Area mediated shifts in bird community composition: a study on a fragmented Mediterranean grassland

The effects of habitat fragmentation on birds have often been studied in forest specialist species. Here we aimed at comparing the response of open habitat birds within a range of habitat specialization. The study area was a Mediterranean pseudo-steppe, designated as important for conservation yet fragmented by tree encroachment. We defined bird species dependency on steppe-like habitat by a correspondence analysis, allowing us to distinguish between specialists, generalists and scrubland species. We studied species abundance in relation to fragment area, testing whether species representation in fragments differed from those in continuous habitat. This analysis showed a contrasted response to fragment size between “open habitat” specialist species and generalist ones. Open habitat species were under-represented in the smallest fragments, while generalist were over-represented in small fragments in comparison to their distribution in continuous habitats. We discuss how these results can be linked to species habitat requirements. We find that scrubland species seem to be favoured by encroachment of woody vegetation, as they are able to explore and use the wooded matrix; however specialist species are restricted to open patches and are sensitive to a reduction in patch size. This allows us to predict how different species can exhibit a different sensitivity to habitat fragmentation.     

Thresholds of riparian forest use by terrestrial mammals in a fragmented Amazonian deforestation frontier

Species persistence in fragmented landscapes is intimately related to the quality, structure, and context of remaining habitat remnants. Riparian vegetation is legally protected within private landholdings in Brazil, so we quantitatively assessed occupancy patterns of terrestrial mammals in these remnants, examining under which circumstances different species effectively use them. We selected 38 riparian forest patches and five comparable riparian sites within continuous forest, at which we installed four to five camera-traps per site (199 camera-trap stations). Terrestrial mammal assemblages were sampled for 60 days per station during the dry seasons of 2013 and 2014. We modelled species occupancy and detection probabilities within riparian forest remnants, and examined the effects of patch size, habitat quality, and landscape structure on occupancy probabilities. We then scaled-up modelled occupancies to all 1915 riparian patches throughout the study region to identify which remnants retain the greatest potential to work as habitat for terrestrial vertebrates. Of the ten species for which occupancy was modelled, six responded to forest quality (remnant degradation, cattle intrusion, palm aggregations, and understorey density) or structure (remnant width, isolation, length, and area of the patch from which it originates). Patch suitability was lower considering habitat quality than landscape structure, and virtually all riparian remnants were unsuitable to maintain a high occupancy probability for all species that responded to forest patch quality or structure. Beyond safeguarding legal compliance concerning riparian remnant amount, ensuring terrestrial vertebrate persistence in fragmented landscapes will require curbing the drivers of forest degradation within private landholdings.     

Functional connectivity as an indicator for patch occupancy in grassland specialists

Habitat specialists living in metapopulations are sensitive to habitat fragmentation. In most studies, the effects of fragmentation on such species are analyzed based on Euclidean inter-patch distances. This approach, however, ignores the role of the landscape matrix. Recently, therefore, functional distances that account for the composition of the landscape surrounding the habitat patches have been used more frequently as indicators for patch occupancy. However, the performance of functional and non-functional connectivity measures in predicting patch occupancy of such species has never been compared in a multi-species approach.Here we evaluate the effect of habitat connectivity on the patch occupancy of 13 habitat specialists from three different insect orders (Auchenorrhyncha, Lepidoptera, Orthoptera) in fragmented calcareous grasslands. In order to calculate functional distances we used four different sets of resistance values and rankings. We then modelled species’ occurrence using both Euclidean and functional (based on least-cost modelling) inter-patch distances as predictors.We found that functional connectivity measures provided better results than the non-functional approach. However, a functional connectivity measure that was based on very coarse land-cover data performed even better than connectivity measures that were based on much more detailed land-use data.In order to take into account possible effects of the landscape matrix on patch occupancy by habitat specialists, future metapopulation studies should use functional rather than Euclidean distances whenever possible. For practical applications, we recommend a ‘simple approach’ which requires only coarse land-cover data and in our study performed better than all other functional connectivity measures, even more complex ones.     

Abundance,density and activity of Salvator merianae (Reptilia: Teiidae) and the effect of poaching on the site occupancy by the lizard in an Atlantic Forest Reserve,Brazil

We aimed to estimate the density, occupancy and detectability of Salvator merianae (Tegu) in one of the largest Atlantic rainforest remnants in Espírito Santo, Brazil, the VNR. Species patch occupancy was modelled and used to predict the response direction of six covariates based on prior knowledge of the Tegu's ecology. A priori, we expected that the covariates measured should represent key habitat features for the species (i.e. temperature, forest edge, open habitats) or elements possibly avoided by the species, based on the hypothesis that poaching would have a negative effect on patch occupancy. We used line‐transect surveys to estimate density and abundance. Camera‐traps were used to estimate patch occupancy by the Tegu. Estimated density for S. merianae was 0.21 ± 0.02 Tegus/ha and estimated population size was 4990 ± 521 individuals. Patch occupancy was best described by two covariates: poaching intensity and distance to the forest edge. Detectability was affected by three covariates: poaching intensity, tree density and temperature. Our study presents robust information on abundance and density, habitat use, and activity of S. merianae in the VNR and is the first study providing data on the effects that poaching has on patch occupancy of this lizard. The data indicated that the occupancy and detectability of this species were influenced by a set of factors, providing information that can be useful in management plans in areas where this species can potentially decline and in areas where it may be introduced.     

Large Forest Patches Promote Breeding Success of a Terrestrial Mammal in Urban Landscapes

Despite a marked increase in the focus toward biodiversity conservation in fragmented landscapes, studies that confirm species breeding success are scarce and limited. In this paper, we asked whether local (area of forest patches) and landscape (amount of suitable habitat surrounding of focal patches) factors affect the breeding success of raccoon dogs (Nyctereutes procyonoides) in Tokyo, Central Japan. The breeding success of raccoon dogs is easy to judge as adults travel with pups during the breeding season. We selected 21 forest patches (3.3–797.8 ha) as study sites. In each forest patch, we used infra-red-triggered cameras for a total of 60 camera days per site. We inspected each photo to determine whether it was of an adult or a pup. Although we found adult raccoon dogs in all 21 forest patches, pups were found only in 13 patches. To estimate probability of occurrence and detection for raccoon in 21 forest fragments, we used single season site occupancy models in PRESENCE program. Model selection based on AIC and model averaging showed that the occupancy probability of pups was positively affected by patch area. This result suggests that large forests improve breeding success of raccoon dogs. A major reason for the low habitat value of small, isolated patches may be the low availability of food sources and the high risk of being killed on the roads in such areas. Understanding the effects of local and landscape parameters on species breeding success may help us to devise and implement effective long-term conservation and management plans.     

Secondary forest buffers the effects of fragmentation on aerial insectivorous bat species following 30 years of passive forest restoration

Passive forest restoration can buffer the effects of habitat loss on biodiversity. We acoustically surveyed aerial insectivorous bats in a whole-ecosystem fragmentation experiment in the Brazilian Amazon over a 2-year period, across 33 sites, comprising continuous old-growth forest, remnant fragments, and regenerating secondary forest matrix. We analyzed the activity of 10 species/sonotypes to investigate occupancy across habitat types and responses to fragment size and interior-edge-matrix (IEM) disturbance gradients. Employing a multiscale approach, we investigated guild (edge foragers, forest specialists, flexible forest foragers, and open space specialists) and species-level responses to vegetation structure and forest cover, edge, and patch density across six spatial scales (0.5–3 km). We found species-specific habitat occupancy patterns and nuanced responses to fragment size and the IEM disturbance gradient. For example, Furipterus horrens had lower activity in secondary forest sites and the interior and edge of the smallest fragments (1 and 10 ha) compared to continuous forest, and only two species (Pteronotus spp.) showed no habitat preference and no significant responses across the IEM and fragment size gradients. Only the Molossus sonotype responded negatively to vegetation structure. We uncovered no negative influence of forest cover or edge density at guild or species-level. Our results indicate that reforestation can buffer the negative effects of fragmentation and although these effects can still be detected in some species, generally aerial insectivorous bats appear to be in recovery after 30 years of passive forest restoration. Our findings reinforce the need to protect regenerating forests while conserving vast expanses of old-growth forest.     

Temporal patch occupancy dynamics of the Siberian flying squirrel in a boreal forest landscape

Ability to predict species distribution in a landscape is of crucial importance for natural resource management and species conservation. Therefore, the understanding of species habitat requirements and spatio-temporal dynamics in occurrence is needed. We examined patch occupancy patterns of the Siberian flying squirrel Pteromys volans in northern Finland across a seven year study period. Forest patches dominated by mature spruce ( Picea abies ) in a study area (375 km²) were surveyed to monitor the presence or absence of the flying squirrel. The patch occupancy pattern was dynamic: about half of the habitat patches were occupied at least once during the study period and more patches were colonised than were abandoned. Patches that were continuously occupied (i.e. occupied during all sample periods) were typically of high quality (based on habitat and landscape characteristics), continuously unoccupied patches were usually of low quality, and intermediate quality patches were occupied intermittently. The variables explaining patch occupancy were similar each year, and a statistical model based on data from the year 2000 also predicted occupancy in 2004 with similar accuracy. However, data from a single survey were inadequate for identifying patches used intermittently by flying squirrels. Despite inconsistent occupancy, these patches may be important for the local persistence of flying squirrels. The dynamic occupancy pattern may thus affect estimates of suitable habitat area and identification of functional patch networks for landscape planning. These results emphasise the need for follow-up studies to better understand population patterns and processes in time.     

Distinguishing habitat types and the relative influences of environmental factors on patch occupancy for a butterfly metapopulation

The goals of this study were to examine whether subjective habitat types may be segregated based on environmental variables and whether the relative influences of environmental factors on patch occupancy differ among habitat types. We examined these questions using a metapopulation of the butterfly Speyeria nokomis carsonensis, surveying sites for environmental characteristics and butterfly presence/absence over a 2-year period. Discriminant function analyses correctly classified 84% of sites within habitat types based on environmental variables that explained 82 and 67% of the variance along two ordination axes. Occupancy models for each habitat type demonstrated that the relative influences of environmental factors differed among habitat types. This study broadens the current paradigm of metapopulation dynamics by demonstrating that systems exist in which distinct habitat types can be delineated and differential suites of environmental factors explain occupancy according to habitat type. These findings demonstrate that even for highly specialized species, all habitat areas cannot be assumed to contribute equally to occupancy status, and thus have comparable conservation value. Designing land-use plans and policies based, in part, on careful habitat assessments can have important implications for the conservation of species existing in patchy landscapes, and can help guide reserve design, management actions, and allocation of resources on multiple-use landscapes.     

An improved multi-scale approach to modeling habitat occupancy of northern bobwhite

Predicting species presence requires knowledge of detection of individuals, scale of model variables, model selection uncertainty, and spatial autocorrelation. Our objective was to incorporate recent modeling advances to predict potential habitat occupancy of northern bobwhite (Colinus virginianus). From 15 May–15 August 2008 and 2009, we conducted repeat-visit surveys at 360 sites within Delaware to sample presence of bobwhite. We randomly selected half the data to model scale-dependent relationships of bobwhite presence with metrics of landscape- and site-scale habitat composition and configuration. The final averaged habitat-occupancy model fit the remainder testing dataset with an area under the receiver operating characteristic curve value of 0.62. At the site scale, bobwhite presence was negatively related to interspersion and juxtaposition of early successional habitat (ESH; grassland and shrubland), ESH to forest edge density, and agriculture to forest edge density, though relative effect sizes were weak to moderate after accounting for model selection uncertainty. At the landscape scale, bobwhite presence was negatively related to patch cohesion of human development within 2.5 km and positively related to patch cohesion of ESH within 2.0 km, with both variables exerting strong effects. Bobwhite presence was also weakly and positively related to percentage of shrubland habitat within 1.0 km of the sampling point. We applied our habitat occupancy model to map the predicted presence of breeding bobwhite within the Delmarva Peninsula, USA. The modeling results and distribution map will provide guidance to State and Federal private land management programs in the Mid-Atlantic to identify where habitat management efforts will be most effective. Our methodology can also serve as a basis for future habitat modeling of bobwhite and other grassland–shrubland species across their range. © 2011 The Wildlife Society.     

Fragmentation in eucalypt woodlands promotes nest‐tree occupancy by a despotic species,the noisy miner (Manorina melanocephala)

The effects of habitat fragmentation as a threat to biodiversity are well known; decreased connectivity can potentially influence population processes and dynamics, resulting in smaller, isolated populations that may not function optimally. However, fragmentation may also increase the amount of edge or ecotone habitat available to open country species, benefiting their populations and enabling them to dominate remnant habitats. Noisy miners (Manorina melanocephala) are one such species, occupying eastern‐Australian eucalypt woodlands. They are considered a ‘despotic’ species, in that their presence negatively impacts woodland avifauna biodiversity due to their aggressive exclusion of other taxa from occupied areas. Despite this well‐known impact, little information exists on the patterns of nest‐tree occupancy by noisy miners within eucalypt woodlands. In the current study, we explored the patterns of nest‐tree occupancy by noisy miners across two successive years, aiming to identify preferences for breeding areas relative to vegetation structure. Our results show that both habitat fragmentation and the characteristics of individual eucalypt trees in an area influenced nest‐tree occupancy. Noisy miners constructed nests in trees near the edge of woodland patches more often than expected. Moreover, the nest tree chosen was a eucalypt that was significantly smaller than randomly selected trees from the surrounding area. The results highlight the importance of habitat management measures that may reduce the suitability of woodland patches as nesting sites for this species, in order to mitigate the severe effects of this despotic edge specialist.     

Distributions of habitat suitability and the abundance-occupancy relationship

Positive abundance-occupancy relationships (a relationship between the number of sites a species occupies and the average density of individuals in occupied sites) are widespread through a range of taxa. The simplest model for this is the "vital rates" model, which proposes that habitat suitability varies spatially; increasing average habitat quality thus leads to simultaneous increases in average densities within occupied areas, as well as the total area that is habitable. This model has not been tested. We develop a general analytical version of this model and show that it predicts that the skewness of population size or aggregation of individuals within sites should vary systematically with density and occupancy, depending on the distribution of habitat suitability, and that the variance in occupancy should be highest at low densities. We compare these predictions with data from the British Trust for Ornithology's Common Birds Census, and we find systematic changes in both variance and skewness of density, both intra- and interspecifically.     

The relationship between nested subsets,habitat subdivision,and species diversity

Biotic assemblages are said to be nested when the species making up relatively species-poor biotas comprise subsets of the species present at richer sites. Because species number and site area are often correlated, previous studies have suggested that nestedness may be relevant to questions of how habitat subdivision affects species diversity, particularly with respect to the question of whether a single large, contiguous patch of habitat will generally contain more species than collections of smaller patches having the same total combined area. However, inferences from analyses of nestedness are complicated by (1) variability in degrees of nestedness measured in natural communities, (2) variability in species-area relationships, and (3) the fact that nestedness statistics do not account for the size of habitat patches, only in the degree of overlap among sites with different numbers of species. By comparing various indices of nestedness with a saturation index that more directly measures the effect of habitat subdivision, it is shown that the first two of these factors are not as important as the third. Whether a single large site or several smaller ones having the same total combined area maximizes species diversity is dependent on (1) overlap in species composition among sites and (2) the number of species per unit area in the different sites. Because nestedness indices do not account for species number at a site, they cannot accurately predict how habitat subdivision affects species diversity patterns. Still, nestedness analyses are important in that they indicate the degree to which rare species tend to be found in the largest, or the most species-rich, sites, patterns not revealed by the saturation index. Both types of analysis are important in order to obtain a more complete picture of how species richness and compositional patterns are influenced by habitat subdivision.     

Response of a raptor community to shrinking area and degradation of tropical rain forest in the south western Ghâts (India)

The influence of irregular or incomplete fragmentation and increasing degradation of natural rain forest on diurnal raptor community was studied in the northern part of the western Ghâts in southwestern India A census of mainly territorial breeding pairs on 400 ha sample quadrats was associated with a measure of the percent cover of the main habitat types and a degree of forest fragmentation including irregular patch shape and habitat heterogeneity
Four groups of 3-4 species were defined according to their decreasing tolerance to forest fragmentation and disturbance, from mostly open grassland species to interior forest specialists Habitat selection, density and sensitivity to landscape structure were investigated The community composition and dynamic of each habitat were the sum of these specific reactions The distribution of species along the succession of increasing fragmentation and forest degradation was thus found to be non random, but did not follow a nested subset pattern The density of forest species declined with forest patch size possibly because of the irregular patch shape, the increased edge effects and the consequent increase of linear distance for a bird to cover within its territory However, sensitivity to habitat structure and disturbance was found to be even higher than sensitivity to area per se The need to conserve the largest patches of little disturbed forest is emphasized, as well as the conservation value of woodlots-open habitat mosaics that are suitable for a different set of species     

Observational evidence that maladaptive gene flow reduces patch occupancy in a wild insect metapopulation

Theory predicts that dispersal throughout metapopulations has a variety of consequences for the abundance and distribution of species. Immigration is predicted to increase abundance and habitat patch occupancy, but gene flow can have both positive and negative demographic consequences. Here, we address the eco‐evolutionary effects of dispersal in a wild metapopulation of the stick insect Timema cristinae, which exhibits variable degrees of local adaptation throughout a heterogeneous habitat patch network of two host‐plant species. To disentangle the ecological and evolutionary contributions of dispersal to habitat patch occupancy and abundance, we contrasted the effects of connectivity to populations inhabiting conspecific host plants and those inhabiting the alternate host plant. Both types of connectivity should increase patch occupancy and abundance through increased immigration and sharing of beneficial alleles through gene flow. However, connectivity to populations inhabiting the alternate host‐plant species may uniquely cause maladaptive gene flow that counters the positive demographic effects of immigration. Supporting these predictions, we find the relationship between patch occupancy and alternate‐host connectivity to be significantly smaller in slope than the relationship between patch occupancy and conspecific‐host connectivity. Our findings illustrate the ecological and evolutionary roles of dispersal in driving the distribution and abundance of species.     

Patch occupancy of North American mammals: is patchiness in the eye of the beholder?

Aim Intraspecific variation in patch occupancy often is related to physical features of a landscape, such as the amount and distribution of habitat. However, communities occupying patchy environments typically exhibit non‐random distributions in which local assemblages of species‐poor patches are nested subsets of assemblages occupying more species‐rich patches. Nestedness of local communities implies interspecific differences in sensitivity to patchiness. Several hypotheses have been proposed to explain interspecific variation in responses to patchiness within a community, including differences in (1) colonization ability, (2) extinction proneness, (3) tolerance to disturbance, (4) sociality and (5) level of adaptation to prevailing environmental conditions. We used data on North American mammals to compare the performance of these ‘ecological’ hypotheses and the ‘physical landscape’ hypothesis. We then compared the best of these models against models that scaled landscape structure to ecologically relevant attributes of individual species. Location North America. Methods We analysed data on prevalence (i.e. proportion of patches occupied in a network of patches) and occupancy for 137 species of non‐volant mammals and twenty networks consisting of four to seventy‐five patches. Insular and terrestrial networks exhibited significantly different mean levels of prevalence and occupancy and thus were analysed separately. Indicator variables at ordinal and family levels were included in models to correct for effects caused by phylogeny. Akaike's information criterion was used in conjunction with ordinary least squares and logistic regression to compare hypotheses. Results A patch network's physical structure, indexed using patch area and isolation, received the greatest support among models predicting the prevalence of species on insular networks. Niche breadth (diet and habitat) received the greatest support for predicting prevalence of species occupying terrestrial networks. For both insular and terrestrial systems, physical features (patch area and isolation) received greater support than any of the ecological hypotheses for predicting species occupancy of individual patches. For terrestrial systems, scaling patch area by its suitability to a focal species and by individual area requirements of the species, and scaling patch isolation by species‐specific dispersal ability and niche breadth, resulted in models of patch occupancy that were superior to models relying solely on physical landscape features. For all selected models, unexplained levels of variation were high. Main conclusions Stochasticity dominated the systems we studied, indicating that random events are probably quite important in shaping local communities. With respect to deterministic factors, our results suggest that forces affecting species prevalence and occupancy may differ between insular and terrestrial systems. Physical features of insular systems appeared to swamp ecological differences among species in determining prevalence and occupancy, whereas species with broad niches were disproportionately represented in terrestrial networks. We hypothesize that differential extinction over long time periods in highly variable networks has driven nestedness of mammalian communities on islands, whereas differential colonization over shorter time‐scales in more homogeneous networks probably governed the local structure of terrestrial communities. Our results also demonstrate that integration of a species' ecological traits with physical features of a patch network is superior to reliance on either factor separately when attempting to predict the species' probability of patch occupancy in terrestrial systems.     

Quantitative predictions for patch occupancy of capercaillie in fragmented habitats

A major conclusion of studying metapopulation biology is that species conservation should favor regional rather than local population persistence. Regional persistence is tightly linked to size, spatial configuration and quality of habitat patches. Hence it is important for the management of endangered species that priority patches can be identified. We developed a predictive model of patch occupancy by capercaillie, a threatened grouse species, based on a single snapshot of data. We used logistic regression to predict patch occupancy as a function of patch size, isolation, connectivity, relative altitude, and biogeographical area. The probability of a patch being occupied increased with patch size and increasing altitude, and decreased with increasing distance to the next occupied patch. Patch size was the most important predictor although occupied patches varied considerably in size. Our model only uses data on the number, size and spatial configuration of habitat patches. It is a useful tool to designate priority areas for conservation, i.e. large core patches with high resilience in habitat quality, smaller island‐patches that still have high probability of being inhabited or becoming recolonised, and patches functioning as “stepping stones”. If capercaillie is to be preserved, habitat suitability needs to be maintained in a functional network of patches that account for size and inter‐patch distance thresholds as found in this study. We suggest that similar area‐isolation relationships are valid for almost any region within the distribution range of capercaillie. The thresholds for occupancy are however likely to depend on characteristics of the respective landscape. The outcome of our study emphasises the need for future investigations that explore the relationship between patch occupancy, matrix quality and its resistance to dispersing individuals.     

Estimating breeding season abundance of golden-cheeked warblers in Texas,USA

Population abundance estimates using predictive models are important for describing habitat use and responses to population-level impacts, evaluating conservation status of a species, and for establishing monitoring programs. The golden-cheeked warbler (Setophaga chrysoparia) is a neotropical migratory bird that was listed as federally endangered in 1990 because of threats related to loss and fragmentation of its woodland habitat. Since listing, abundance estimates for the species have mainly relied on localized population studies on public lands and qualitative-based methods. Our goal was to estimate breeding population size of male warblers using a predictive model based on metrics for patches of woodland habitat throughout the species' breeding range. We first conducted occupancy surveys to determine range-wide distribution. We then conducted standard point-count surveys on a subset of the initial sampling locations to estimate density of males. Mean observed patch-specific density was 0.23 males/ha (95% CI = 0.197–0.252, n = 301). We modeled the relationship between patch-specific density of males and woodland patch characteristics (size and landscape composition) and predicted patch occupancy. The probability of patch occupancy, derived from a model that used patch size and landscape composition as predictor variables while addressing effects of spatial relatedness, best predicted patch-specific density. We predicted patch-specific densities as a function of occupancy probability and estimated abundance of male warblers across 63,616 woodland patches accounting for 1.678 million ha of potential warbler habitat. Using a Monte Carlo simulation, our approach yielded a range-wide male warbler population estimate of 263,339 (95% CI: 223,927–302,620). Our results provide the first abundance estimate using habitat and count data from a sampling design focused on range-wide inference. Managers can use the resulting model as a tool to support conservation planning and guide recovery efforts. © 2012 The Wildlife Society.     

An historical interpretation of habitat use by frogs in a Central Amazonian Forest

Interpretations of habitat use in tropical frog assemblages have centred on resource partitioning and stressed the influence of interspecific interaction and climatic fluctuation on numbers of species using various habitats. We used audio strip transects and visual methods to determine the species composition, reproductive modes, and habitat occupancy patterns of the entire assemblage of frog species in 1900 hectares of primary forest north of Manaus in the central Amazon. We then compared taxon, reproductive mode, and habitat of species at six analogous lowland forest sites of similar species richness (five in the Amazon and one in Southeast Asia) to determine similarity of habitat use among sites and whether habitat is strongly associated with species» systematic positions. In all lowland Amazonian faunas, most species with aquatic development use pools, many species undergo some degree of terrestrial development, and few species are riparian or develop in streams. In contrast, about half the species in Southeast Asian assemblages are riparian and develop in streams, and few species develop terrestrially. Because reproductive mode and habitat associate strongly with taxon, patterns of habitat use observed at this regional scale are better explained by historical biogeography and differential rates of speciation than by proximal selection generated by contemporary environmental conditions. This study presents an inventory of frog species in a central Amazonian terre-firme forest and measurements of habitat availability and use by an entire assemblage of frogs throughout a large area (other portions of this study were published by Gascon, 1990, 1991; Zimmerman & Rodrigues, 1990; Zimmerman, 1991). We asked whether this local pattern of habitat occupancy differed from the regional Amazonian pattern and whether local species composition could be predicted from (sub)habitat composition. Viewing the assemblage at the local level did reveal species-(sub)habitat relationships masked at the broader regional level. About half the pool-breeders at the Manaus forest study sites would not use pools that could be flooded by a permanent stream; several species distinguished between permanent and temporary ponds; and some species occupied all available breeding habitat, whereas others occurred patchily. This pattern was maintained over four breeding seasons, and species composition could be predicted from (sub)habitat composition. Phylogeny was not a predictor of subhabitat occupancy. Perhaps species are phylogenetically constrained to develop in pool, stream, riparian, or terrestrial habitats, but contemporary selection governs their narrow distribution within these major habitat types. Finally, we asked whether anuran species richness in the central Amazon differs from that of the upper or lower Amazon. One genus, Eleutherodactylus , accounts for elevated species richness at upper Amazonian sites. Dry seasons in the central and lower Amazon are unlikely to restrict the spread of eleutherodactylines, which reproduce terrestrially. There are as many non-eleutherodactylines with terrestrial development at seasonal sites as there are at continually wet sites. Colonization history and the topography of central and lower Amazonia are more likely to limit eleutherodactyline richness.     

Habitat quality and population density drive occupancy dynamics of snowshoe hare in variegated landscapes

The influence of habitat quality and population density on occupancy dynamics may surpass that of traditional metrics of area and isolation, but often this is not considered explicitly in studies of spatially structured populations. In landscapes that are not easily characterized as binary habitat/non‐habitat (e.g. variegated landscapes), this influence may be even more important and occur at both local and landscape levels. It follows that occupancy dynamics may be driven by disparate processes depending on how extinction or colonization relate to habitat quality and population density. We examined the relative influence of area, structural isolation, habitat quality, local population density, and neighborhood population density (i.e. population density in the landscape around a site) on the probability of extinction and colonization of snowshoe hare Lepus americanus across an expansive forest mosaic landscape (encompassing the northern third of Idaho). Habitat quality and population density were highly influential in determining extinction and colonization, whereas patch area and isolation were much less important. Sites with heavier vegetative cover at the site or landscape‐level were more likely to be colonized and less likely to go extinct, and sites with greater local population density in the previous time step had lower probability of extinction. Sites embedded in high density neighborhoods also were less likely to go extinct, but not more likely to be colonized. We found a significant interaction between local and neighborhood population density on extinction in 1 yr, suggesting that the strength of demographic rescue may vary dependent on local site densities. Our results add to a growing literature showing that factors outside of structural metrics of area and isolation are important drivers of occupancy dynamics. Given the multi‐scaled influence of habitat quality and population density on occupancy dynamics, our work also indicates that research on snowshoe hare must extend beyond simply assessing local factors to understand the spatial dynamics of populations.     

Chainsawing for conservation: Ecologically informed tree removal for habitat management

Summary In many ecosystems, increases in vegetation density and the resulting closure of forest canopies are threatening the viability of species that depend upon open, sunlight‐exposed habitats. Consequently, we need to develop management strategies that recreate open habitats while minimizing the impacts on non‐target areas. Selective logging creates canopy gaps, but may result in undesirable effects in other respects. Thus, chainsaws have not been a popular tool for conservation. We conducted a landscape‐scale experiment to test whether selective tree removal can restore patch‐level habitat quality for Australia’s most endangered snake (Hoplocephalus bungaroides) and its main prey (the lizard Oedura lesueurii). We selectively removed canopy trees surrounding 25 overgrown rock outcrops and compared the resultant habitat structure and abiotic conditions to 30 overgrown, shady outcrops and 20 open, sunny outcrops. Removing vegetation decreased canopy cover by 19% in experimental plots and increased incident radiation and thermal regimes. These changes increased the availability of suitable shelter sites for our target species by 131%. At the landscape scale, our manipulations had a trivial effect on forest habitat; by increasing the area of sun‐exposed outcrops, we decreased forest cover by <0.1%. Our results show that targeted canopy removal can increase the availability of sun‐exposed habitat patches for endangered species in biologically meaningful ways. Thus, selective tree felling may be an effective conservation tool for open‐habitat specialists threatened by vegetation overgrowth.