Phylogenetic position of the family Trichodontidae (Teleostei: Perciformes), with a revised classification of the perciform suborder Cottoidei

The phylogenetic relationships of the family Trichodontidae and suborder Cottoidei (and zoarcoid Bathymasteridae) are reconstructed morphologically. The monophyly of the Trichodontidae, Cottoidei, and Zoarcoidei is unambiguously supported by 14 synapomorphies, including 1 newly recognized (and also 4 synapomorphies when ACCTRAN is accepted). It is assumed that the Trichodontidae is deeply nested within the Cottoidei, and the family and Cottoidea plus Cyclopteroidea have a sister relationship, supporting a previously inferred molecular phylogenetic hypothesis. We propose that the Trichodontidae is placed into the cottoid superfamily Trichodontoidea.     

A review of otters (Carnivora: Mustelidae: Lutrinae) in Malaysia and Singapore

Four species of otters have been recorded from Malaysia and Singapore in the past: Lutra lutra (Common or Eurasian Otter), Lutra sumatrana (Hairy-nosed Otter), Lutrogale perspicillata (Smooth Otter) and Amblonyx cinereus (Oriental Small-clawed Otter). All four are listed in the Threatened Species Categories of the IUCN Red List of Threatened Animals: L. lutra is designated Vulnerable and the status of the other three Asian species are Insufficiently Known due to lack of information. From a review of the available literature and collation of museum records from Malaysia and Singapore, the past status of the four species are examined. Presently, only L. perspicillata and A. cinereus are common in Peninsular Malaysia where they are widely distributed, but both are rare in Singapore. L. sumatrana is rare but apparently still found in East Malaysia. It is possible that L. lutra did not range in Malaysia this century. Information about the habitat types, group size, range, diet and behaviour for all the species is poorly known. The available information allows a discussion of the Smooth and Small-clawed Otters only. This dearth of knowledge has hampered maintenance and breeding efforts of zoos and conservation activity.     

Novel microsatellite markers for Begonia maxwelliana and transferability to 23 Begonia species of Peninsular Malaysia

Begonias are hyper-diverse and important horticultural plants. Six polymorphic microsatellite markers were developed from CT- and GT-enriched libraries of Begonia maxwelliana. The number of alleles per locus ranged from 2 to 12 and the observed heterozygosity ranged from 0.036 to 0.813. Null alleles were detected in one locus (Bma161) after Bonferroni correction. All the six markers were amplifiable in 23 selected Begonia species with the success rates of 17–100%. On average, species of the same section as B. maxwelliana (i.e. sect. Platycentrum) yielded higher transferability (91%). These markers will be useful for population genetic studies of the genus Begonia.     

An annotated checklist of mangrove brachyuran crabs from Malaysia and Singapore

The mangrove brachyuran fauna of Singapore and Malaysia is generally regarded as well studied. This is not the case. Over a hundred brachyuran species are now known from mangroves in Peninsular and East Malaysia, a substantial part of the known fauna in these waters. In Singapore, for example, of the approximately 350 brachyurans known, 76 (i.e. ca 22%) are mangal species. The systematics of several groups remain very unsatisfactory. The taxonomy of the Sesarminae, the largest subfamily of the Grapsidae and the dominant group in most mangroves, is still very unstable, with the identities of many ecologically important genera and species still unclear. A revision is still unavailable. Until recently, representatives of the families Hymenosomatidae and Leucosiidae were unknown from mangroves. Detailed collections and studies have resulted in the discovery of new genera and species from areas as purportedly well explored as Singapore. The Sarawak mangrove brachyuran crab fauna is based almost entirely on one paper written 40 years ago whilst that of Sabah is almost unknown. Although the state of mangal brachyuran systematics in Malaysia and Singapore is still in an exploratory phase, the mangroves in these two countries are relatively well-known compared to those of the surrounding regions. The present annotated checklist of mangal brachyuran species is intended to guide future systematic work in these countries, as well as to assist ecologists and other mangrove biologists. This is especially in view of the important role of crabs in mangroves.     

Drivers of beta diversity of macroinvertebrate communities in tropical forest streams

1. There has recently been increasing interest in patterns of beta diversity but we still lack a comprehensive understanding of these patterns in various regions (e.g. the tropics), ecosystems (e.g. streams) and organism groups (e.g. invertebrates). 2. Our aim was to investigate the patterns of beta diversity of stream macroinvertebrates in relation to key environmental (i.e. stream size, pH and habitat degradation) and geographical variables (i.e. latitude, longitude, altitude) in a tropical region. We surveyed a total of 8–10 riffle sites in each of 34 streams (altogether 337 riffle sites were sampled) in Peninsular Malaysia to examine variation in macroinvertebrate community composition at within‐stream and among‐stream scales. 3. Based on test of homogeneity of dispersion, we found that the streams studied differed significantly in within‐stream variation in community composition (i.e. among‐site variation of within stream beta diversity). The patterns were similar based on Bray–Curtis coefficient on abundance data, Sorensen coefficient on presence–absence data and Simpson coefficient on presence–absence data. We also found that within‐stream beta diversity was significantly related to stream size, pH and latitude, with each of these variables individually accounting for around 20% of the variation in beta diversity in simple regressions, while the total variation explained by the three significant variables amounted to around 50% in multiple regressions. By contrast, habitat degradation, longitude and altitude were not significantly related to beta diversity. We also found that the factor drainage basin accounted for much of the variation in beta diversity in general linear models, suppressing the effects of environmental variables. 4. We concluded that within‐stream beta diversity is mainly related to a combination of the identity of a drainage basin and stream environmental factors. Our findings provide important background for stream environmental assessment and conservation planning by emphasising that (i) macroinvertebrate communities within streams are not homogeneous, but show considerable beta diversity, (ii) streams differ in their degree of within‐stream beta diversity, (iii) stream size and water pH should be considered in applied contexts related to within‐stream beta diversity and (iv) historical effects may be different in different drainage basins and may affect present‐day patterns of within‐stream beta diversity.     

Genetic structure of locally threatened cyprinid,Osteochilus melanopleurus,in Peninsular Malaysia River systems inferred from mitochondrial DNA control region

The genetic structure of the locally threatened cyprinid Osteochilus melanopleurus, collected from four locations (Gerik, Manong, Bernam and Kahang) in Peninsular Malaysia River systems, was assessed based on partial sequences of the control region (D-loop) mitochondrial DNA. A partial D-loop of 364 base pair gene was extracted from 88 individuals through PCR amplification and direct sequencing. The results show that haplotype diversity (hd = 0.7956–0.9485) was high, with low nucleotide (π = 0.0045–0.0080) variation for each of the populations examined. A molecular variance analysis (AMOVA) revealed few differences between the four populations. A Tajima D test and Fu Fs test were used to investigate the neutrality of each population, revealing that the all examined populations might experience recent population expansion or the bottleneck effect. A phylogeny tree and mismatch distribution analysis provided further evidence that three of four populations had recently expanded, as well as indicating that the Kahang population had in contrast remained stable. Overall, this study concludes that the populations of O. melanopleurus distributed throughout the river systems of Peninsular Malaysia probably originated from a single ancestral source during the last glaciation period, and should therefore be treated as a single evolutionary unit in any conservation efforts.     

Efficiency and focus of blowpipe hunting among Semaq Beri Hunter-Gatherers of Peninsular Malaysia

This paper presents quantitative data on blowpipe hunting among the Semaq Beri, a group of the aboriginal peoples of Peninsular Malaysia, with special reference to daily activity rhythms, space use, efforts, and efficiency of hunting. The role of hunting is examined in the diet of the population studied, which is in transition from a nomadic to a sedentary lifestyle. The special hunting focus on a few species (the leaf monkeys, Presbytis spp.) is examined in relation to ecology of prey items and using the optimal diet breadth model. Technological efficiencies of the Semaq Beri blowpipe and dart are compared with the Waorani of Ecuador.     

Epidemiology and risk factors associated with Anaplasma marginale infection of cattle in Peninsular Malaysia

Bovine anaplasmosis is a major concern to cattle farming in most parts of the world. Anaplasmosis negatively impacts the profitability of cattle farming by reducing the production, reproduction, and draft ability of cattle. Here, we report results from a one-year cross sectional study to determine the epidemiology and the risk factors for Anaplasma marginale infection of cattle in Peninsular Malaysia. Examination of one thousand and forty five blood samples of apparently healthy cattle from forty-three farms in all the states of Peninsular Malaysia by polymerase chain reaction (PCR) assay revealed an overall prevalence of A. marginale infection of cattle of 72.6%, showing high endemicity of this heamoprotozoan among cattle in the country. Cattle breeds, production type, herd owner, herd size, management system, farm size, farm age, prophylactic treatment against blood parasites, presence of ticks, frequency of deticking, zones, closeness to forest, closeness to waste area, closeness to human settlement and closeness to body of water were the risk factors significantly associated (P?<?0.05) with the detection of A. marginale in cattle. Results of this first molecular study on the epidemiology and risk factors for A. marginale infection of cattle from all the states of Peninsular Malaysia suggest policies and strategies for the prevention and control of the parasite to improve profitability of cattle farming in the country.     

Diversity and conservation of blackwater fishes in Peninsular Malaysia,particularly in the North Selangor peat swamp forest

One of the most extreme freshwater habitats in Peninsular Malaysia is the peat swamp forest, with dark-coloured and highly acidic waters. Surprisingly, little is known about blackwater fishes in Peninsular Malaysia. Until 1968, only 26 fish species were known from blackwaters throughout Peninsular Malaysia, of which only one can be regarded as stenotopic. A recent intensive survey of part of the North Selangor peat swamp forest yielded 47 species, of which 14 are probably stenotopic taxa. These include four undescribed species and several new records for western Peninsular Malaysia. These discoveries are significant in that they include the family Chaudhuriidae which until 1985, was not reported from Sundaic Southeast Asia, and the rare genus Encheloclarias which had not been encountered for over 50 years. The rapid rate of destruction of the peat swamp forest owing to development, forestry and agricultural activities must be halted or slowed significantly to enable the proper zoological surveys and studies to be conducted. Conservation plans and environmental impact assessments based on inadequate sampling and knowledge of species present is acutely dangerous. There are no longer substantial undisturbed blackwater peat swamp forests left in most of Peninsular Malaysia. Conservation of the remaining blackwater biotopes is critically important if extinction of many species, here regarded as economically valuable renewable resources, is to be prevented.     

Molecular phylogenetic analysis of actin genic regions fromAchlya bisexualis (Oomycota) andCostaria costata (Chromophyta)

Summary Actin genic regions were isolated and characterized from the heterokont-flagellated protists,Achlya bisexualis (Oomycota) andCostaria costata (Chromophyta). Restriction enzyme and cloning experiments suggested that the genes are present in a single copy and sequence determinations revealed the existence of two introns in theC. costata actin genic region. Phylogenetic analyses of actin genic regions using distance matrix and maximum parsimony methods confirmed the close evolutionary relationship ofA. bisexualis andC. costata suggested by ribosomal DNA (rDNA) sequence comparisons and reproductive cell ultrastructure. The higher fungi, green plants, and animals were seen as monophyletic groups; however, a precise order of branching for these assemblages could not be determined. Phylogenetic frameworks inferred from comparisons of rRNAs were used to assess rates of evolution in actin genic regions of diverse eukaryotes. Actin genic regions had nonuniform rates of nucleotide substitution in different lineages. Comparison of rates of actin and rDNA sequence divergence indicated that actin genic regions evolve 2.0 and 5.3 times faster in higher fungi and flowering plants, respectively, than their rDNA sequences. Conversely, animal actins evolve at approximately one-fifth the rate of their rDNA sequences.     

Are social media reports useful for assessing small ape occurrence? A pilot study from Peninsular Malaysia

Citizen science-based research has been used effectively to estimate animal abundance and breeding patterns, to monitor animal movement, and for biodiversity conservation and education. Here, we evaluate the feasibility of using social media observations to assess the distribution of small apes in Peninsular Malaysia. We searched for reports of small ape observations in Peninsular Malaysia on social media (e.g., blogs, Facebook, Instagram, Twitter, YouTube, iNaturalist, etc.), and also used online, radio, print messaging, and word of mouth to invite citizen scientists such as birders, amateur naturalists, hikers, and other members of the public to provide information about small ape observations made during their activities. These reports provided new information about the occurrence of all three species of small apes (Hylobates agilis, Hylobates lar, and Symphalangus syndactylus) in Peninsular Malaysia. Social media users reported observations of small apes in almost every state. Despite the fact that small apes are believed to occur primarily in the interior of large forested areas, most observations were from fairly small (<100 km²) forests near areas of high traffic and high human population (roads and urban areas). This suggests that most outdoor enthusiasts primarily visit well-traveled and easily accessible areas, which results in biased sampling if only incidental observations reported on social media are used. A more targeted approach specifically soliciting reports from citizen scientists visiting large, less-accessible forests may result in better sampling in these habitats. Social media reports indicated the presence of small apes in at least six habitats where they had not been previously reported. We verified the reported data based on whether reports included a date, location, and uploaded photographs, videos and/or audio recordings. Well-publicized citizen science programs may also build awareness and enthusiasm about the conservation of vulnerable wildlife species.     

对翼手目的单起源与双起源假说的介绍

本文介绍了有关翼手目起源的两种主要假说——单起源假说和双起源假说, 并分别从形态、生化和分子等方面介绍对两种假说的相关论证及论证中的缺点和相应解决方案。同时提出有关该研究的前景及存在的相关问题, 望能为我国学者提供参考。     

Breeding seasonality among long-tailed macaques,Macaca fascicularis,in Peninsular Malaysia

The females among more than 7000 long-tailed macaques, Macaca fascicularis,that had recently been trapped for biomedical research were examined for pregnancy. The animals were taken from the wild in the north of Peninsular Malaysia during the period 1978 to 1979 and in the south from 1978 to 1982. Both samples showed some pregnancies in all months of the year and a peak during the months of May to July. Additional peaks in other months in some years showed that, while the midyear pregnancy peak was significant, it was not as marked a phenomenon as is the breeding peak in many other species. This might be due to the complexity and unpredictability of both the climate and the macaques’ food supply in Peninsular Malaysia. The additional peaks also illustrated the pitfalls of generalizing about breeding seasonality on the basis of small samples.