Monitoring large herbivore diversity at different scales: comparing direct and indirect methods

Monitoring of large herbivores is central to research and management activities in many protected areas. Monitoring programs were originally developed to estimate (trends in) population sizes of individual species. However, emphasis is shifting increasingly towards conservation of diversity and communities instead of individual species, as a growing literature shows the importance of herbivore diversity for ecosystem functioning. We argue that the design of monitoring programs has not yet been adapted well to this new conservation paradigm. Using large herbivore census data from Hluhluwe-iMfolozi Park, South Africa, we studied how monitoring methodology (observational counts vs. dung counts) and spatial scale interact in influencing estimates of large herbivore species richness and diversity. Dung counts resulted in higher herbivore species richness and diversity estimates than direct observational counts, especially at finer monitoring resolutions (grid cells smaller than 25 km²). At monitoring resolutions coarser than 25 km² both methods gave comparable diversity estimates. The methods also yielded different spatial diversity estimates, especially at finer resolutions. Grid cells with high diversity according to the dung count data did not necessarily have high diversity according to the observational counts, as shown by low correlation of grid cell values of both methods. We discuss these results in the light of estimates of the sampling effort of each method and, hence, suggest new monitoring designs that are more suitable for tracking temporal and spatial trends in large herbivore diversity and community composition.     

Inferring species abundance distribution across spatial scales

A long-standing problem in ecology is to understand how the species–abundance distribution (SAD) varies with sampling scale. The problem was first characterized by Preston as the veil line problem. Although theoretical and empirical studies have now shown the nonexistence of the veil line, this problem has generated much interest in scaling biodiversity patterns. However, research on scaling SAD has so far exclusively focused on the relationship between the SAD in a smaller sampling area and a known SAD assumed for a larger area. An unsolved challenge is how one may predict species–abundance distribution in a large area from that of a smaller area. Although upscaling biodiversity patterns (e.g. species–area curve) is a major focus of macroecological research, upscaling of SAD across scale is, with few exceptions, ignored in the literature. Methods that directly predict SAD in a larger area from that of a smaller area have just started being developed. Here we propose a Bayesian method that directly answers this question. Examples using empirical data from tropical forests of Malaysia and Panama are employed to demonstrate the use of the method and to examine its performance with increasing sampling area. The results indicate that only 10-15% of the total census area is needed to adequately predict species abundance distribution of a region. In addition to species abundance distributions, the method also predicts well the regional species richness.     

Plant traits respond to the competitive neighbourhood at different spatial and temporal scales

Background and Aims Clonal plants can plastically modify their traits in response to competition, but little is known regarding the spatio-temporal scale at which a competitive neighbourhood determines the variability in species traits. This study tests the hypothesis that the local neighbourhood can be expected to influence the processes that are involved in competition tolerance and avoidance, and that this effect depends on organ lifespan.Methods Fragments of the rhizomatous Elytrigia repens (Poaceae) were sampled in 2012 in experimental plant communities that varied in species identity and abundance. These communities had been cultivated since 2009 in mesocosms in a common garden. Fragment performance, shoot and clonal traits were measured, and the effects of past and present local neighbourhoods of five different radius sizes (5–25 cm) were examined. Past and present local neighbourhood compositions were assessed in 2011 and 2012, respectively.Key Results Most of the measured traits of E. repens responded to the local neighbourhood (5–10 cm radius), with an additional effect of the larger neighbourhood (20–25 cm radius) on ramet height, leaf dry matter content, maximal internode length and specific rhizome mass. Contrary to the expectation of the hypothesis, the temporal influence was not due to the organ lifespan. Indeed, five of the eight traits studied responded to both the past and present neighbourhoods. With the exception of specific rhizome mass, all trait responses were explained by the abundance of specific species.Conclusions This study demonstrates that the traits of a single clonal individual can respond to different competitive environments in space and time. The results thus contribute to the understanding of competition mechanisms.     

Surveying carnivores at large spatial scales: a comparison of four broad-applied methods

Reliable methods to estimate species richness are very important to managers and conservationists because they provide key data to make the right decisions in conservation programmes. In the case of carnivore mammals, traditional methods, such as direct count censuses, are not useful since these animals are usually scarce, elusive and nocturnal. Difficulties in carnivore sampling are compounded when monitoring programmes are developed at large spatial scales, where high economic costs and field efforts are necessary to achieve reliable richness or abundance estimates. These problems have highlighted the need to find more effective carnivore survey methods, especially in regions with high rates of landscape change, such as the Mediterranean basin. The present study, performed in a typical Mediterranean area, was the first in Europe to test simultaneously the relative efficiencies of four broad-applied sampling methods to detect carnivore species at large spatial scales. Sign surveys based on scat detection, scent stations, camera-trapping and live-trapping were investigated. We compared efficiencies using biological parameters and by considering both the logistic and economic costs of each method. Overall, scent stations and sign surveys were the most efficient methods both in economic and logistic terms. In addition, the use of scent stations may be necessary to detect species rarely detected by scats. Detailed and extensive training programmes for conducting sign surveys and scent stations may overcome perceived problems thus enhancing the widespread use of both methods. Our results are applicable not only to other Mediterranean areas, but also to other habitats and regions of the world. More research into the suitability of these and other methods in relation to different landscapes, seasons and species is required.     

Disturbance and diversity at two spatial scales

The spatial scale of disturbance is a factor potentially influencing the relationship between disturbance and diversity. There has been discussion on whether disturbances that affect local communities and create a mosaic of patches in different successional stages have the same effect on diversity as regional disturbances that affect the whole landscape. In a microcosm experiment with metacommunities of aquatic protists, we compared the effect of local and regional disturbances on the disturbance–diversity relationship. Local disturbances destroyed entire local communities of the metacommunity and required reimmigration from neighboring communities, while regional disturbances affected the whole metacommunity but left part of each local community intact. Both disturbance types led to a negative relationship between disturbance intensity and Shannon diversity. With strong local disturbance, this decrease in diversity was due to species loss, while strong regional disturbance had no effect on species richness but reduced the evenness of the community. Growth rate appeared to be the most important trait for survival after strong local disturbance and dominance after strong regional disturbance. The pattern of the disturbance–diversity relationship was similar for both local and regional diversity. Although local disturbances at least temporally increased beta diversity by creating a mosaic of differently disturbed patches, this high dissimilarity did not result in regional diversity being increased relative to local diversity. The disturbance–diversity relationship was negative for both scales of diversity. The flat competitive hierarchy and absence of a trade-off between competition and colonization ability are a likely explanation for this pattern.     

Environmental drivers of nematode abundance and genus composition at two spatial scales on an estuarine intertidal flat

Hydrobiologia - The dwarf morph of Telmatochromis temporalis uses empty snail shells as shelters and spawning sites. This morph varies in body colour from pale to dark within populations. Pale...     

Dung beetle movements at two spatial scales

To understand the dynamics of spatially structured populations, we need to know the level of movements at different spatial scales. This paper reports on Aphodius dung beetle movements at two scales: movements between dung pats within pastures, and movements between pastures. First, I test an assumption common to many recent models of spatially structured populations – that the probability of an individual moving between habitat patches decreases exponentially with distance. For dung beetles, I find sufficient evidence to reject this assumption. The distribution of dispersal distances was clearly leptokurtic, with more individuals moving short and long distances than expected on the basis of an exponential function. In contrast, the data were well described by a power function. I conclude that dung beetle movements include an element of non-randomness not captured by the simplistic exponential model. The power function offers a promising alternative, but the actual mechanisms behind the pattern need to be clarified. Second, I compare several species of Aphodius to each other. Although these species occur in the same network of habitat patches, their movement patterns are different enough to result in a mixture of different spatial population structures. Movements between pastures were more frequent the larger the species, the more specific its occurrence in relation to pat age, and the more specialized it is on cow dung and open pasture habitats. Within pastures, all species form patchy populations, with much movement among individual pats.     

Estimating acridid densities in grassland habitats: a comparison between presence-absence and abundance sampling designs

Sampling methods to estimate acridid density per surface area unit in grassland habitats were compared using presence-absence data and count data. Sampling plans based on 6 yr of surveys were devised to estimate the density of Chorthippus spp., Euchorthippus spp., and Calliptamus italicus L. These acridids represented >90% of species in the study area. Sampling plans based on count data provided a reasonable tool when densities were >1/m(2) and when the level of precision was 0.20-0.30. A binomial sampling plan can be used to estimate C. italicus density with a level of precision >or=0.28. Sampling characteristics, i.e., estimated mean, actual precision, and sample size, were established on validation data sets with bootstrapping analysis. Sampling costs were also calculated according to density-dependent functions. Comparison between binomial sampling and enumerative sampling of C. italicus showed that binomial sampling required less time than enumerative sampling when densities were 0.35. Plot area had no significant effect on sample variances of counts.     

Primary productivity and species richness: relationships among functional guilds, residency groups and vagility classes at multiple spatial scales

One of the major determinants of species richness is the amount of energy available, often measured as primary productivity. Heterogeneity of environmental variables has also been found to influence species richness. Predicting species distributions across landscapes and identifying areas that have high species richness, or vulnerable groups of species, is useful for land management. Remotely sensed data may help identify such areas, with the Normalized Difference Vegetation Index (NDVI) providing an estimate of primary productivity. We examined the relationship between maximum productivity (NDVI), heterogeneity of productivity, and species richness of birds and butterflies at multiple spatial scales. We also explored relationships between productivity, functional guilds and residency groups of birds, and vagility classes of butterflies. Positive linear relationships between maximum NDVI and number of functional guilds of birds were found at two spatial scales. We also found positive linear relationships between maximum NDVI and species richness of neotropical migrant birds at two scales. Heterogeneity of NDVI, by contrast, was negatively associated with number of functional guilds of birds and species richness of resident birds. Maximum NDVI was associated with species richness of all butterflies and of the most vagile butterflies. No association was found between heterogeneity of NDVI and species richness of butterflies. In the Great Basin, where high greenness and availability of water correspond to areas of high species richness and maximum NDVI, our results suggest that NDVI can provide a reliable basis for stratifying surveys of biodiversity, by highlighting areas of potentially high biodiversity across large areas. Measures of heterogeneity of NDVI appear to be less useful in explaining species richness.     

Marine macrophysiology: studying physiological variation across large spatial scales in marine systems

A new approach toward understanding marine ecosystems has emerged through the integration of ecological physiology and macroecology. This multidisciplinary approach, titled here marine macrophysiology, facilitates unique insight into the foundation of macro-scale ecological patterns, such as biogeographic distributions, via examination of functional attributes of marine organisms across large spatial scales. For example, these broad-scale physiological inquiries confer the ability to directly assess the abundant-center hypothesis (aka Brown's principle) which proposes that species have decreased performance toward their range edges. By extension, the marine macrophysiological perspective also stands to clarify our understanding of more complex macro-scale phenomena such as biological invasions, the design of marine protected areas, and species' responses to global climate change. In this article, we review recent marine macrophysiology research and offer insights into future directions for this emerging field.     

Competition intensity at local versus regional spatial scales

Studies of competition intensity over natural (i.e. topographic) gradients often contradict the results from studies where artificial (i.e. fertilizer) gradients have been used. Why should the type of gradient matter? To explore the possibilities, we performed experiments to measure competition intensity experienced by tree seedlings from grass competitors across a natural resource gradient, and simultaneously across artificial soil nutrient (fertiliser) gradients. We measured various functional traits (i.e. specific leaf area, leaf area, leaf nitrogen content, δ¹⁵N, δ¹³C, RGR) to gain mechanistic insight into the nature of competition across these gradients. Competition intensity increased with increasing resource availability, unequivocally at the local scale (i.e. with fertilizer application) but not at the regional scale (i.e. across the natural productivity gradient). Our measurements of plant traits were generally consistent with measurements of competition intensity, and demonstrate that competition occurs even when resource levels are low. Competition mainly acted to reduce the growth of Eucalyptus seedlings. Functional (physiological) traits in the Eucalyptus seedlings were not strongly affected by competitors, with the possible exception of δ¹⁵N, which may effectively integrate information on soil nutrient, moisture and leaf processes.     

Modeling changes in predator functional response to prey across spatial scales

Extrapolation of predator functional responses from laboratory observations to the field is often necessary to predict predation rates and predator-prey dynamics at spatial and temporal scales that are difficult to observe directly. We use a spatially explicit individual-based model to explore mechanisms behind changes in functional responses when the scale of observation is increased. Model parameters were estimated from a predator-prey system consisting of the predator Delphastus catalinae (Coleoptera: Coccinellidae) and Bemisia tabaci biotype B (Hemiptera: Aleyrodidae) on tomato plants. The model explicitly incorporates prey and predator distributions within single plants, the search behavior of predators within plants, and the functional response to prey at the smallest scale of interaction (within leaflets) observed in the laboratory. Validation revealed that the model is useful in scaling up from laboratory observations to predation in whole tomato plants of varying sizes. Comparing predicted predation at the leaflet scale, as observed in laboratory experiments, with predicted predation on whole plants revealed that the predator functional response switches from type II within leaflets to type III within whole plants. We found that the magnitude of predation rates and the type of functional response at the whole plant scale are modulated by (1) the degree of alignment between predator and prey distributions and (2) predator foraging behavior, particularly the effect of area-concentrated search within plants when prey population density is relatively low. The experimental and modeling techniques we present could be applied to other systems in which active predators prey upon sessile or slow-moving species.     

Linking local ecological knowledge and habitat modelling to predict absolute species abundance on large scales

Assessing the spatial structure of abundance of a species is a basic requirement to carry out adequate conservation strategies. However, existing attempts to predict species abundance, particularly in absolute units and on large scales, are scarce and have led to weak results. In this work we present a scheme to obtain, in an affordable way, a predictive model of absolute animal abundance on large scales based on the modelling of data obtained from local ecological knowledge (LEK) and its calibration. To exemplify this scheme, we build and validate a predictive absolute abundance model of the endangered terrestrial tortoise Testudo graeca in Southeast Iberian Peninsula. For that purpose, we collected distribution and relative abundance data of T. graeca using a low cost methodology, such as LEK, by means of interviewing shepherds. The information from LEK was employed to build a predictive habitat-based model of relative abundance. The relative abundance model was transformed into an absolute abundance model by means of calibration with a classical absolute abundance sampling method such as distance sampling. The obtained absolute abundance model predicted the observed absolute abundances values well in independent locations when compared with other works (R ² = 36%) and thus can offer a cost-effective predictive ability. Our results show that reliable habitat-based predictive maps of absolute species abundance on regional scales can be obtained starting from low cost sampling methods of relative abundance, such as LEK, and its calibration.     

Nest distribution shaping within-stream variation in Atlantic salmon juvenile abundance and competition over small spatial scales

1. Spatial heterogeneity in population density is predicted to have important effects on population characteristics, such as competition intensity and carrying capacity. Patchy breeding distributions will tend to increase spatial heterogeneity in population density, whereas dispersal from breeding patches will tend to decrease it. The potential for dispersal to homogenize densities is likely to differ both among organisms (e.g. plants vs. mobile animals) and throughout ontogeny (e.g. larvae vs. adults). However, for mobile organisms, experimental studies of the importance of breeding distributions from the wild are largely lacking. 2. In the present study, experimental manipulations replicated over eight natural streams and 2 years enabled us to test for effects of the distribution of Atlantic salmon eggs over spatial scales which are relevant to local interactions among individuals. Artificial nests were placed along 250 m study reaches at one of two levels of nest dispersion - patchy (two nests per stream) and dispersed (10 nests per stream) - while holding total egg density (eggs m(-2) stream area) constant. 3. Nest dispersion had significant effects on the spatial distribution of the resulting juveniles in their first summer. Patchy nest distributions resulted in a highly right-skewed frequency distribution of local under-yearling densities (among 25 m sampling sections), as sample sections adjacent to the nest sites had relatively high densities. In contrast, dispersed nest distributions yielded approximately normal density distributions. Sections with high relative densities in the patchy nest distribution treatments also had relatively small juvenile body sizes, and patchy egg distribution appeared to produce a higher redistribution of individuals from the first to the second juvenile growth season than the dispersed distribution. 4. Because patchy breeding distribution combined with limited early dispersal can create spatial variation in density over scales directly relevant for individual interactions, this will be one important component in determining mean levels of early juvenile competition and its spatial variation within populations. Assuming random or ideal-free distribution of individuals may therefore underestimate the mean level of density experienced by juveniles over surprisingly small spatial scales (orders of magnitude smaller than total spatial extent of populations), even for mobile organisms.     

Sexual segregation by Masai giraffes at two spatial scales

In this paper alternative explanations for observed patterns of sexual segregation by giraffes are examined at two spatial scales: within-habitats and within-landscape. Habitats are defined as recognizable plant associations and the landscape as the collection of all available habitat types. The study was conducted in Mikumi National Park, Tanzania. At the within-landscape level, all sex and age classes of giraffes exhibited high degrees of preference for riverine habitats. Sex differences in habitat selection were mostly due to females with young, who tended to select open floodplain habitats in which their vigilance time was lowest. Males, and females without young, preferred more heavily-wooded habitat. Habitat preferences were not related to observed habitat-specific forage intake rates for either males or females. Within habitats, male and female giraffes selected different feeding heights, males feeding higher in the canopy than females. Females showed a strong tendency to generalize with respect to feeding height. It is suggested that a sexual dimorphism–body size hypothesis provides a parsimonious explanation for the observed feeding height selection patterns, whereas a reproductive strategy hypothesis can explain sex-differences in habitat selection patterns within the landscape.     

Interactions of gall-forming species at different plant spatial scales

Interspecific competition has been intensely studied as an organizing force in insect herbivore communities that can be mediated by changes in resource availability. We analyzed patterns of interspecific association of three species of gall-forming insects at shoot length class and shrub levels for Bauhinia brevipes through a null model program. Results show that shoots galled by three species were distributed independently among shoot length classes over 3-years, hence, no evidence of competition for shoots was found. Nevertheless, at the plant level our results suggest that there was a positive association. We found no evidence of any reciprocal negative effect because the density of species did not differ among shoot length classes. We suggest that this lack of pattern was probably due to: (a) host-plant resistance mediating interactions; (b) higher abundance of plant resource available, or (c) free-feeding herbivores mediating interactions by manipulating the resources used by gall-forming species.