Succession of Chitinolytic Microorganisms in Chernozem Soil

Microbiology - The chitinolytic prokaryotic and eukaryotic microbial complex of chernozem soil has been investigated in the course of a succession initiated by the introduction of chitin and...     

Removal of Phthalate Esters in Soil Column Inoculated with Microorganisms

The removal of phthalate esters, such as di-2-ethyl hexyl phthalate (DEHP) was efficiently effected by inoculating and retaining viable cells of Nocardia erythropolis, a bacterium known capable of rapidly degrading phthalate esters, in soil column. When an influent containing 3000 ppm of DEHP was passed through a column inoculated with Nocardia erythropolis, the eluent from the column was gas-chromatographically free of DEHP after 1 day. Residual DEHP on the support after 32 days in the column inoculated with Nocardia erythropolis was only 0.14% against the total amount of DEHP fed, whereas it was 5.2% in the uninoculated column. Microorganisms capable of utilizing DEHP were isolated from the inoculated and un- inoculated columns after 32 days operation and identified. The DEHP utilizing microorganisms in the inoculated column were found to belong to Nocardia erythropolis, Nocardia restricta and Pseudomonas putida (Biotype B), and those in the uninoculated column to Nocardia erythropolis, Pseudomonas putida (Biotype A and B) and Pseudomonas acidovorans. In particular, strain 1-1 of Nocardia erythropolis isolated from the inoculated column was morphologically and biochemically identical with the inoculated Nocardia erythropolis S-l. Ratio of all Nocardia erythropolis to total cells recovered increased from 10.8% immediately after inoculation to 27.2% after 32 days in inoculated column.     

Inoculation with a Native Soil Community Advances Succession in a Grassland Restoration

Restoration on post‐agricultural land may be hindered by the degradation of the soil community, which has been shown to contribute to structuring plant communities and driving succession. Our experiment tested the effect of inoculation with remnant grassland whole soil with or without nurse plants on the survival and growth of uninoculated early and late successional plant species. In 2007 and 2008, we planted uninoculated early, mid, and late successional plant species 0.25–2 m away from a central point of inoculated nurse plants. We found a negative response to inoculation on early successional plants and a positive response to inoculation on mid to late successional plants. This work suggests that the restoration of the soil community is critical to establishing a late successional plant community and that the benefit of inoculated plants can spread to neighbors.     

荒漠土壤藻群落结构的原生演替

微生物结皮是荒漠化治理中新的热点之一,但其关键形成生物--微型藻类如何通过群落结构的变化向地衣结皮、藓类结皮转变的机理仍是未知的.本文以时空替代法,将沙坡头流沙,4、8、17、34及42龄结皮当作同一群落演替进程中的6个阶段,通过系统聚类、丰分量分析的方法首次对这一问题进行了研究,结果显示该地荒漠藻群落的原生演替朝着蓝藻总丰度和爪哇伪枝藻(Scytonema javanicum)丰度逐渐下降,纤细席藻(Phormidiumtenue)、绿藻、硅藻丰度逐渐增加的方向进行;多样性随群落演替的发展而增高;生物量在初期呈正向演替,后期随地衣、藓类的入侵逐渐下降;演替速度非常缓慢,高龄结皮中的优势种仍是建群种,只是优势度略有下降;水分、植被覆盖、地形、时间,土壤理化性质都影响演替途径和速度,特别是Mn含量对演替有重要的阈值作用.     

荒漠土壤藻群落结构的原生演替

微生物结皮是荒漠化治理中新的热点之一,但其关键形成生物——微型藻类如何通过群落结构的变化向地衣结皮、藓类结皮转变的机理仍是未知的。本文以时空替代法,将沙坡头流沙,4、8、17、34及42龄结皮当作同一群落演替进程中的6个阶段,通过系统聚类、主分量分析的方法首次对这一问题进行了研究,结果显示该地荒漠藻群落的原牛演替朝着蓝藻总丰度和爪畦伪枝藻(Scytonema javanicum)丰度逐渐下降,纤细席藻(Phormidium tenue)、绿藻、硅藻丰度逐渐增加的方向进行;多样性随群落演替的发展而增高;生物量在初期呈正向演替,后期随地衣、藓类的入侵逐渐下降;演替速度非常缓慢,高龄结皮中的优势种仍是建群种,只是优势度略有下降;水分、植被覆盖、地形、时间,土壤理化性质都影响演替徐径和速度．特别是Mn含量对演替有重要的阈值作用。     

不同培养基对湖泊氨氧化细菌MPN计数的影响

本文研究了培养时间、培养基类型、硫酸铵浓度对湖泊沉积物与水中氨氧化细菌(AOB)MPN计数的影响.结果表明,MPN值随培养时间的延长而增大,且趋于稳定.对不同样品而言,培养40 d后,MSF培养基均给出稳定的MPN值.在3种不同类型的培养基(XZ-AOB、MSF、SW)中,MSF产生的MPN值最大.此外,培养基中的硫酸铵浓度对MPN计数亦有重要影响,与沉积物AOB相比,湖水AOB对硫酸铵浓度更为敏感.     

臭柏群落在不同演替阶段某些群落特征的研究

毛乌素沙地臭柏群落自发演替的基本过程为：半流动沙地沙竹＋沙米（有时是白沙蒿）群落→半固定沙地油蒿＋臭柏群落→固定沙地臭柏＋硬质早熟禾群落→固定沙地臭柏群落→老固定沙地臭柏＋苔藓群落,最后可能发展成为地带性的本氏针茅草原。演替早期向演替亚项级群落发展过程中物种多样性逐步增加,生态环境逐渐变湿。随着臭柏的衰退,某些喜湿植物的退出,物种多样性开始减少,群落生境向旱生化发展。     

臭柏群落在不同演替阶段某些群落特征的研究

毛乌素沙地臭柏群落自发演替的基本过程为：半流动沙地沙竹 +沙米（有时是白沙蒿）群落→半固定沙地油蒿+臭柏群落→固定沙地臭柏+硬质早熟禾群落→固定沙地臭柏群落→老固定沙地臭柏+苔藓群落,最后可能发展成为地带性的本氏针茅草原。演替早期向演替亚顶级群落发展过程中物种多样性逐步增加,生态环境逐渐变湿。随着臭柏的衰退,某些喜湿植物的退出,物种多样性开始减少,群落生境向旱生化发展。     

Microbial Community Succession in an Unvegetated,Recently Deglaciated Soil

Primary succession is a fundamental process in macroecosystems; however, if and how soil development influences microbial community structure is poorly understood. Thus, we investigated changes in the bacterial community along a chronosequence of three unvegetated, early successional soils (∼20-year age gradient) from a receding glacier in southeastern Peru using molecular phylogenetic techniques. We found that evenness, phylogenetic diversity, and the number of phylotypes were lowest in the youngest soils, increased in the intermediate aged soils, and plateaued in the oldest soils. This increase in diversity was commensurate with an increase in the number of sequences related to common soil bacteria in the older soils, including members of the divisions Acidobacteria, Bacteroidetes, and Verrucomicrobia. Sequences related to the Comamonadaceae clade of the Betaproteobacteria were dominant in the youngest soil, decreased in abundance in the intermediate age soil, and were not detected in the oldest soil. These sequences are closely related to culturable heterotrophs from rock and ice environments, suggesting that they originated from organisms living within or below the glacier. Sequences related to a variety of nitrogen (N)-fixing clades within the Cyanobacteria were abundant along the chronosequence, comprising 6–40% of phylotypes along the age gradient. Although there was no obvious change in the overall abundance of cyanobacterial sequences along the chronosequence, there was a dramatic shift in the abundance of specific cyanobacterial phylotypes, with the intermediate aged soils containing the greatest diversity of these sequences. Most soil biogeochemical characteristics showed little change along this ∼20-year soil age gradient; however, soil N pools significantly increased with soil age, perhaps as a result of the activity of the N-fixing Cyanobacteria. Our results suggest that, like macrobial communities, soil microbial communities are structured by substrate age, and that they, too, undergo predictable changes through time.     

Effect of Different Fertilizer Application on the Soil Fertility of Paddy Soils in Red Soil Region of Southern China

Appropriate fertilizer application is an important management practice to improve soil fertility and quality in the red soil regions of China. In the present study, we examined the effects of five fertilization treatments [these were: no fertilizer (CK), rice straw return (SR), chemical fertilizer (NPK), organic manure (OM) and green manure (GM)] on soil pH, soil organic carbon (SOC), total nitrogen (TN), C/N ratio and available nutrients (AN, AP and AK) contents in the plowed layer (0–20 cm) of paddy soil from 1998 to 2009 in Jiangxi Province, southern China. Results showed that the soil pH was the lowest with an average of 5.33 units in CK and was significantly higher in NPK (5.89 units) and OM (5.63 units) treatments (P<0.05). The application of fertilizers have remarkably improved SOC and TN values compared with the CK, Specifically, the OM treatment resulted in the highest SOC and TN concentrations (72.5% and 51.2% higher than CK) and NPK treatment increased the SOC and TN contents by 22.0% and 17.8% compared with CK. The average amounts of C/N ratio ranged from 9.66 to 10.98 in different treatments, and reached the highest in OM treatment (P<0.05). During the experimental period, the average AN and AP contents were highest in OM treatment (about 1.6 and 29.6 times of that in the CK, respectively) and second highest in NPK treatment (about 1.2 and 20.3 times of that in the CK). Unlike AN and AP, the highest value of AK content was observed in NPK treatments with 38.10 mg·kg⁻¹. Thus, these indicated that organic manure should be recommended to improve soil fertility in this region and K fertilizer should be simultaneously applied considering the soil K contents. Considering the long-term fertilizer efficiency, our results also suggest that annual straw returning application could improve soil fertility in this trial region.     

Effect of Four Nematocides on Activities of Microorganisms in Soil

Tests were conducted to determine the effects of four nematocides, Dasanit, carbofuran, D-D, and Vorlex on microbial activities in a loamy sand. The results indicated that bacterial and fungal populations initially decreased with some nematocide treatments but recovered rapidly to levels similar to those in the controls. In some instances, ammonium production from added peptone increased in the nematocide-treated soils, whereas mineralization of soil organic nitrogen and nitrification and oxidation of elemental sulfur were depressed. Oxygen consumption generally increased in proportion to the concentration of nematocide in the soil. However, with Vorlex, an increase in respiration was evident at the lower concentration, whereas an inhibitory effect occurred at the higher concentration. The study indicated that indigenous soil microorganisms can tolerate these chemicals used for control of nematodes in soil.     

Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

We investigated microbial succession on lake sturgeon (Acipenser fulvescens) egg surfaces over the course of their incubation period as a function of simulated stream flow rate. The primary objective was to characterize the microbial community assembly during succession and to examine how simulated stream flow rate affect the successional process. Sturgeon eggs were reared under three flow regimes; high (0.55 m/s), low (0.18 m/s), and variable (0.35 and 0.11 m/s alternating 12 h intervals). Eggs were collected from each flow regime at different egg developmental stages. Microbial community DNA was extracted from egg surface and the communities were examined using 16S rRNA gene-based terminal restriction fragment length polymorphism and 454 pyrosequencing. Analysis of these datasets using principal component analysis revealed that microbial communities were clustered by egg developmental stages (early, middle, and late) regardless of flow regimes. 454 pyrosequencing data suggested that 90–98 % of the microbial communities were composed of the phyla Proteobacteria and Bacteroidetes throughout succession. β-Protebacteria was more dominant in the early stage, Bacteroidetes became more dominant in the middle stage, and α-Proteobacteria became dominant in the late stage. A total of 360 genera and 5,826 OTUs at 97 % similarity cutoff were associated with the eggs. Midway through egg development, the egg-associated communities of the low flow regime had a higher diversity than those communities developed under high or variable flow regimes. Results show that microbial community turnover occurred during embryogenesis, and stream flow rate influenced the microbial succession processes on the sturgeon egg surfaces.     

盐碱地土壤微生物对不同改良方法的响应

实验室条件下分别模拟客土改良、排水改良、生物(苜蓿)改良等3种常用的盐碱地改良方法,以菜园土壤和盐碱土(未改良的原始土)作为对照,研究了土壤微生物生态特征对不同改良方法的响应。结果显示:①土壤微生物区系及生理生化指标均对不同改良方式有良好的响应,其中土壤脲酶活性随土壤盐碱胁迫加剧而提高;②3种改良方式中,客土法在短期内最能改善土壤微生物各指标,依次是排水法、生物法;③排水法对土壤微生物生态状况不利;④生物法对于改善土壤微生物生态状况速度相对较慢,但因其克服了客土法、排水法显见的缺点,相对有更好的应用前景。     

不同耕作方式稻田土壤细菌的多样性

对水稻-油菜双序列复种免耕(NT)、翻耕(CT)稻田土壤细菌多样性进行研究。采用平板计数法计数可培养细菌及放线菌数量,Miseq测序分析物种多样性及群落结构。结果表明,分别把3个样点的NT、CT耕作方式土样细菌、放线菌菌落总数之和作为NT、CT可培养细菌数量进行比较,NT可培养菌落总数比CT高10%;土壤未培养样品中共获得224 563条有效序列,其中NT 114 433条、CT 110 220条;指数分析表明CT相对丰度略低于NT、群落多样性略低于NT;样本中的细菌种类覆盖35个门、269个科、373个属。尽管从不同分类水平上,CT、NT样本物种相对丰度没有显著性差异,但NT中细菌门最大的变形菌门和有待深入研究的酸杆菌门物种的序列多于CT,厌氧绳菌科、未分类的硝化螺旋菌科和亚硝化单胞菌科序列多于CT,另外,未知和未培养的科、属水平上物种多于CT,根据物种特性,认为它们可能对固氮、降解纤维素等改变土壤理化特性,维持免耕土壤肥力起着重要的作用。     

Effect of Different Carbon Sources on Community Composition of Bacterial Enrichments from Soil

Soil is a highly heterogeneous matrix, which can contain thousands of different bacterial species per gram. Only a small component of this diversity (maybe <1%) is commonly captured using standard isolation techniques, although indications are that a larger proportion of the soil community is in fact culturable. Better isolation techniques yielding greater bacterial diversity would be of benefit for understanding the metabolic activity and capability of many soil microorganisms. We studied the response of soil bacterial communities to carbon source enrichment in small matrices by means of terminal restriction fragment length polymorphism (TRFLP) analysis. The community composition of replicate enrichments from soil displayed high variability, likely attributable to soil heterogeneity. An analysis of TRFLP data indicated that enrichment on structurally similar carbon sources selected for similar bacterial communities. The same analysis indicated that communities first enriched on glucose or benzoate and subsequently transferred into medium containing an alternate carbon source retained a distinct community signature induced by the carbon source used in the primary enrichment. Enrichment on leucine presented a selective challenge that was able to override the imprint left by primary enrichment on acetate. In a time series experiment community change was most rapid 18 hours after inoculation, corresponding to exponential growth. Community composition did not stabilize even 4 days after secondary enrichment. Four different soil types were enriched on four different carbon sources. TRFLP analysis indicated that in three out of four cases communities enriched on the same carbon source were more similar regardless of which soil type was used. Conversely, the garden soil samples yielded similar enrichment communities regardless of the enrichment carbon source. Our results indicate that in order to maximize the diversity of bacteria recovered from the environment, multiple enrichments should be performed using a chemically diverse set of carbon sources.     

不同药用植物根际土壤原核微生物多样性研究

为研究不同药用植物根际土壤中的原核微生物多样性,分别采集白术(Atractylodes macrocephala)、白芍(Paeonia sterniana)、牡丹(Paeonia suffruticosa)、玄参(Scrophularia ningpoensis)四种药用植物的根际土壤以及非种植区的土壤,针对16S rRNA基因的V3～V4区进行测序,分析土壤细菌群落的组成。结果表明,药用植物根际土壤中的细菌群落多样性指数显著高于非种植区土壤。五组样本的优势类群差异不大,总体相对丰度较高的有变形菌门(Proteobacteria)、酸杆菌门(Acidobacteria)、放线菌门(Actinobacteria)、芽单胞菌门(Gemmatimonadetes)、绿弯菌门(Chloroflexi)等,药用植物根际中的放线菌相对丰度高于非种植区。属水平上四种药用植物根际细菌和非种植区的群落结构有较大差异,四种中药材的根际土壤中各自富集了特异性的有益细菌属。药用植物根际土壤中的NMD1、Dongia、Gaiella、Streptomyces等相对丰度高于非种植区,而非种植区土壤中Lysoba...