Effects of contaminants on genetic patterns in aquatic organisms: a review.

There is increasing awareness of the need to evaluate the effects of contaminants at the population level. Genetic techniques offer a powerful approach to assess contaminant-induced changes in populations. Yet studies to date are relatively few and not always carefully designed to maximize the utility inherent in this approach. We present a summary of contemporary genetic assessment methods and a review of published studies of genetic effects in field-exposed aquatic organisms. We discuss evaluations of genetic patterns that use genetic adaptation, allozyme variation, and molecular genetic (DNA) variation. Direct tests of genetic adaptation are very effective in establishing a concrete, and potentially deleterious population-level effect of contaminant exposure, but they are difficult to accomplish with most field-exposed organisms. Allozyme surveys are relatively simple and common, and may provide data that are suggestive of contaminant effects. However, these are rarely conclusive, primarily because few allozyme loci are variable and these few loci represent extremely small portions of the genome. Molecular genetic techniques have the potential to be very effective. But, there is a tendency to emphasize the power of the techniques, rather than the underlying causes of the molecular genetic patterns observed. The strength of the conclusions of each study varies widely, partially derived from variation in the strength of the techniques. We caution that all these approaches are greatly improved by careful experimental design that includes adequate numbers of reference and contaminated sites and sample size. In addition, careful exposure assessment is required, including site and tissue chemistry, biomarker responses, and measures of potentially deleterious effects, such as DNA damage, or reduced reproductive output or survival.     

Spread of parasites and diseases of aquatic organisms by acclimatization: a short review

The influence of transportation and acclimatization of fishes and shellfishes on their parasites and pathogens is discussed. It has been shown that aquatic organisms lose most of their parasites during the period of establishment, but some species may remain. In most instances these are parasites with direct development (Myxosporea, Monogenea, Crustacea). Species with intermediate hosts, but which utilize many species of invertebrates, establish more easily than those which have specific invertebrate intermediate hosts. If there are closely related host species to those introduced into the water body, parasites brought to it can transfer to these related species. This may result in a high infection of the native species and significant mortality.     

The role of Japanese macaques (Macaca fuscata) as endozoochorous seed dispersers on Kinkazan Island, northern Japan

We studied the characteristics of seeds within faeces, an important aspect of endozoochorous seed dispersal, in Japanese macaques Macaca fuscata inhabiting Kinkazan Island, northern Japan. We intermittently collected faecal samples from 1999 to 2009 (N = 1294) and examined the rate of seed occurrence, species/life-form composition, number of seeds, and their intact rate. Seeds were found within faecal samples during every month, but their characteristics changed monthly: the rate of seed occurrence and the number of plant species within faecal samples were greater in summer and fall, and the intact rate and number of intact seeds observed within single faecal samples were also higher during these seasons than spring and winter. These results suggest that Japanese macaques on Kinkazan act as seed dispersers in summer and fall and that they disperse intact seeds into wider areas within the forest through defecation. During the study period, we observed seeds from a total of 35 plant species from 22 families in our samples. In addition to those of woody plants, we also observed seeds from as many as 12 herbaceous plants, for which sympatric sika deer (Cervus nippon) have historically been considered the sole seed dispersal agents. The intact rate of seeds was significantly negatively correlated with the seeds’ mean cubic diameter, and this relationship was strengthened for non-fleshy fruits. We also conducted regional comparisons of the characteristics of defecated seeds in order to address whether regional variations in the diet of the macaques affect their efficacy as seed dispersers, both in terms of quantity and quality. Macaques living in the natural habitats of Kinkazan and Yakushima dispersed more seeds of tall tree species than do macaques inhabiting the human-altered areas of in Shimokita and Kashima. The number of plant species represented within single faecal samples also varied geographically, being greater in Yakushima. This pattern likely resulted from Yakushima's warm temperate climate, as the other three study sites occur in the cool temperate region. Our results suggest that the composition of seeds dispersed by Japanese macaques is not rigid, but is determined instead by the vegetation found in a given habitat.     

Dispersal of aquatic organisms by waterbirds: a review of past research and priorities for future studies

1. Inland wetlands constitute ecological islands of aquatic habitat often isolated by huge areas of non-suitable terrestrial habitats. Although most aquatic organisms lack the capacity to disperse by themselves to neighbouring catchments, many species present widespread distributions consistent with frequent dispersal by migratory waterbirds.
2. A literature review indicates that bird-mediated passive transport of propagules of aquatic invertebrates and plants is a frequent process in the field, at least at a local scale. Both endozoochory (internal transport) and ectozoochory (external transport) are important processes.
3. The characteristics of the dispersed and the disperser species that facilitate such transport remain largely uninvestigated, but a small propagule size tends to favour dispersal by both internal and external transport.
4. We review the information currently available on the processes of waterbird-mediated dispersal, establishing the limits of current knowledge and highlighting problems with research methods used in previous studies. We also identify studies required in the future to further our understanding of the role of such dispersal in aquatic ecology.     

Direct experimental evidence for alternative stable states: a review

A large number of studies have presented empirical arguments for the existence of alternative stable states (ASS) in a wide range of ecological systems. However, most of these studies have used non-manipulative, indirect methods, which findings remain open for alternative explanations. Here, we review the direct evidence for ASS resulting from manipulation experiments. We distinguish four conclusive experimental approaches which test for predictions made by the hysteresis effect: (1) discontinuity in the response to an environmental driving parameter, (2) lack of recovery potential after a perturbation, (3) divergence due to different initial conditions and (4) random divergence. Based on an extensive literature search we found 35 corresponding experiments. We assessed the ecological stability of the reported contrasting states using the minimum turnover of individuals in terms of life span and classified the studies according to 4 categories: (1) experimental system, (2) habitat type, (3) involved organisms and (4) theoretical framework. 13 experiments have directly demonstrated the existence of alternative stable states while 8 showed the absence of ASS in other cases. 14 experiments did not fulfil the requirements of a conclusive test, mostly because they applied a too short time scale. We found a bias towards laboratory experiments compared to field experiments in demonstrating bistability. There was no clear pattern of the distribution of ASS over categories. The absence of ASS in 38% of the tested systems indicates that ASS are just one possibility of how ecological systems can behave. The relevance of the concept of ASS for natural systems is discussed, in particular under consideration of the observed laboratory bias, perturbation frequency and variable environments. It is argued, that even for a permanently transient system, alternative attractors may still be of relevance.     

Self-deception as self-signalling: a model and experimental evidence

Self-deception has long been the subject of speculation and controversy in psychology, evolutionary biology and philosophy. According to an influential ‘deflationary’ view, the concept is an over-interpretation of what is in reality an instance of motivationally biased judgement. The opposite view takes the interpersonal deception analogy seriously, and holds that some part of the self actively manipulates information so as to mislead the other part. Building on an earlier self-signalling model of Bodner and Prelec, we present a game-theoretic model of self-deception. We propose that two distinct mechanisms collaborate to produce overt expressions of belief: a mechanism responsible for action selection (including verbal statements) and an interpretive mechanism that draws inferences from actions and generates emotional responses consistent with the inferences. The model distinguishes between two modes of self-deception, depending on whether the self-deceived individual regards his own statements as fully credible. The paper concludes with a new experimental study showing that self-deceptive judgements can be reliably and repeatedly elicited with financial incentives in a categorization task, and that the degree of self-deception varies with incentives. The study also finds evidence of the two forms of self-deception. The psychological benefits of self-deception, as measured by confidence, peak at moderate levels.     

Inter-locus interactions: A review of experimental evidence

In quantitative genetics, experiments designed to elucidate the nature of gene action and hence the importance of epistasis, have included analysis of genetic differences among individuals in random mating populations (partitioning of genetic variation, analysis of selection responses), of differences among inbred lines or selected populations (variance components in crosses among lines, chromosome analysis using genetic markers and crossover suppression), of the effects of inbreeding, and of population structure. Evidence in population genetic studies has come from studies of linkage disequilibrium and co-adaptation in natural populations, and of multilocus fitness estimation and linkage disequilibrium and associative overdominance in experimental populations. While it is clear that epistasis does contribute to the genetic variation in some quantitative characters, and in particular reproductive fitness, much of the evidence is equivocal and unsatisfying.     

Helminths and protozoans of aquatic organisms as bioindicators of chemical pollution

There is no doubt that the aquatic environments receive large quantities of chemicals as consequence of human activities and that those substances have a detrimental effect on human health. Despite the obvious need for effective disposal of these substances, we need to understand and prevent the outcome of harmful environmental exposures. Thus, we need biomarkers and bioindicators to advance our understanding to these harmful exposures and their biological effects. In the last three decades a large number of publications has suggested that aquatic organisms and their parasites (mainly helminths and ciliate protozoans) are useful bioindicators of chemical pollution. However, the main weakness of this approach is that after exposure the population size of these parasites can increase or decrease without a consistent pattern. I suggest that this is in part due to the lack of focus on the correct spatial or temporal scales at which the environment is acting over our study object. Thus, I propose to use spatially explicit (= georeferenced) data for determining whether there is spatial structure in our study area. Spatial structure is the tendency of nearby samples to have attribute values more similar than those farther apart. These attributes are shaped by environmental variables acting at specific spatial and temporal scales. Thus, I suggest to consider these tools for determining the correct spatial or temporal scales of study, but also to record pollutant concentrations, bioindicators, biomarkers and parasites at individual host level. Combining this information with long-term monitoring programs is likely to improve our understanding of the effects of chemical pollutants over the aquatic environments.     

DNA adducts as a biomarker of polycyclic aromatic hydrocarbon exposure in aquatic organisms: relationship to carcinogenicity

The use of DNA adduct measurement as a biomarker of exposure to polycyclic aromatic hydrocarbons (PAHs) is now well established in ecotoxicology. In particular, DNA adduct levels in aquatic organisms has been found to produce a better correlation with PAH exposure than PAH concentrations in organisms. DNA adducts levels are most commonly determined using the ³²P-postlabelling assay which measures total aromatic adducts. The relationship between relative DNA adduct formation and carcinogenicity has been investigated for a number of carcinogenic and non-carcinogenic PAHs using an in vitro system. Our results demonstrate that relatively high levels of DNA adducts can be produced by some non-carcinogenic PAHs, while other non-carcinogenic compounds do not produce detectable adducts. In addition, it has been shown that all carcinogenic PAHs investigated produce DNAadducts and that a relationship exists between relative adduct formation and carcinogenic potency. An investigation of adduct levels in fish liver and crustacean hepatopancreas in Oxley Ck, Brisbane has shown that higher than expected DNA adduct levels were correlated with the presence of carcinogenic and non-carcinogenic PAHs with high relative adduct forming potential.     

DNA adducts as a biomarker of polycyclic aromatic hydrocarbon exposure in aquatic organisms: relationship to carcinogenicity

The use of DNA adduct measurement as a biomarker of exposure to polycyclic aromatic hydrocarbons (PAHs) is now well established in ecotoxicology. In particular, DNA adduct levels in aquatic organisms has been found to produce a better correlation with PAH exposure than PAH concentrations in organisms. DNA adducts levels are most commonly determined using the ³²P-postlabelling assay which measures total aromatic adducts. The relationship between relative DNA adduct formation and carcinogenicity has been investigated for a number of carcinogenic and non-carcinogenic PAHs using an in vitro system. Our results demonstrate that relatively high levels of DNA adducts can be produced by some non-carcinogenic PAHs, while other non-carcinogenic compounds do not produce detectable adducts. In addition, it has been shown that all carcinogenic PAHs investigated produce DNAadducts and that a relationship exists between relative adduct formation and carcinogenic potency. An investigation of adduct levels in fish liver and crustacean hepatopancreas in Oxley Ck, Brisbane has shown that higher than expected DNA adduct levels were correlated with the presence of carcinogenic and non-carcinogenic PAHs with high relative adduct forming potential.     

Perspective: purging the genetic load: a review of the experimental evidence

Inbreeding depression, the reduction in fitness that accompanies inbreeding, is one of the most important topics of research in evolutionary and conservation genetics. In the recent literature, much attention has been paid to the possibility of purging the genetic load. If inbreeding depression is due to deleterious alleles, whose effect on fitness are negative when in a homozygous state, then successive generations of inbreeding may result in a rebound in fitness due to the selective decrease in frequency of deleterious alleles. Here we examine the experimental evidence for purging of the genetic load by collating empirical tests of rebounds in fitness-related traits with inbreeding in animals and plants. We gathered data from 28 studies including five mammal, three insect, one mollusc, and 13 plant species. We tested for purging by examining three measures of fitness-component variation with serial generations of inbreeding: (1) changes in inbreeding depression, (2) changes in fitness components of inbred lines relative to the original outbred line, and (3) purged population (outcrossed inbred lines) trait means as a function of ancestral outbred trait means. Frequent and substantial purging was found using all three measures, but was particularly pronounced when tracking changes in inbreeding depression. Despite this, we found little correspondence between the three measures of purging within individual studies, indicating that the manner in which a researcher chooses to estimate purging will affect interpretation of the results obtained. The discrepancy suggests an alternative hypothesis: rebounds in fitness with inbreeding may have resulted from adaptation to laboratory conditions and not to purging when using outcrossed inbred lines. However, the pronounced reduction in inbreeding depression for a number of studies provides evidence for purging, as the measure is likely less affected by selection for laboratory conditions. Unlike other taxon-specific reviews on this topic, our results provide support for the purging hypothesis, but firm predictions about the situations in which purging is likely or the magnitude of fitness rebound possible when populations are inbred remain difficult. Further research is required to resolve the discrepancy between the results obtained using different experimental approaches.     

Reliability of macaques as seed dispersers

Seed dispersal is an ecological process crucial for forest regeneration and recruitment. To date, most studies on frugivore seed dispersal have used the seed dispersal effectiveness framework and have documented seed-handling mechanisms, dispersal distances and the effect of seed handling on germination. In contrast, there has been no exploration of “disperser reliability” which is essential to determine if a frugivore is an effective disperser only in particular regions/years/seasons or across a range of spatio-temporal scales. In this paper, we propose a practical framework to assess the spatial reliability of frugivores as seed dispersers. We suggest that a frugivore genus would be a reliable disperser of certain plant families/genera if: (a) fruits of these plant families/genera are represented in the diets of most of the species of that frugivore, (b) these are consumed by the frugivore genus across different kinds of habitats, and (c) these fruits feature among the yearly staples and preferred fruits in the diets of the frugivore genus. Using this framework, we reviewed frugivory by the genus Macaca across Asia to assess its spatial reliability as seed dispersers. We found that the macaques dispersed the seeds of 11 plant families and five plant genera including at least 82 species across habitats. Differences in fruit consumption/preference between different groups of macaques were driven by variation in plant community composition across habitats. We posit that it is essential to maintain viable populations of macaques across their range and keep human interventions at a minimum to ensure that they continue to reliably disperse the seeds of a broad range of plant species in the Anthropocene. We further suggest that this framework be used for assessing the spatial reliability of other taxonomic groups as seed dispersers.     

Integrative hypothesis for Huntington's disease: a brief review of experimental evidence

Huntington's disease (HD) is a demential, neurodegenerative inheritable disease affecting middle-aged patients. HD is characterized by uncontrolled choreiform movements, psychiatric symptoms and cognitive decline. Histopathological changes in HD brains reveal a considerable damage to basal ganglia, particularly affecting middle-sized spiny neurons from the caudate-putamen region. Neurochemical changes are specifically oriented to deplete GABAergic and cholinergic systems, while molecular alterations include an increased expression of CAG trinucleotide at exon 1 from the huntingtin (htt) gene, as well as aggregation of mutant htt. Although several hypotheses regarding the mechanisms by which neurotoxicity is triggered in HD brains have been suggested on the basis of experimental evidence, so far it remains not clear which of them are predominant or whether they are complementary. Recent experimental evidence through transgenic mice models reveal an interesting interaction between expanded CAG triplets, mutant htt, and the increase in toxic metabolites from the kynurenine pathway. Further evidence supports the assumption that different toxic mechanisms (i.e. excitotoxicity, energy metabolism impairment, inflammatory events, oxidative stress, etc.) are confluent and depend on each other. In this review we will briefly summarize some of those findings and propose a final integrative hypothesis for HD.     

Genotoxicological studies in aquatic organisms: an overview

Substantial progress has been made in the lat two decades to evaluate the impact of physical and chemical genotoxins in aquatic organisms. This overview (a) summarises the major high lights in this stimulating area of research, (b) compares the developments in this field with the developments in mammalian genotoxicological studies, where appropriate, (c) introduces 18 different articles presented in this special issue of Mutation Research in the backdrop of main advances and , (d) hypothesises on future directions of research in this exciting field.     

Herbivorous mammals as seed dispersers in a Mediterranean dehesa

Endozoochrous seed dispersal by herbivorous mammals has been verified repeatedly and its possible influence on the structure and function of herbaceous communities has been suggested. Quantitative studies, however, are lacking in the field of seed dispersal via the dung of herbivore guilds in little-altered environments. The present paper analyses seed dispersal via rabbit, fallow deer, red deer and cow dung in a Mediterranean dehesa (open woodland used for hunting and ranching) during the seeding season. Dung seed content was determined by the glasshouse cultivation of eight dung samples from each herbivore, collected fortnightly between February and August. The four herbivores disperse many seeds (spring averages are 6–15 seeds per gram of dry dung and maxima of 25–70) from a large number of species (totals between 52 and 78). Dispersal seems to be mainly determined by seed production of the plant comminity. This is reflected in (i) the dissemination of a high percentage of the species present in the dehesa, (ii) great seasonal variability, related to seed production, in the amount of seeds and number of species dispersed, and (iii) a high semi-quantitative similarity of seed content in the four types of herbivore dung throughout the year. There is also important quantitative variation that depends on animal traits and feeding habits. These results and the characteristics of species found in dung suggest the adaptation of plant species to the dispersal of their seeds via herbivore gut. This process may well have profound implications for vegetation dynamics and the evolution of plant traits.     

Thorns as induced defenses: experimental evidence

Summary We report evidence from controlled experiments that long straight thorns deter herbivory by browsers. Cut branches of three woody species that had their thorns removed suffered significantly greater herbivory by a tethered goat than did paired intact branches. Branches on living Acacia seyal plants that had their thorns removed suffered significantly greater herbivory by a wild population of free-ranging giraffes than did intact branches on the same plants. These differences in herbivory resulted in long term losses of branch length in clipped as opposed to control branches. In addition, branches within reach of giraffes produced longer thorns and a greater density of thorns than did higher branches. These results imply that increased thorn length is an induced defense.No significance should be attached to order of authorship     

Effect of nanoparticles on aquatic organisms

This paper summarizes the data on the effect of engineered nanoparticles on aquatic organisms. The issues of penetration and accumulation of nanoparticles in the body of aquatic organisms and their toxic effect, biotransformation, and migration along food webs are considered. It is demonstrated that the behavior of nanomaterials in the environment and their effect on living organisms have been studied insufficiently and require close attention, because their release into the environment will increase in the very near future.     

Cell-wall-degrading enzymes of aquatic hyphomycetes: a review

Reports of cell-wall-degrading enzymes of aquatic hyphomycetes are reviewed, including pectinases, cellulases, hemicellulases, laminarinases and chitinases and the ability of these fungi to degrade lignin and straw. New evidence of enzymic activity is presented for 14 species.     

Induced tolerance expressed as relaxed behavioural threat response in millimetre-sized aquatic organisms

Natural selection shapes behaviour in all organisms, but this is difficult to study in small, millimetre-sized, organisms. With novel labelling and tracking techniques, based on nanotechnology, we here show how behaviour in zooplankton (Daphnia magna) is affected by size, morphology and previous exposure to detrimental ultraviolet radiation (UVR). All individuals responded with immediate downward swimming to UVR exposure, but when released from the threat they rapidly returned to the surface. Large individuals swam faster and generally travelled longer distances than small individuals. Interestingly, individuals previously exposed to UVR (during several generations) showed a more relaxed response to UVR and travelled shorter total distances than those that were naive to UVR, suggesting induced tolerance to the threat. In addition, animals previously exposed to UVR also had smaller eyes than the naive ones, whereas UVR-protective melanin pigmentation of the animals was similar between populations. Finally, we show that smaller individuals have lower capacity to avoid UVR which could explain patterns in natural systems of lower migration amplitudes in small individuals. The ability to change behavioural patterns in response to a threat, in this case UVR, adds to our understanding of how organisms navigate in the ‘landscape of fear’, and this has important implications for individual fitness and for interaction strengths in biotic interactions.