Analyzing reaction norm variation in the field vs. greenhouse: Comparing studies of plasticity and its adaptive value in two species of Erodium

Despite a wide range of experiments characterizing patterns of selection on phenotypic plasticity in controlled environments there has been virtually no research assessing the extent to which these results reflect selection on plasticity expressed in natural populations. To test how well the patterns observed in controlled experiments match the patterns in field populations, we present two case studies in which we characterized the fitness consequences of plasticity both under controlled lath house conditions and in the field. We quantified selection on plasticity in response to soil nutrient variation in two annual plant species, Erodium cicutarium and Erodium brachycarpum. For both species, families collected from the same source populations were used in both field and lath house experiments. We ask whether the qualitative results obtained from field and controlled environment experiments are equivalent. In two cases we observed selection on the expression of plasticity by E. brachycarpum in the field while controlled environment experiments indicated that plasticity was selectively neutral. In three other cases we observed differences in the pattern of plasticity expressed in the controlled environment experiment relative to the field resulting in conflicting results regarding the form of trait expression favored by selection. Based on these results, we argue that the extent to which results from controlled environments can be accurately extrapolated to naturally occurring populations depends on whether treatments imposed in a controlled environment accurately mimic environmental variation in the field and induce plasticity in traits of interest. Ideally any controlled environment experiment characterizing plasticity would be paired with field survey data of environmental and phenotypic variation within naturally occurring populations.     

Assessing the concept of controlled experiments in science teachers

Biology teachers, attending a post-graduate training course, were given a written test in which they had to identify the controlled set-up in two different experiments. A teaching strategy was designed to help the subjects to construct and consolidate an understanding of controlled experiments, in line with scientific inquiry methods, by following the process of hypothesis, formulation and testing.     

Application of a model of scale dependence to quantify scale domains in open predation experiments

We use a model of open predation experiments to define scale domains that differ in terms of the controlling processes and scale dependence of predator impacts. For experimental arenas that are small compared to the movements of the prey (small scale domain) the model predicts that predator impacts are scale independent and controlled by prey movements. For arenas of intermediate scale we predict that predator impacts are scale dependent and controlled by both prey movements and direct predation, and for the largest scale domain we predict weak scale dependence and predation control.
We propose that the scale‐domain concept is useful when designing and interpreting field experiments. As an illustration we apply the concept to experiments examining predator effects on the stream benthos. First, we test two key assumptions of the underlying model: that area‐specific prey migration rates decrease with increasing size of experimental arenas and that predation rates are independent of arena size. For this purpose we used published estimates of prey emigration and predator consumption rates for nine studies examining the effects of stream predators on benthic prey. We found that prey per capita emigration rates but not predation rates decreased with increasing arena length.
Second, we demonstrate a method for identifying the scale domain of real experiments. The model of predation experiments was parameterized using experimental data and the expected spatial and temporal scale dependence of predator impacts on prey in these experiments was simulated. The simulations suggest that the studies conducted in the largest arenas (length 15–35 m) should be classified as large‐scale, consumption‐controlled experiments, whereas the experiments conducted in smaller arenas (length 1.5–6 m) should be classified as small or intermediate‐scale. We also attempted to determine the scale domain of the experiments in a large data set, including results from most published stream predation experiments. The majority of arenas used in these experiments (73%) were smaller than 1 m in length. Our data on the scale dependence of predation and prey migration rate suggest that experiments in this scale range (<1 m) should be classified as small‐scale, movement‐controlled experiments for most prey taxa.     

Effect of Nisin’s Controlled Release on Microbial Growth as Modeled for Micrococcus luteus

The need for safe food products has motivated food scientists and industry to find novel technologies for antimicrobial delivery for improving food safety and quality. Controlled release packaging is a novel technology that uses the package to deliver antimicrobials in a controlled manner and sustain antimicrobial stress on the targeted microorganism over the required shelf life. This work studied the effect of controlled release of nisin to inhibit growth of Micrococcus luteus (a model microorganism) using a computerized syringe pump system to mimic the release of nisin from packaging films which was characterized by an initially fast rate and a slower rate as time progressed. The results show that controlled release of nisin was strikingly more effective than instantly added (“formulated”) nisin. While instant addition experiments achieved microbial inhibition only at the beginning, controlled release experiments achieved complete microbial inhibition for a longer time, even when as little as 15% of the amount of nisin was used as compared to instant addition.     

A Study on Polymorphism in Aster tripolium L. (Sea Aster)

Abstract: Genotypic and environmental variation in Aster tripolium L. was studied in common garden experiments and in transplantation experiments in different saltmarsh sites along the estuarine gradient of the Westerschelde and along the elevation gradient of individual saltmarshes. Analysis of the variation in a number of morphologic characters of the inflorescences indicated that this variation is both environmentally as well as genetically controlled. Morphologic differences between an Aster tripolium population of a brackish marsh and a number of populations of a saline marsh were unchanged whether the plants were growing in their original habitat or in a transplant habitat. The population from the brackish marsh had smaller inflorescences with ray florets and a predominantly biennial life cycle, in contrast with the populations of the saline marsh, which had larger inflorescences usually without or with a few ray florets and showed a tendency to a perennial life cycle. We concluded that the variation between the populations of the saline and the brackish marsh is mainly genetically controlled, while the variation within the saline marsh is mainly environmentally controlled.     

The control of wet bubble disease of mushrooms caused by Mycogone perniciosa

In experiments on the control of Mycogone perniciosa there was a good relationship between yield, disease incidence and the rate of benomyl applied to the casing. Casing treatment controlled the disease irrespective of time of inoculation. Benomyl controlled the disease in all experiments and good results were also achieved with thiophanate methyl and to a lesser extent with thiabendazole. Bioassay of sporophores showed the presence of an inhibitory substance from benomyl and thiophanate methyl treatments even after 6 wk of cropping.     

The Earthtron facility for below-ground manipulation study

A controlled environmental facility is necessary for investigation of the interaction between above-ground and below-ground components in microcosm experiments. The Earthtron is a simple computer-controlled chamber simulating natural environments: diurnal light/dark cycles, and separately controlled soil and air temperature, humidity and CO₂ concentration. In soil core incubation experiments, the Earthtron was able to simulate the dynamics of soil temperature field conditions. Environmental control also affects the dynamics of soil water and distribution patterns of nutrients in the microcosm, linking to the distribution of plant roots and soil biota. The Earthtron can not only reproduce field conditions but also predict the effects of global climatic change on terrestrial ecosystems.     

Measuring selection coefficients below 10(-3): method, questions, and prospects

Measuring fitness with precision is a key issue in evolutionary biology, particularly in studying mutations of small effects. It is usually thought that sampling error and drift prevent precise measurement of very small fitness effects. We circumvented these limits by using a new combined approach to measuring and analyzing fitness. We estimated the mutational fitness effect (MFE) of three independent mini-Tn10 transposon insertion mutations by conducting competition experiments in large populations of Escherichia coli under controlled laboratory conditions. Using flow cytometry to assess genotype frequencies from very large samples alleviated the problem of sampling error, while the effect of drift was controlled by using large populations and massive replication of fitness measures. Furthermore, with a set of four competition experiments between ancestral and mutant genotypes, we were able to decompose fitness measures into four estimated parameters that account for fitness effects of our fluorescent marker (α), the mutation (β), epistasis between the mutation and the marker (γ), and departure from transitivity (τ). Our method allowed us to estimate mean selection coefficients to a precision of 2 × 10(-4). We also found small, but significant, epistatic interactions between the allelic effects of mutations and markers and confirmed that fitness effects were transitive in most cases. Unexpectedly, we also detected variation in measures of s that were significantly bigger than expected due to drift alone, indicating the existence of cryptic variation, even in fully controlled experiments. Overall our results indicate that selection coefficients are best understood as being distributed, representing a limit on the precision with which selection can be measured, even under controlled laboratory conditions.     

Spatially resolved diffuse imaging for high‐speed depth estimation of jet injection

We investigate the use of spatially resolved diffuse imaging to track a fluid jet delivered at high speed into skin tissue. A jet injector with a short needle to deliver drugs beneath the dermis, is modified to incorporate a laser beam into the jet, which is ejected into ex vivo porcine tissue. The diffuse light emitted from the side and top of the tissue sample is recorded using high‐speed videography. Similar experiments, using a depth‐controlled fiber optic source, generate a reference dataset. The side light distribution is related to source depth for the controlled‐source experiments and used to track the effective source depth of the injections. Postinjection X‐ray images show agreement between the jet penetration and ultimate light source depth. The surface light intensity profile is parameterized with a single parameter and an exponential function is used to relate this parameter to source depth for the controlled‐source data. This empirical model is then used to estimate the effective source depth from the surface profile of the injection experiments. The depth estimates for injections into fat remain close to the side depth estimates, with a root‐mean‐square error of 1.1 mm, up to a source depth of 8 mm.      

An improved method with computer registration of fermentation activities of microorganisms

This paper describes a computer controlled fermentation system that can being enlarged to do 8 titration experiments simultaneously using one low budget microcomputer. Thus long term fermentation experiments as well as large quantities of fermentations can be done easily.     

Geographic variation in sexual selection among populations of an iguanid lizard,Sauromalus obesus (=ater)

Abstract.— Geographic variation in selection pressures may result in population divergence and speciation, especially if sexual selection varies among populations. Yet spatial variation in targets and intensity of sexual selection is well studied in only a few species. Even more rare are simultaneous studies of multiple populations combining observations from natural settings with controlled behavioral experiments. We investigated how sexual selection varies among populations of the chuckwalla, Sauromalus obesus. Chuckwallas are sexually dimorphic in color, and males vary in coloration among populations. Using field observations and multiple regression techniques, we investigated how sexual selection acts on various male traits in three populations in which males differed in coloration. The influence of sexual selection on male coloration was then investigated in more detail using controlled experiments. Results from field observations indicate that phenotypic selection was acting on territory quality in all three populations. In two populations, selection was also acting either directly or indirectly on male coloration. Male color likely functions as an indicator of food resources to females because male color is based partly on carotenoid pigments. In controlled experiments, significantly more females from these two populations chose males with brighter colors over dull males, a result consistent with studies on carotenoid pigments in other taxa. In a third population, no evidence of sexual selection on male coloration was found in either the field study or controlled experiment. Lack of female preferences for male color in this population, in which chuckwalla densities are low and home ranges are large, may result from searching costs to females.     

植物生理生态学研究中的控制实验和测定仪器新进展

 现代植物生理生态学的发展是和测定仪器的进步同步进行的。小型轻便、智能、性能优良和高自动化程度是植物生理生态学仪器发展的必然趋势。该文以光合生理生态学的仪器为例,概述了该领域测定仪器的发展趋势及对学科发展的重要作用,并讨论了控制实验和实验设计中的假重复问题。     

Efficiency of photostimulation controlled by subject’s EEG decreases under the conditions of feedback delay

One of the central problems in the study of brain–computer interface and the processes of operant conditioning is the optimal organization of feedback signals. In this paper we have analyzed the question about comparative efficiency of immediate or 2.56-s delayed presentation of feedback signals as photic stimulation automatically controlled by subject’s electroencephalogram (EEG). Strictly controlled experiments showed a significant increase in EEG power and positive shifts in subjective characteristics only under the minimum feedback delay, i.e., in cases where photic stimuli are controlled directly by the current EEG characteristics of the subjects.     

Influence of the Gas-Water Interface on Transport of Microorganisms through Unsaturated Porous Media

In this article, a new mechanism influencing the transport of microorganisms through unsaturated porous media is examined, and a new method for directly visualizing bacterial behavior within a porous medium under controlled chemical and flow conditions is introduced. Resting cells of hydrophilic and relatively hydrophobic bacterial strains isolated from groundwater were used as model microorganisms. The degree of hydrophobicity was determined by contact-angle measurements. Glass micromodels allowed the direct observation of bacterial behavior on a pore scale, and three types of sand columns with different gas saturations provided quantitative measurements of the observed phenomena on a porous medium scale. The reproducibility of each break-through curve was established in three to five repeated experiments. The data collected from the column experiments can be explained by phenomena directly observed in the micromodel experiments. The retention rate of bacteria is proportional to the gas saturation in porous media because of the preferential sorption of bacteria onto the gas-water interface over the solid-water interface. The degree of sorption is controlled mainly by cell surface hydrophobicity under the simulated groundwater conditions because of hydrophobic forces between the organisms and the interfaces. The sorption onto the gas-water interface is essentially irreversible because of capillary forces. This preferential and irreversible sorption at the gas-water interface strongly influences the movement and spatial distribution of microorganisms.     

Homologous recombination: from model organisms to human disease

Recent experiments show that properly controlled recombination between homologous DNA molecules is essential for the maintenance of genome stability and for the prevention of tumorigenesis.     

Mechanical stimulation in wheat triggers age- and dose-dependent alterations in growth,development and grain characteristics

Background and AimsWheat crops are exposed to a range of mechanical stimulations in their natural environment, yet we know very little about their response to such conditions. The aim of this study was to better understand the effect of mechanical stimulation on wheat growth and development, stem mechanical properties and grain measures. We focused on the following questions: (1) Does plant age affect the response to mechanical stimulation? (2) Is there a minimum threshold for the perception of mechanical stimuli? (3) Is the effect of manual brushing different to natural wind stimulation?MethodsFor age– and dose–response experiments, wheat plants were grown under controlled glasshouse conditions with brushing treatments applied using a purpose-built rig. The results of the controlled experiments are compared with those from an outside experiment where wheat plants were exposed to natural wind, with or without additional brushing. Detailed phenotypic measurements were conducted and treatment effects on grain characteristics were determined using micro-computed tomography imaging.Key ResultsTwo-week-old wheat plants were particularly sensitive to mechanical stimulation by controlled brushing treatments. Amongst others, plants exhibited a large reduction in height and grain yield, and an increase in tillers, above-ground biomass and stiffness of stem segments. Plants responded significantly to doses as small as one daily brushstroke. Outdoor experiments by and large confirmed results from controlled environment experiments.ConclusionsThe morphological and developmental response to mechanical brushing treatment, in relation to vegetative above-ground biomass and grain yield, is dependent on plant age as well as the dose of the treatments. This study shows that mechanical stimulation of wheat impacts on a multitude of agriculturally relevant traits and provides a much needed advancement of our understanding of wheat thigmomorphogenesis and the potential applications of mechanical conditioning to control relevant traits.     

Biosynthesis of the xylerythrin-type pigments in Peniophora sanguinea

The hypothesis that biosynthesis of the xylerythrin-type pigments occurs via a pulvinic acid intermediate was confirmed by controlled biological experiments.     

A model combining cell physiology and population genetics to explain Escherichia coli laboratory evolution

Background  

Laboratory experiments under controlled conditions during thousands of generations are useful tools to assess the processes underlying bacterial evolution. As a result of these experiments, the way in which the traits change in time is obtained. Under these conditions, the bacteria E. coli shows a parallel increase in cell volume and fitness.     

Modification of metabolic pattern by variation of nicotinamide adenine dinucleotide phosphate level

The experiments were designed to get some information on the metabolism controlled by variation of the NADP level, which is known to change with the variation of environmental factors.     

The social side of Homo economicus

Many recent experiments in the field of behavioural economics appear to demonstrate a willingness of humans to behave altruistically, even when it is not in their interest to do so. This has led to the assertion that humans have evolved a special predisposition towards altruism. Recent studies have questioned this, and demonstrated that selfless cooperation does not hold up in controlled experiments. As I discuss here, this calls for more economic 'field experiments' and highlights the need for greater integration of the evolutionary and economic sciences.