiseta dimorpha comb. nov. is also proposed, and the new species D. parvodigitata sp. nov. and D. multidigitata sp. nov. are described.     

<Emphasis Type="Italic">Tubulideres seminoli</Emphasis> gen. et sp. nov. and <Emphasis Type="Italic">Zelinkaderes brightae</Emphasis> sp. nov. (Kinorhyncha,Cyclorhagida) from Florida

One new kinorhynch genus and species and one new species from the genus Zelinkaderes are described from sandy sediment off Fort Pierce, Florida. The new genus and species, Tubulideres seminoli gen. et sp. nov. is characterized by the presence of the first trunk segment consisting of a closed ring, the second segment of a bent tergal plate with a midventral articulation and the following nine segments consisting of a tergal and two sternal plates. Cuspidate spines are not present, but flexible tubules are located on several segments, and in particular concentrated on the ventral side of the second segment. Middorsal spines are present on all trunk segments and are alternatingly offset to a position slightly lateral to the middorsal line. Zelinkaderes brightae nov. sp. is characterized by its spine formula in having middorsal spines on trunk segments 4, 6 and 8–11, lateroventral acicular spines on segment 2, lateral accessory cuspidate spines on segments 2 and 8, ventrolateral cuspidate spines on segments 4–6 and 9, lateroventral acicular spines present on segments 8 and 9, and midterminal, lateral terminal and lateral terminal accessory spines on segment 11. The spine formula of Z. brightae nov. sp. places it in a position in between Z. submersus and a clade consisting of Z. klepali and Z. floridensis. The new findings on Z. brightae nov. sp. have led us to propose an emended diagnosis for the genus.     

<Emphasis Type="Italic">Salinarchaeum laminariae</Emphasis> gen. nov., sp. nov.: a new member of the family <Emphasis Type="Italic">Halobacteriaceae</Emphasis> isolated from salted brown alga <Emphasis Type="Italic">Laminaria</Emphasis>

Halophilic archaeal strains R26^T and R22 were isolated from the brown alga Laminaria produced at Dalian, Liaoning Province, China. Cells from the two strains were pleomorphic rods and Gram negative, and colonies were red pigmented. Strains R26^T and R22 were able to grow at 20–50°C (optimum 37°C) in 1.4–5.1 M NaCl (optimum 3.1–4.3 M) at pH 5.5–9.5 (optimum pH 8.0–8.5) and neither strain required Mg²⁺ for growth. Cells lyse in distilled water and the minimum NaCl concentration required to prevent cell lysis was 8% (w/v) for strain R26^T and 12% (w/v) for strain R22. The major polar lipids of the two strains were phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester and minor phosphatidylglycerol sulfate; glycolipids were not detected. Phylogenetic analyses based on 16S rRNA genes and rpoB′ genes revealed that strains R26^T and R22 formed a distinct clade with the closest relative, Natronoarchaeum mannanilyticum. The DNA G+C content of strains R26^T and R22 was 65.8 and 66.4 mol%, respectively. The DNA–DNA hybridization value between strains R26^T and R22 was 89%. The phenotypic, chemotaxonomic and phylogenetic properties suggest that the strains R26^T and R22 represent a novel species in a new genus within the family Halobacteriaceae, for which the name Salinarchaeum laminariae gen. nov., sp. nov. is proposed. The type strain is R26^T (type strain R26^T = CGMCC 1.10590^T = JCM 17267^T, reference strain R22 = CGMCC 1.10589).     

<Emphasis Type="Italic">Kretzschmaria varians</Emphasis> sp. nov., <Emphasis Type="Italic">Xylaria coremiifera</Emphasis> sp. nov. and <Emphasis Type="Italic">Xylaria umbonata</Emphasis> sp. nov. from Costa Rica

Kretzschmaria varians, a species apparently related to K. micropus, is described as new. It is distinguished primarily by having asci with 2 to 8 ascospores with inconstant germination slit length and remains of synnemata on stromata and surrounding substrate. Xylaria coremiifera, described here as new, bears small fragile coremia on pulvinate stromata and the surrounding substrate. Asci often have fewer than 8 ascospores, most frequently 4. Xylaria umbonata, described here as new, produces perithecia around a central umbo that appears to be the remains of a synnema. Ascospores have long spiralling germination slits.     

Two new lineages of aquatic ascomycetes: <Emphasis Type="Italic">Atractospora</Emphasis> gen. nov. and <Emphasis Type="Italic">Rubellisphaeria</Emphasis> gen. et sp. nov., and a sexual morph of <Emphasis Type="Italic">Myrmecridium montsegurinum</Emphasis> sp. nov.

Two new genera, Atractospora and Rubellisphaeria, are described for perithecial ascomycetes occurring on decaying wood submerged in freshwater habitats. Their relationships with other morphologically similar fungi were investigated utilising four nuclear ribosomal and protein-coding loci. They are nested together with members of five orders and families and numerous genera incertae sedis in the Sordariomycetidae in a clade supported by Maximum Likelihood and Bayesian inference methods. Their closest relative is Lentomitella. Atractospora includes species characterised by dark, immersed to semi-immersed beaked ascomata lying horizontally to the host, stipitate asci with a pronounced non-amyloid apical annulus and hyaline, fusiform, septate, thick-walled ascospores with smooth or ornamented wall. Three novel species are introduced (A. decumbens, A. reticulata and A. verruculosa). A new combination for Aquaticola ellipsoidea is proposed in Atractospora based on molecular data and morphological characters. Rubellisphaeria, with a new species R. abscondita, is distinct by subhyaline to reddish brown, immersed ascomata with a lateral neck, short-stipitate asci and ellipsoidal smooth ascospores with a delayed formation of a middle septum. The sexual morph of the dematiaceous hyphomycete genus Myrmecridium was encountered for the first time on decaying wood submerged in a stream. It is nested in a strongly supported monophyletic clade of the Myrmecridiales. The novel species M. montsegurinum is described; it possesses papillate ascomata immersed beneath a clypeus with subhyaline to weakly pigmented ascomatal wall, long-stipitate asci with a non-amyloid apical annulus and three-septate, hyaline, ellipsoidal, delicately verruculose ascospores. A morphology-based key is provided to facilitate identification of species of Atractospora.     

<Emphasis Type="Italic">Algoriella xinjiangensis</Emphasis> gen. nov., sp. nov., a new psychrotolerant bacterium of the family <Emphasis Type="Italic">Flavobacteriaceae</Emphasis>

An aerobic, Gram-stain negative, non-spore-forming and psychrotolerant bacterium, designated strain XJ109^T, was isolated from a sewage water sample collected from Xinjiang Uigur Autonomous Region, China. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain XJ109^T represents a novel member of the family Flavobacteriaceae. The strain showed 95.5 % similarity with the 16S rRNA gene sequence of Empedobacter brevis LMG 4011^T, 95.4 % with Chishuiella changwenlii BY4^T, 95.3 % with Empedobacter falsenii NF 993^T and 92.3 % with Weeksella virosa DSM 16922^T. Strain XJ109^T showed the common phenotypic and chemotaxonomic characteristics of the family Flavobacteriaceae, containing menaquinone-6 (MK-6) as the predominant respiratory quinone and iso-C_17:0 3OH and iso-C_15:0 as the major fatty acids. The polar lipid profile consisted of phosphatidylethanolamine, one unidentified phospholipid and two unidentified lipids. The genomic DNA G+C content was 38.0 mol%. Strain XJ109^T was positive for catalase and oxidase activities, and it was observed to grow at 4–30 °C (optimal 16–20 °C), pH 6.5–10.0 (optimal 7.0–7.5) and in media containing 0–2.0 % (w/v) NaCl (optimal 0.5 %). On the basis of the polyphasic evidence presented, strain XJ109^T is considered to represent a novel genus and species of the family Flavobacteriaceae, for which the name Algoriella xinjiangensis gen. nov., sp. nov. is proposed. The type strain is XJ109^T (=CGMCC 1.10229^T=JCM 16590^T).     

<Emphasis Type="Italic">Sativumoides</Emphasis> and <Emphasis Type="Italic">Cladosporiopsis</Emphasis>, two new genera of hyphomycetes from China

Sativumoides punicae gen. et sp. nov. and Cladosporiopsis ovata gen. et sp. nov. are described and illustrated. Sativumoides is characterized by macronematous, individual, percurrently extending conidiophores, integrated, monoblastic, apical, lageniform conidiogenous cells, and single, apical, pale brown to brown, garlic-bulb-shaped dictyosporous conidia with predominantly longitudinal septa. Cladosporiopsis is unique in possessing pigmented, apiosporous conidia seceding schizolytically from integrated, monoblastic, determinate conidiogenous cells; the conidia, arising from the sides or ends of ramoconidia, form short, acropetal chains. Sativumoides is compared with similar anamorphic genera including Triposporium, Iyengarina, Acrodictys, Actinocladium, Piricaudiopsis, Cheiroidea, Stephanoma, Domingoella, Acrogenospora and Shrungabeeja. The distinctions between Cladosporiopsis and similar genera including Cladosporium, Ochrocladosporium, Rachicladosporium, Rhizacladosporium, Toxicocladosporium, Ramularia, Bispora, Lylea and Devriesia are also discussed. Keys to these two novel genera and their morphologically similar genera are provided.     

<Emphasis Type="Italic">Oceaniovalibus guishaninsula</Emphasis> gen. nov., sp. nov., A Marine Bacterium of the Family <Emphasis Type="Italic">Rhodobacteraceae</Emphasis>

The alphaproteobacterial strain JLT2003^T was isolated from surface seawater off the coast of Guishan island, Taiwan. The strain was Gram negative, ovoid or coccoid, non-motile and formed pink colonies on marine agar 2216 (MA; DIFCO) medium. The dominant fatty acids were C_18:1ω7c, cyclo C_19:0ω8c, and C_16:0. The polar lipid profile consisted of diphosphatidylglycerol and phosphatidylglycerol. The major respiratory ubiquinone was Q-10. The DNA G+C content was 62.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain was most closely related to Pontibaca methylaminivorans GRP21^T with 94.8% similarity. The isolate was distinguishable from members of the family Rhodobacteraceae based on phenotypic and biochemical characteristics. On the basis of the taxonomic data presented, strain JLT2003^T is considered to represent a novel species of a new genus, for which the name Oceaniovalibus guishaninsula gen. nov., sp. nov. is proposed. The type strain of Oceaniovalibus guishaninsula is JLT2003^T (=JCM 17765^T = CGMCC 1.10827^T).     

<Emphasis Type="Italic">Leifiporia rhizomorpha</Emphasis> gen. et sp. nov. and <Emphasis Type="Italic">L. eucalypti</Emphasis> comb. nov. in Polyporaceae (Basidiomycota)

A new poroid wood-inhabiting fungal genus, Leifiporia, is proposed, based on morphological and molecular evidence, which is typified by L. rhizomorpha sp. nov. The genus is characterized by an annual growth habit, resupinate basidiocarps with white to cream pore surface, a dimitic hyphal system with generative hyphae bearing clamp connections and branching mostly at right angles, skeletal hyphae present in the subiculum only and distinctly thinner than generative hyphae, IKI–, CB–, and ellipsoid, hyaline, thin-walled, smooth, IKI–, CB– basidiospores. Sequences of ITS and LSU nrRNA gene regions of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and Bayesian inference methods. The phylogenetic analysis based on molecular data of ITS + nLSU sequences showed that Leifiporia belonged to the core polyporoid clade and was closely related to Diplomitoporus overholtsii and Lopharia cinerascens, and then grouped with Pycnoporus and Trametes. Further investigation was obtained for more representative taxa in the Polyporaceae based on nLSU sequences, in which the results demonstrated that the genus Leifiporia formed a monophyletic lineage with a strong support (100 % BS, 100 % BP, 1.00 BPP). Both morphological and molecular evidence confirmed the placement of the new genus in the core polyporoid clade. In addition, a new combination, Leifiporia eucalypti, is proposed based on examination of its type material and phylogeny.     

Multi-gene phylogenetic analyses reveals <Emphasis Type="Italic">Neohelicosporium</Emphasis> gen. nov. and five new species of helicosporous hyphomycetes from aquatic habitats

Helicosporous hyphomycetes are a morphologically allied group of Tubeufiales. We introduce a new helicosporous genus, Neohelicosporium, with five new species, Neohelicosporium aquaticum, N. guangxiense, N. hyalosporum, N. parvisporum, and N. thailandicum, based on morphological and phylogenetic evidence. The RPB2 protein gene data are provided to analyze their phylogeny in Tubeufiales. Phylogenetic analyses of combined ITS, LSU, RPB2, and TEF1α sequence data from 13 new isolates of Neohelicosporium provided evidence to support the establishment of the new taxa. The morphological characters of Neohelicosporium that differentiate it from other helicosporous species are compared and discussed.     

<Emphasis Type="Italic">Subsessila turbinata</Emphasis> gen. et. sp. nov. (Beltraniaceae), a <Emphasis Type="Italic">Beltrania</Emphasis>-like fungus from Thailand

A new monotypic Beltrania-like genus, Subsessila, with its type species S. turbinata, is described, illustrated and compared with similar genera. The new genus is introduced in the family Beltraniaceae based on phylogenetic analysis and morphological characters. Subsessila can be easily distinguished from other Beltrania-like genera by dark setae arising from radially lobed basal cells, mostly lacking macronematous conidiophores. Conidiogenous cells are ampulliform or doliiform and produce turbinate to clavate conidia with rostrate proximal end and rounded distal end. Evidence for establishment of the new genus is provided based on morphological comparison and DNA sequence data analyses.     

Revision of the genus <Emphasis Type="Italic">Entactinosphaera</Emphasis> Foreman, 1963 and the new genus <Emphasis Type="Italic">Retientactinosphaera</Emphasis> gen. nov. (Paleozoic radiolaria)

The genus Entactinosphaera Foreman, 1963 is revised; it is shown to combine seven different genera, which are distinguished by morphological characters and belong to three orders of two radiolarian classes: the class Sphaerellaria, order Entactiniata (Bientactinosphaera, Entactinosphaera, Helioentactinia, Radiobisphaera), and class Spumellaria, orders Cancelliata (Retientactinosphaera, Magnisphaera) and Spongiata (Spongentactinia). New radiolarian taxa from the Middle Frasnian-Lower Famennian of the Timan-Pechora Basin and from the Lower Famennian of the Polar Ural Mountains, Russia, are described: Retientactinosphaera gen. nov., R. magnifica sp. nov., and R. clavata sp. nov.     

<Emphasis Type="Italic">Rubricella aquisinus</Emphasis> gen. nov., sp. nov., a novel member of the family <Emphasis Type="Italic">Rhodobacteraceae</Emphasis>

A Gram-stain negative, ovoid or short rod-shaped, aerobic and non-motile bacterial strain, designated J82^T, was isolated from a seawater sample collected from the coast of Yellow Sea in Qingdao, China. The strain grew at salinities of 1.0–6.0% (w/v) NaCl (optimum, 2.5%). Growth occurred at pH 6.0-8.0 (optimum, pH 7.0) and 10–42 °C (optimum, 28–30 °C). The genomic DNA G + C content was determined to be 57.5 mol%. Q-10 was detected as the respiratory quinone. The major fatty acid (>10%) was Summed feature 8 (C_18:1 ω7c and/or C_18:1 ω6c). The polar lipids consisted of phosphatidylethanolamine, two unidentified aminolipids and two unidentified polar lipids. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain J82^T forms a distinct evolutionary lineage within the family Rhodobacteraceae. On the basis of phenotypic, chemotaxonomic and phylogenetic characteristics, the strain merits recognition as representative of a novel genus and species within the family Rhodobacteraceae for which the name Rubricella aquisinus gen. nov., sp. nov. is proposed. The type strain of Rubricella aquisinus is J82^T (= DSM 103377^T = CCTCC AB 2016170^T).     

<Emphasis Type="Italic">Quinua</Emphasis> and Relatives (<Emphasis Type="Italic">Chenopodium</Emphasis> sect.<Emphasis Type="Italic">Chenopodium</Emphasis> subsect.<Emphasis Type="Italic">Celluloid</Emphasis>)

Traditionally viewed as an Andean grain crop,Chenopodium quinoa Willd. includes domesticated populations that are not Andean, and Andean populations that are not domesticated. Comparative analysis of leaf morphology and allozyme frequencies have demonstrated that Andean populations, both domesticated(quinua) and free-living(ajara), represent an exceptionally homogeneous unit that is well differentiated from allied domesticates of coastal Chile(quingua) and freeliving populations of the Argentine lowlands(C. hircinum). This pattern of relationships indicates that Andean populations represent a monophyletic crop/weed system that has possibly developed through cyclic differentiation (natural vs. human selection) and introgressive hybridization. Relative levels of variation suggest that this complex originated in the southern Andes, possibly from wild types allied withC. hircinum, with subsequent dispersal north to Colombia and south to the Chilean coast. Coastal populations were apparently isolated from post-dispersal differentiation and homogenization that occurred in the Andes. Other data point toward a center of origin in the northern Andes with secondary centers of genetic diversity subsequently developing in the southern Andes and the plains of Argentina. Comparative linkage of South American taxa, all tetraploid, with North American tetraploids of the subsection will eventually clarify this problem. While the possibility of a direct phyletic connection betweenC. quinoa and the Mexican domesticate(C. berlandieri subsp. nuttalliae,) cannot be excluded, available evidence indicates that the latter represents an autonomous lineage that is associated with the basal tetraploid, C. b. subsp.berlandieri, through var.sinuatum, whereas South American taxa show possible affinities to either var. zschackei or var.berlandieri. An extinct domesticate of eastern North America,C. b. subsp.jonesianum, represents either another instance of independent domestication, possibly from subsp. b. var.zschackei, or a northeastern outlier of subsp.nuttalliae.