Diffusion of nuclear and mitochondrial genes across a zone of secondary contact in the maritime shrew, Sorex maritimensis: implications for the conservation of a Canadian endemic mammal

The maritime shrew, Sorex maritimensis, is a Canadian endemic species with a limited distribution in two provinces in eastern Canada. Phylogeographic analysis of mitochondrial DNA control region and cytochrome b sequences revealed two clades, one found in New Brunswick and the other primarily in Nova Scotia, Canada. We propose that these clades have come back into secondary contact following the Wisconsin glaciation via wetlands on the narrow Isthmus of Chigneto that connects these provinces. Despite evidence of an historic separation of maritime shrew subpopulations in Nova Scotia and New Brunswick, we conclude that shrews in these two regions should be considered a single evolutionary significant unit but separate, semi-isolated management units that should be recognized as such for conservation purposes. The susceptibility of this stenotopic species with limited dispersal capabilities raises concerns about its long-term persistence if climate-change induced habitat fragmentation increases. Maintenance of contiguous wetland habitats is needed to ensure connectivity and gene flow among populations of the maritime shrew.     

Conservation genetics of Blanding’s turtle and its application in the identification of evolutionarily significant units

Blanding’s turtle is a North American freshwater turtle whose main range occurs south of the Great Lakes; disjunct populations occur east of the Appalachian Mountains from New York to Nova Scotia. The species is listed as threatened or endangered in most of its range. We employed five variable microsatellites to examine samples of 300 individuals in 12 populations. Estimates of F _ST based on pairwise comparisons of populations ranged from 0.000 to 0.465. Phylogenetic analysis of these F _ST values reveals that the Appalachian Mountains and the Hudson River appear to present major barriers to gene flow in Blanding’s turtle. The extent of fine-scale genetic structure previously reported in the Nova Scotian populations was not found in other parts of the species’ range. We recommend that populations separated by the Appalachian Mountains as well as the highly disjunct Nova Scotian populations of Blanding’s turtle be recognized as evolutionarily significant units.     

Inheritance of mucilage canals in Laminaria (section Simplices) in eastern Canada

Two experiments have been carried out to test the suitability of the occurrence of mucilage canals as a criterion for species or ecotype definition in the non-digitate section of the genus Laminaria. A matrix of crossability tests shows complete interfertility between all mucilage canal types, fertile F₁ hybrids being produced in all cases. Quantitative genetic analysis reveals a large environmental component in the phenotypic variance of degree of mucilage canal development. Only plants from Nova Scotia bred true with respect to mucilage canals. This characteristic is therefore considered generally unsuitable for taxonomic and biological species determination, though there may be evidence for intraspecific genotypic differentiation of Nova Scotian populations.     

Trends in abundance of rocky intertidal seaweeds and filter feeders across gradients of elevation,wave exposure,and ice scour in eastern Canada

On NW Atlantic rocky shores, the main basal organisms in intertidal communities are seaweeds (Ascophyllum nodosum, Fucus spp. and Chondrus crispus) and filter feeders (barnacles, Semibalanus balanoides, and mussels, Mytilus spp.). Their ecology has been extensively studied in New England (United States), but knowledge gaps exist for northern shores, which are subjected to stronger environmental stress. Therefore, we studied the above organisms on Canadian shores. We quantified the summer abundance of these seaweeds and filter feeders across full vertical (intertidal elevation) and horizontal (wave exposure and winter ice scour) environmental gradients on the Gulf of St. Lawrence and open Atlantic coasts of Nova Scotia. At the regional scale along the open Atlantic coast, seaweeds showed similar abundances in Nova Scotia than values reported for New England. However, both filter feeders were considerably less abundant in Nova Scotia. At the local scale in Nova Scotia, intense winter ice scour (which only occurs on the Gulf of St. Lawrence coast) was associated with a very low abundance of all species except barnacles. Spatial trends in Nova Scotia were similar to patterns known for certain species elsewhere, such as A. nodosum being almost restricted to sheltered habitats, regardless of elevation, and C. crispus being almost restricted to low elevations, regardless of exposure. Other trends were, however, characteristic of Nova Scotia, such as C. crispus being frequent at low elevations in exposed habitats, unlike in New England, where mussels often predominate there because of competitive advantages. In Nova Scotia, mussels were always restricted to cracks and crevices, unlike in New England, where they form extensive intertidal beds on exposed shores. The direct effects of increased environmental stress and indirect effects through altered interspecific interactions might explain the regional differences in local species distribution, which will require experimental validation. Handling editor: K. Martens     

Distributions of Ephemeroptera, Plecoptera, and Trichoptera of three maritime catchments differing in pH

1. Two broad-scale environmental influences affecting species of Ephemeroptera, Trichoptera and Plecoptera inhabiting riffle habitat of three study catchments in New Brunswick and Nova Scotia were stream size-temperature-related variables and acidity-related variables. 2. Species richness was most affected by acidity in tributaries of intermediate size <0.001<0.1m³s^?1). 3. Of the three insect orders investigated, mayfly species richness was affected most by acidity, and stonefly species richness affected least by this factor. 4. Zoogeographical isolation of the Nova Scotian catchments resulted in absence of some species of low general abundance, but these species had little influence on the site classification by TWINSPAN analysis. 5. Predaceous stoneflies were collected in greater numbers from circumneutral sites and predaceous caddisflies in greater numbers from the Nova Scotian sites. 6. Although the Nova Scotian catchments have probably been historically acidic, due to high concentrations of organic acids, pH currently limits the distributions of many indigenous invertebrate species. These species may be vulnerable to the more recent, additional, anthropogenic acidification of these catchments.     

PLASTID DNA RESTRICTION ANALYSIS LINKS THE HETEROMORPHIC PHASES OF AN APOMICTIC RED ALGAL LIFE HISTORY1

Gymnogongrus sp. (Phyllophoraceae) from Nova Scotia, Canada, identified tentatively as G. devoniensis (Greville) Schotter, grows in association with an Erythrodermis-like that forms chains of tetrasporangia or bisporangia. The crust resembles tetrasporophytic phases of other Gymnogongrus species, but in culture both it and the G. devoniensis gametophytes cycle independently by apomictic reproduction. A method was developed for extracting organelle DNA from this carrageenophyte genus involving purification of nucleic acids by binding to hydroxylapatite. Plastid DNA from G. devoniensis and bisporangial Erythrodermis-like crusts was compared with that of G. devoniensis and G. crenulatus (Turner) J. Agardh from France and of G. furcellatus (C. Agardh) J. Agardh from Chile. Plastid genomes of all Gymnogongrus species and the Erythrodermis-like crust were approximately 175 kb long. A single 3.5-kb plasmid DNA species was found in G. devoniensis and the Erythrodermis-like bisporophyte but not in other samples. Digestion of plasted DNA with several restriction endonucleases produced identical patterns in G. devoniensis and the Erythrodermis-like bisporophyte from the same location, indicating clearly that these entities represent two phases of an uncoupled life history. These results were confirmed with heteologous probes. A restriction fragment length polymorphism was identified between two Nova Scotian G. devoniensis populations. There was no similarity in restriction patterns between G. devoniensis from Nova Scotia, G. devoniensis from France. G. crenulatus or G. furcellatus, suggesting that molecular taxonomic methods could be important in delineating members of this morphologically variable genus. Further study is necessary to determine whether either Nova Scotian G. devoniensis or French G. devoniensis corresponds to type populations of G. devoniensis from Devon, England.     

Phylogeography,population genetics and distribution modelling reveal vulnerability of Scirpus longii (Cyperaceae) and the Atlantic Coastal Plain Flora to climate change

A proactive approach to conservation must be predictive, anticipating how habitats will change and which species are likely to decline or prosper. We use composite species distribution modelling to identify suitable habitats for 18 members of the North American Atlantic Coastal Plain Flora (ACPF) since the Last Glacial Maximum and project these into the future. We then use Scirpus longii (Cyperaceae), a globally imperiled ACPF sedge with many of the characteristics of extinction vulnerability, as a case study. We integrate phylogeographical and population genetic analyses and species distribution modelling to develop a broad view of its current condition and prognosis for conservation. We use genotyping‐by‐sequencing to characterize the genomes of 142 S. longii individuals from 20 populations distributed throughout its range (New Jersey to Nova Scotia). We measure the distribution of genetic diversity in the species and reconstruct its phylogeographical history using the snapp and rase models. Extant populations of S. longii originated from a single refugium south of the Laurentide ice sheet around 25 ka. The genetic diversity of S. longii is exceedingly low, populations exhibit little genetic structure and the species is slightly inbred. Projected climate scenarios indicate that nearly half of extant populations of S. longii will be exposed to unsuitable climate by 2070. Similar changes in suitable habitat will occur for many other northern ACPF species—centres of diversity will shift northward and Nova Scotia may become the last refuges for those species not extinguished.     

Parasitism and predation as agents of mortality of winter moth populations in neglected apple orchards in Nova Scotia

Abstract.

• 1 This study compared the roles of pupal mortality and parasitism in winter moth (Operophtera brumata) population dynamics in Nova Scotian apple orchards and assessed the importance of beetles as pupal predators.
• 2 The component of pupal mortality termed predation accounted for greater stage-specific mortality of winter moth than parasitism by Cyzenis albicans in four neglected orchards.
• 3 Parasitism by Cyzenis albicans was not spatially density-dependent in any orchard, whereas the predation component of pupal mortality was spatially density-dependent in the two orchards most densely populated by winter moth.
• 4 Field experiments indicated that over 60% of pupal predation may be attributed to beetles, and that about 46% of pupal predation occurred within 4 weeks after pupal drop.
• 5 Mortality of introduced populations of winter moth in Nova Scotia resembles that of native populations in England where density-dependent predation regulates the winter moth population and reduces the parasitoid population to minimal levels. The situation in Nova Scotia appears to have changed appreciably since the establishment of parasitoids into the system in the 1950s.

     

Microsatellite analysis of the phylogeography, Pleistocene history and secondary contact hypotheses for the killifish, Fundulus heteroclitus

The mummichog, Fundulus heteroclitus, exhibits extensive latitudinal clinal variation in a number of physiological and biochemical traits, coupled with phylogeographical patterns at mitochondrial and nuclear DNA loci that suggest a complicated history of spatially variable selection and secondary intergradation. This species continues to serve as a model for understanding local and regional adaptation to variable environments. Resolving the influences of historical processes on the distribution of genetic variation within and among extant populations of F. heteroclitus is crucial to a better understanding of how populations evolve in the context of contemporary environments. In this study, we analysed geographical patterns of genetic variation at eight microsatellite loci among 15 populations of F. heteroclitus distributed throughout the North American range of the species from Nova Scotia to Georgia. Genetic variation in Northern populations was lower than in Southern populations and was strongly correlated with latitude throughout the species range. The most common Northern alleles at all eight loci exhibited concordant latitudinal clinal patterns, and the existence of an abrupt transition zone in allele frequencies between Northern and Southern populations was similar to that observed for mitochondrial DNA and allozyme loci. A significant pattern of isolation by distance was observed both within and between northern and southern regions. This pattern was unexpected, particularly for northern populations, given the recent colonization history of post-Pleistocene habitats, and was inconsistent with either a recent northward population expansion or a geographically restricted northern Pleistocene refugium. The data provided no evidence for recent population bottlenecks, and estimates of historical effective population sizes suggest that post-Pleistocene populations have been large throughout the species distribution. These results suggest that F. heteroclitus was broadly distributed throughout most of its current range during the last glacial event and that the abrupt transition in allele frequencies that separate Northern and Southern populations may reflect regional disequilibrium conditions associated with the post-Pleistocene colonization history of habitats in that region.     

A preliminary examination of genetic variation in a peripheral population of Blanding's turtle, Emydoidea blandingii

Random amplified polymorphic DNA (RAPD) was used to compare the Nova Scotia population of Blanding's turtle (Emydoidea blandingii) with several populations from the species' main range. The Nova Scotia population is believed to have been isolated from the main range for 4000-8000 years. Cluster analysis using a neighbour-joining algorithm produced a dendrogram showing the Nova Scotia population clustering separately from those populations in the main range. Analysis of molecular variance shows 34.28% of total variance to be accounted for between the Nova Scotia population and populations in the main range. While this study is preliminary, the results suggest that the Nova Scotia population of Blanding's turtle may be important to the maintenance of genetic diversity in the species.     

The demography of trout lily (Erythronium americanum Ker.) in Nova Scotia

The age structures of both native and transplanted populations of the perennial herb, trout lily (Erythronium americanum), were analysed and found to have age-independent mortality rates. Cohort survival was greatest in populations growing on hardwood forested flood plains (60%), less in populations from gently sloping terraces with pit-and-mound microrelief (53%) and smallest (45%) for colonies on slopes steeper than 15°. The former habitat-type is the optimum for trout lily in Nova Scotia and in it the proportion of flowering bulbs can reach 35%. The second named habitat is widespread and characterised by fewer flowering bulbs (5–10%). In the latter habitat flowering bulbs are uniformly rare. Trout lily bulbs tend to be sterile until at least their eighth year. The high mortality rates of populations on steeply sloping, hardwood forested ground ensure minimal survival of bulbs beyond their sixth year. In the other two named habitats sufficient numbers of bulbs reach ages of 8 or 9 years for some to make the translation from the sterile to the flowering form. In all the habitats studied in Nova Scotia, propagation is typically by either runners or, less importantly, daughter bulbs, with the peak of activity in the bulbs third and fourth years. The plants of flood plains showed the greatest rates of vegetative propagation, by cohort, but many of the bulbs from colonies growing on steep slopes lacked runners or daughter bulbs. As all bulbs for the transplant experiments came from a single clone it can be concluded that trout lily plants in Nova Scotia have a sufficiently large genetic endowment for them to behave in the same manner as native populations of the species in the several habitats represented in the province.The figures were drafted in the cartography section of the University of Canterbury. The National Research Council of Canada supported the research with a series of grants.     

Allozymic diversity of Allium tricoccum (Ait.) Solander var. burdickii Hanes in isolated populations of Nova Scotia (Canada)

 Allium tricoccumvar. burdickii is a rare species in Nova Scotia, growing in isolated populations. Genetic variation was investigated in three populations using cellulose acetate gel electrophoresis. The results showed that all 13 enzyme loci were polymorphic. An excess of heterozygotes was found in all populations. A total of 29 genotypes were detected in the populations. Very few genotypes were common to two populations and none to the three populations. Genetic diversity among populations was compared with geographic distance and previous work. The comparison of the genetic distance matrix to the geographic distance matrix indicated no relationship. F-statistics suggested that the populations are predominantly maintained through vegetative propagation. Occasional sexual reproduction and gene flow might occur in order to maintain high level of variation among populations. Environmental conditions could also influence population genetic structure as they occur in highly different habitats. Received November 13, 2000 Accepted February 26, 2001     

Population structure of Atlantic salmon from the Conne River, Newfoundland as determined from microsatellite DNA

Variation at four microsatellite loci was examined for three populations of Atlantic salmon Salmo salar from the Conne River, Newfoundland. Samples of wild parr were collected from the mainstem Conne River during 4 years, and from tributaries Twillick Brook and Bernard Brook during 2 years. No significant temporal variation was observed in allele frequencies at the Ssal4, Ssal97, Ssa202, and Ssa289 loci. No difference in allele frequencies was observed between parr from Bernard and Twillick brooks at any locus, but allele frequencies of mainstem Conne River parr were significantly different from those of the tributaries at Ssal4 and Ssa202, indicative of differentiation among local populations. Atlantic salmon from the Conne River system were well differentiated from those in Nova Scotia, Canada and from those in Europe.     

TETRASAT: a program for the population analysis of allotetraploid microsatellite data

Microsatellite markers are quite popular due to their degree of polymorphism and efficiency; however, the utility of such markers for analysing allotetraploid species is often hampered by an inability to determine allele copy number for partial heterozygotes. tetrasat is a program that uses an iterative substitution process to account for all probable combinations of allele copy numbers in populations with partial heterozygote samples. The program subsequently calculates allele frequencies, and mean Hardy–Weinberg expected heterozygosity (H_E), Shannon–Weiner Diversity Index (H′) and Nei's measure of population differentiation (G_ST) are reported for each locus and population. Of equal importance is the calculation of statistical variability generated by the missing data and allele substitution process, which allows for assessment of the strength of conclusions drawn from the statistics.     

Genetic variation in westslope cutthroat trout <Emphasis Type="Italic">Oncorhynchus clarkii lewisi</Emphasis>: implications for conservation

Twenty-five populations of westslope cutthroat trout from throughout their native range were genotyped at 20 microsatellite loci to describe the genetic structure of westslope cutthroat trout. The most genetic diversity (heterozygosity, allelic richness, and private alleles) existed in populations from the Snake River drainage, while populations from the Missouri River drainage had the least. Neighbor-joining trees grouped populations according to major river drainages. A great amount of genetic differentiation was present among and within all drainages. Based on Nei’s D _S , populations in the Snake River were the most differentiated, while populations in the Missouri River were the least. This pattern of differentiation is consistent with a history of sequential founding events through which westslope cutthroat trout may have experienced a genetic bottleneck as they colonized each river basin from the Snake to the Clark Fork to the Missouri river. These data should serve as a starting point for a discussion on management units and possible distinct population segments. Given the current threats to the persistence of westslope cutthroat trout, and the substantial genetic differentiation between populations, these topics warrant attention.     

Dynamic spleen mass in wild and domestic American mink

The immune system is considered to be an energetically expensive component of an individual's life history. Investment in the immune system can depend on the environment that an individual finds itself in. The American mink, Neovison vison, exists in the natural environment and on fur farms. The natural environment and mink farm differ in many ways, such as wild mink being exposed to many parasites that are less prevalent and less abundant in the domestic environment because of veterinary care. We collected free‐ranging mink from commercial trappers and domestic mink from fur farmers in Ontario and Nova Scotia, Canada, and examined relative spleen mass. Wild male mink had larger spleens than domestic mink in Nova Scotia, with a similar trend in Ontario. Female mink that escaped from farms (feral) in Nova Scotia had significantly larger spleens than their domestic counterparts on the farms. Both of these results are consistent with the prediction that the natural environment contains parasites and pathogens that require enhanced investment in the immune system. In Nova Scotia, females had larger spleens than males, whether considering wild or domestic populations. Finally, wild mink showed greater condition dependence of spleen mass than domestic populations. Further investigations should include experimental approaches such as providing veterinary care to wild populations to assess the effects of parasites and pathogens on the immune system. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 107 , 624–631.     

Genetic variation within and among populations of the narrow endemic,delphinium viridescens (Ranunculaceae)

Delphinium viridescens Leiberg (Ranunculaceae) is a narrow endemic, known from only 17 populations in the Wenatchee Mountains of central Washington. Electrophoretic data for ten loci and approximately 50 plants from each of the 17 populations indicate high levels of variability both within and among populations. High levels of heterozygosity, coupled with a general conformance of genotype frequencies to Hardy-Weinberg expectations, suggest that D. viridescens is an outcrossing species, and outcrossing rates range from 0.391 to 1.454. Although all populations share a suite of common alleles, interpopulational differences in allele frequency were detected. Nei's genetic identities range from 0.883 to 1.000, with a mean of 0.964, suggesting only slight differentiation among populations and at least moderate levels of interpopulational gene flow. However, F_ST values indicate greater interpopulational heterogeneity. The data from this study are intended for use in developing a management plan for D. viridescens, to maintain the viability of this species, and to assess the need for its listing as threatened or endangered.     

A hitchhiker’s guide to the Maritimes: anthropogenic transport facilitates long‐distance dispersal of an invasive marine crab to Newfoundland

Aim To determine timing, source and vector for the recent introduction of the European green crab, Carcinus maenas (Linnaeus, 1758), to Newfoundland using multiple lines of evidence. Location Founding populations in Placentia Bay, Newfoundland, Canada and potential source populations in the north‐west Atlantic (NWA) and Europe. Methods We analysed mitochondrial and microsatellite genetic data from European and NWA populations sampled during 1999–2002 to determine probable source locations and vectors for the Placentia Bay introduction discovered in 2007. We also analysed Placentia Bay demographic data and shipping records to look for congruent patterns with genetic analyses. Results Demographic data and surveys suggested that C. maenas populations are established and were in Placentia Bay for several years (c. 2002) prior to discovery. Genetic data corroboratively suggested central/western Scotian Shelf populations (e.g., Halifax) as the likely source area for the anthropogenic introduction. These Scotian Shelf populations were within an admixture zone made up of genotypes from both the earlier (early 1800s) and later (late 1900s) introductions of the crab to the NWA from Europe. Placentia Bay also exhibited this mixed ancestry. Probable introduction vectors included vessel traffic and shipping, especially vessels carrying ballast water. Main conclusions Carcinus maenas overcame considerable natural barriers (i.e., coastal and ocean currents) via anthropogenic transport to become established and abundant in Newfoundland. Our study thus demonstrates how non‐native populations can be important secondary sources of introduction especially when aided by human transport. Inference of source populations was possible owing to the existence of an admixture zone in central/western Nova Scotia made up of southern and northern genotypes corresponding with the crab’s two historical introductions. Coastal vessel traffic was found to be a likely vector for the crab’s spread to Newfoundland. Our study demonstrates that there is considerable risk for continued introduction or reintroduction of C. maenas throughout the NWA.     

Characterization of 14 tetranucleotide microsatellite loci derived from Pacific herring

Spawning aggregations of Pacific herring (Clupea pallasi) often exhibit significant interannual variation in allele frequencies of neutral gene markers. We isolated 14 tetranucleotide microsatellites to examine hypothetical processes that may produce this unique genetic signal. We developed and tested primer pairs for each locus and then estimated locus variability in samples (n = 60) from two populations. The number of alleles per locus ranged from five to 49. The expected heterozygosity across loci and populations ranged from 0.20 to 0.96. These microsatellites will be useful for estimating genetic variation in herring on a fine geographical scale.