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1.
A Gram-strain negative, rod-shaped and gliding bacterial strain, designated HD-44T, was isolated from a tidal flat sediment in the Korean peninsula. Strain HD-44T was found to grow optimally at pH 7.0–8.0, at 25° C and in the presence of 2–3 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain HD-44T falls within the clade comprising the Maribacter species, clustering with the type strains of Maribacter aquivivus, Maribacter ulvicola, Maribacter stanieri, Maribacter dokdonensis, Maribacter orientalis, Maribacter forsetii, Maribacter arcticus and Maribacter sedimenticola, with which it exhibits 97.1–98.3 % sequence similarity values. Sequence similarities to the type strains of the other recognized Maribacter species are 95.6–96.8 %. Strain HD-44T was found to contain MK-6 as the predominant menaquinone and iso-C17:0 3-OH, iso-C15:1 G, iso-C15:0 and summed feature 3 (C16:1 ω6c and/or C16:1 ω7c) as the major fatty acids. The major polar lipids were identified as phosphatidylethanolamine and two unidentified lipids. The DNA G+C content of strain HD-44T was determined to be 37.6 mol% and its mean DNA–DNA relatedness values with M. aquivivus KCTC 12968T, M. ulvicola KCTC 12969T, M. stanieri KCTC 22023T, M. dokdonensis DSW-8T, M. orientalis KCTC 12967T, M. forsetii KT02ds18-6T, M. arcticus KCTC 22053T and M. sedimenticola KCTC 12966T were 27.7–8.0 %. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain HD-44T is distinguishable from recognized Maribacter species. On the basis of the data presented, strain HD-44T is proposed to represent a novel species of the genus Maribacter, for which the name Maribacter caenipelagi sp. nov. is proposed. The type strain is HD-44T (= KCTC 32549T = CECT 8455T). 相似文献
2.
An amber-pigmented, Gram-negative, rod-shaped and aerobic bacterial strain devoid of flagella, designated strain JC2131(T) , was isolated from tidal flat sediment of Dongmak in Ganghwa island, South Korea. Identification was carried out on the basis of polyphasic taxonomy. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the isolate belonged to the family Flavobacteriaceae and showed the highest sequence similarity of 94.5% with Lutibacter litoralis KCCM 42118(T). The predominant cellular fatty acids were iso-C(15:0) (25.9%), iso-C(15:0) 3-OH (20.0%) and iso-C(13:0) (12.7%). Flexirubin-type pigments were absent. The major isoprenoid quinone was MK-6. The DNA G+C content was 43.7 mol%. Several phenotypic and chemotaxonomic properties including growth at pH 6, sea salts requirement, aesculin hydrolysis, carbon utilization, DNA G+C content and fatty acid profiles also differentiated the strain from the related members of the family. Therefore, results from the polyphasic taxonomy study suggested that strain JC2131(T) represents a novel genus and species in the family Flavobacteriaceae for which the name Marinitalea sucinacia gen. nov., sp. nov. is proposed (type strain JC2131(T)=KCTC 12705(T)=JCM 14003(T)). 相似文献
3.
Young-Ok Kim Sooyeon Park Bo-Hye Nam Yong-Taek Jung Dong-Gyun Kim Young-Ju Jee Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2013,103(6):1321-1327
A Gram-negative, non-spore-forming, aerobic, non-flagellated, non-gliding and rod-shaped bacterial strain, designated P-R2A1-2T, was isolated from sea squirt (Halocynthia roretzi) collected from the South Sea, Korea. It grew optimally at 25–28 °C, at pH 7.0–8.0 and in the presence of 2 % (w/v) NaCl. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that the strain fell within the clade comprising Tenacibaculum species. Strain P-R2A1-2T exhibited the highest 16S rRNA gene sequence similarity values of 97.6, 97.2 and 97.0 % to Tenacibaculum aestuarii SMK-4T, T. lutimaris TF-26T and T. aiptasiae a4T, respectively, and of 94.5–96.8 % to the type strains of the other Tenacibaculum species. Strain P-R2A1-2T contained MK-6 as the predominant menaquinone and C16:1 ω7c and/or iso-C15:0 2-OH, iso-C15:0 3-OH and iso-C15:0 as the major fatty acids. The DNA G + C content of strain P-R2A1-2T was 30.7 mol % and its DNA–DNA relatedness values with the type strains of T. aestuarii, T. lutimaris and T. aiptasiae were 17 ± 4.2, 21 ± 6.1 and 16 ± 5.2 %, respectively. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that the novel strain is separate from other Tenacibaculum species. On the basis of the data presented, strain P-R2A1-2T is considered to represent a novel species of the genus Tenacibaculum, for which the name Tenacibaculum halocynthiae sp. nov. is proposed. The type strain is P-R2A1-2T (=KCTC 32262T = CCUG 63681T). 相似文献
4.
5.
A Gram-negative, motile and rod-shaped bacterial strain, designated S7-3T, was isolated from a tidal flat sediment at Saemankum on the western coast of Korea. Phylogenetic analyses based on 16S rRNA gene and gyrB sequences showed that strain S7-3T belonged to the genus Shewanella, clustering with Shewanella decolorationis S12T. Strain S7-3T exhibited 98.8 % 16S rRNA gene sequence similarity and 96.8 % gyrB sequence similarity to S. decolorationis S12T, respectively. The 16S rRNA gene sequence similarity values between strain S7-3T and other members of the genus Shewanella were in the range of 93.0–98.0 %. Strain S7-3T contained simultaneously both menaquinones (MK) and ubiquinones (Q); the predominant menaquinone was MK-7 and the predominant ubiquinones were Q-7 and Q-8. The fatty acid profiles of strain S7-3T and S. decolorationis JCM 21555T were similar; major components were C17:1 ω8c, iso-C15:0 and iso-C15:0 2-OH and/or C16:1 ω7c. The DNA G+C content of strain S7-3T was 51.8 mol% and its mean DNA–DNA relatedness value with S. decolorationis JCM 21555T was 43 %. Differential phenotypic properties of strain S7-3T, together with the phylogenetic and genetic distinctiveness, revealed that this strain is distinguishable from recognized Shewanella species. On the basis of the data presented, strain S7-3T is considered to represent a novel Shewanella species, for which the name Shewanella seohaensis sp. nov. is proposed. The type strain is S7-3T (=KCTC 23556T = CCUG 60900T). 相似文献
6.
A Gram-stain negative, aerobic, non-motile, non-spore-forming and rod-shaped bacterial strain, BS-R1T, was isolated from a tidal flat at Boseong, South Korea. Strain BS-R1T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain BS-R1T belongs to the genus Algoriphagus, clustering consistently with the type strain of Algoriphagus mannitolivorans, with which it exhibited 98.4 % sequence similarity. Sequence similarities between strain BS-R1T and the type strains of the other Algoriphagus species were between 92.7 and 97.0 %. Strain BS-R1T was found to contain MK-7 as the predominant menaquinone and iso-C15:0, iso-C17:0 3-OH and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) as the major fatty acids. The major polar lipids of strain BS-R1T were identified as phosphatidylcholine, phosphatidylethanolamine and one unidentified lipid. The DNA G+C content was determined to be 42.3 mol% and its mean DNA–DNA relatedness values with A. mannitolivorans KACC 11349T was 17 ± 5 %. The phylogenetic and genetic distinctiveness and differential phenotypic properties demonstrated that strain BS-R1T is distinguishable from the other Algoriphagus species as well as A. mannitolivorans. On the basis of the data presented, strain BS-R1T is considered to represent a novel species of the genus Algoriphagus, for which the name Algoriphagus boseongensis sp. nov. is proposed. The type strain is BS-R1T (=KCTC 32580T = CECT 8446T). 相似文献
7.
A strictly aerobic, non-motile, ovoid-shaped Alphaproteobacteria, designated strain JC2049(T), was isolated from a tidal flat sediment sample. The results of 16S rRNA gene sequence analysis indicated that this isolate belonged to the genus Thalassobius, with a sequence similarity of 96.9-97.3% to other valid Thalassobius spp. The cells required 1-7% NaCl for growth (optimum 2%) and accumulated poly-beta-hydroxybutyrate. Nitrite was reduced to nitrogen, but nitrate was not reduced to nitrite. No genetic potential for aerobic anoxygenic photosynthesis was detected. The primary isoprenoid quinone (Ubiquinone-10), predominant cellular fatty acids (C(18:1)omega7c, 11 methyl C(18:1)omega7c and C(16:0)) and DNA G+C content (61 mol%) were all consistent with the assignment of this isolate to the genus Thalassobius. Several phenotypic characteristics clearly distinguished our isolate from other Thalassobius species. The degree of genomic relatedness between strain JC2049(T) and other Thalassobius species was in a range of 20-43%. The polyphasic data presented in this study indicates that our isolate should be classified as a novel species within the genus Thalassobius. The name Thalassobius aestuarii sp. nov. is therefore proposed for this isolate; the type strain is JC2049(T) (= IMSNU 14011(T) = KCTC 12049(T) = DSM 15283(T)). 相似文献
8.
Sooyeon Park Ji-Min Park Yong-Taek Jung Keun-Chul Lee Jung-Sook Lee Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2014,106(6):1139-1146
A Gram-stain negative, non-flagellated, non-gliding, aerobic and rod-shaped bacterium, designated GYSW-15T, was isolated from a seawater of Geoje island on the South Sea, South Korea, and subjected to a polyphasic taxonomic approach. Strain GYSW-15T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of approximately 2.0 % (w/v) NaCl. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain GYSW-15T belongs to the genus Polaribacter, clustering coherently with the type strain of Polaribacter porphyrae showing sequence similarity value of 97.0 %. Strain GYSW-15T exhibited 16S rRNA gene sequence similarity values of 94.3–96.4 % to the type strains of the other Polaribacter species. Strain GYSW-15T was found to contain MK-6 as the predominant menaquinone and iso-C15:0, iso-C15:1 G, iso-C16:0 3-OH and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) as the major fatty acids. The polar lipid profile of strain GYSW-15T containing phosphatidylethanolamine and an unidentified lipid as major components was similar to that of the type strain of P. porphyrae. The DNA G + C content of strain GYSW-15T was determined to be 31.2 mol% and its mean DNA–DNA relatedness with P. porphyrae LMG 26671T was 17 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain GYSW-15T is separated from recognized Polaribacter species. On the basis of the data presented, strain GYSW-15T is considered to represent a novel species of the genus Polaribacter, for which the name Polaribacter marinivivus sp. nov. is proposed. The type strain is GYSW-15T ( = KCTC 42156T = CECT 8655T) 相似文献
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10.
A Gram-staining-negative, non-spore-forming, aerobic, non-flagellated, non-gliding and rod-shaped bacterial strain, designated M-M3T, was isolated from marine sand on the southern coast of South Korea and subjected to a polyphasic study. Strain M-M3T was observed to grow optimally at 25–30 °C, at pH 7.0–8.0 and in the presence of 2 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain M-M3T fell within the clade comprising Nonlabens species, joining the type strain of Nonlabens ulvanivorans, with which it exhibited the highest 16S rRNA gene sequence similarity value of 99.4 %. Sequence similarity to the type strains of the other Nonlabens species was 93.0–95.2 % and <92.2 % to those of other species used in the phylogenetic analysis. Strain M-M3T was found to contain MK-6 as the predominant menaquinone and iso-C15:0 and iso-C17:0 3-OH as the major fatty acids. The major polar lipids were determined to be phosphatidylethanolamine, five unidentified lipids and one unidentified aminolipid. The DNA G+C content of strain M-M3T was determined to be 38.2 mol% and its DNA–DNA relatedness values with N. ulvanivorans DSM 22727T was 42 ± 6.2 %. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain M-M3T is separate from other Nonlabens species. On the basis of the data presented, strain M-M3T is considered to represent a novel species of the genus Nonlabens, for which the name Nonlabens arenilitoris sp. nov. is proposed. The type strain is M-M3T (=KCTC 32109T = CCUG 62919T). 相似文献
11.
Sooyeon Park Jung-Sook Lee Kenu-Chul Lee Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2013,103(6):1255-1262
A Gram-negative, non-flagellated, non-gliding and rod-shaped, coccoid or filamentous bacterial strain, designated YCS-16T, was isolated from coastal seawater from a seaweed farm on the South Sea, South Korea, and its taxonomic position was investigated by using a polyphasic study. Strain YCS-16T was observed to grow optimally at 30 °C, at pH 7.0–7.5 and in the presence of 2 % (w/v) NaCl. Strain YCS-16T exhibited the highest 16S rRNA gene sequence similarity values to the type strains of Bizionia echini (96.1 %), Formosa spongicola (95.8 %), Bizionia algoritergicola (95.5 %) and Psychroserpens mesophilus (95.4 %). Neighbour-joining and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain YCS-16T joined the cluster comprising the type strains of Psychroserpens species. Strain YCS-16T was found to contain MK-6 as the predominant menaquinone and iso-C17:0 3-OH, iso-C15:1 G and iso-C15:0 as the major fatty acids. The major polar lipids detected in strain YCS-16T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain YCS-16T was determined to be 35.7 mol%. The phylogenetic analysis, chemotaxonomic data and other phenotypic properties revealed that strain YCS-16T constitutes a new genus and species within the family Flavobacteriaceae, for which the name Geojedonia litorea gen. nov., sp. nov. is proposed. The type strain of Geojedonia litorea is YCS-16T (=KCTC 32260T = CCUG 63682T). 相似文献
12.
Sooyeon Park Soo-In Kim Chul-Hyung Kang Ji-Min Park Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2014,106(5):927-934
A Gram-stain negative, aerobic, motile and rod-shaped bacterial strain, designated J-MY2T, was isolated from a tidal flat sediment of the South Sea, South Korea. Strain J-MY2T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain J-MY2T forms a cluster with the type strains of Simiduia species. Strain J-MY2T exhibited 16S rRNA gene sequence similarity values of 97.62–98.77 % to the type strains of four Simiduia species and of <92.95 % sequence similarity to the type strains of the other recognized species. Strain J-MY2T was found to contain Q-8 as the predominant ubiquinone and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C16:0, C18:1 ω7c and C17:1 ω8c as the major fatty acids. The major polar lipids of strain J-MY2T were identified as phosphatidylethanolamine, phosphatidylglycerol, three unidentified glycolipids and one unidentified lipid. The DNA G+C content of strain J-MY2T was determined to be 54.8 mol% and its mean DNA–DNA relatedness values with the type strains of the four Simiduia species were in the range 21–34 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain J-MY2T is separated from other Simiduia species. On the basis of the data presented, strain J-MY2T is considered to represent a novel species of the genus Simiduia, for which the name Simiduia aestuariiviva sp. nov. is proposed. The type strain is J-MY2T ( = KCTC 42073T = CECT 8571T). 相似文献
13.
Sooyeon Park Chul-Hyung Kang Ja-Min Park Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2014,106(3):555-563
A Gram-negative, aerobic, non-flagellated and rod-shaped bacterial strain able to move by gliding, designated TYO-10T, was isolated from an oyster collected at Tongyoung on the South Sea, South Korea. Strain TYO-10T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain TYO-10T joined the cluster comprising the type strains of Mariniflexile species. Strain TYO-10T exhibited 16S rRNA gene sequence similarity values of 95.4–95.7 % to the type strains of Mariniflexile species and of less than 95.4 % to the type strains of other recognized species. Strain TYO-10T was found to contain MK-6 as the predominant menaquinone and iso-C15:0, iso-C15:1 G, anteiso-C15:0, iso-C17:0 3-OH and iso-C15:0 3-OH as the major fatty acids. The major polar lipids of strain TYO-10T were identified as phosphatidylethanolamine and an unidentified lipid, which is similar to those of the type strains of Mariniflexile species, but different from those of other phylogenetically related species. The DNA G+C content of strain TYO-10T was determined to be 35.9 mol%. The differential phenotypic properties, together with the phylogenetic distinctiveness, revealed that strain TYO-10T is separated from other Mariniflexile species. On the basis of the data presented, strain TYO-10T is considered to represent a novel species of the genus Mariniflexile, for which the name Mariniflexile ostreae sp. nov. is proposed. The type strain is TYO-10T (= KCTC 42113T = CECT 8622T). 相似文献
14.
A Gram-negative, facultatively anaerobic, non-motile and rod-shaped bacterial strain, designated SMK1-12T, was isolated from a tidal flat sediment on the western coast of Korea. Phylogenetic analyses based on 16S rRNA and gyrB gene sequences showed that strain SMK1-12T belonged to the genus Shewanella, clustering with the type strain of Shewanella amazonensis. Strain SMK1-12T exhibited the highest 16S rRNA gene sequence similarity value (97.0 %) and the highest gyrB sequence similarity value (87.8 %) to S. amazonensis SB2BT, respectively. Strain SMK1-12T contained simultaneously both menaquinones and ubiquinones; the predominant menaquinone was MK-7 and the predominant ubiquinones were Q-7 and Q-8. The major fatty acids (>10 % of the total fatty acids) detected in strain SMK1-12T were the MIDI system summed feature 3 (iso-C15:0 2-OH and/or C16:1 ω7c), iso-C15:0, C17:1 ω8c and C16:0. The DNA G+C content of strain SMK1-12T was 58.0 mol% and its mean DNA–DNA relatedness value with S. amazonensis ATCC 700329T was 15 ± 4.6 %. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain SMK1-12T is distinguishable from recognized Shewanella species. On the basis of the data presented, strain SMK1-12T is considered to represent a novel Shewanella species, for which the name Shewanella litorisediminis sp. nov. is proposed. The type strain is SMK1-12T (=KCTC 23961T = CCUG 62411T). 相似文献
15.
A Gram-negative, aerobic, non-motile, dark brown-coloured and rod-shaped bacterial strain, designated G-MB1T, was isolated from a tidal flat sediment of the South Sea, South Korea. Strain G-MB1T was found to grow optimally at 25 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain G-MB1T fell within the clade comprising Thalassomonas species, clustering with the type strains of Thalassomonas agarivorans, Thalassomonas loyana, Thalassomonas ganghwensis and Thalassomonas agariperforans, with which it exhibited 16S rRNA gene sequence similarity values of 96.0–96.9 %. The 16S rRNA gene sequence similarity values between strain G-MB1T and the type strains of the other Thalassomonas species were 94.6–95.1 %. Strain G-MB1T was found to contain Q-8 as the predominant ubiquinone and C16:0, C17:1 ω8c, C16:1 ω9c, C12:0 3-OH and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) as the major fatty acids. The major polar lipids of strain G-MB1T were phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminolipid. The DNA G+C content of strain G-MB1T was determined to be 42.4 mol%. Differential phenotypic properties, together with the phylogenetic distinctiveness, revealed that strain G-MB1T is separated from other Thalassomonas species. On the basis of the data presented, strain G-MB1T is considered to represent a novel species of the genus Thalassomonas, for which the name Thalassomonas fusca sp. nov. is proposed. The type strain is G-MB1T (=KCTC 32499T = NBRC 109830T). 相似文献
16.
A Gram-negative, non-motile and rod-shaped bacterial strain, designated BB-MW15T, was isolated from a tidal flat of the southern coast of the Korean peninsula, and its taxonomic position was investigated by using a polyphasic taxonomic approach. Strain BB-MW15T grew optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2–3 % (w/v) NaCl. Strain BB-MW15T exhibited the highest 16S rRNA gene sequence similarity values to the type strains of Marivita byunsanensis (96.8 %), Thalassobius maritimus (96.6 %), Sulfitobacter marinus (96.4 %) and Marinovum algicola (96.3 %). Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain BB-MW15T forms an independent lineage within the evolutionary radiation encompassed by the Roseobacter clade of the class Alphaproteobacteria. Strain BB-MW15T contained Q-10 as the predominant ubiquinone and C18:1 ω7c as the predominant fatty acid. The major polar lipids detected in strain BB-MW15T were phosphatidylcholine, phosphatidylglycerol, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain BB-MW15T is 62.7 mol%. Based on phylogenetic, chemotaxonomic and other phenotypic characteristics, strain BB-MW15T represents a new genus and a new species within Alphaproteobacteria, for which the name Aestuariihabitans beolgyonensis gen. nov., sp. nov. is proposed. The type strain of A. beolgyonensis is BB-MW15T (= KCTC 32324T = CCUG 63829T). 相似文献
17.
A Gram-negative, aerobic, non-motile and rod-shaped or ovoid bacterial strain, designated D1-W8T, was isolated from a tidal flat on the South Sea in South Korea. Strain D1-W8T was found to grow optimally at 25 °C, at pH 7.0–8.0 and in the presence of 2.0–3.0 % (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain D1-W8T clustered with the type strain of Pelagicola litoralis showing 97.1 % sequence identity. 16S rRNA gene sequences of the type strains of other species exhibited lower similarity values. Strain D1-W8T was determined to contain Q-10 as the predominant ubiquinone and C18:1 ω7c as the predominant fatty acid. The major polar lipids of strain D1-W8T were identified as phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain D1-W8T was determined to be 57.9 mol% and its DNA–DNA relatedness value with the type strain of P. litoralis was 17 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain D1-W8T is separate from P. litoralis. On the basis of the data presented, strain D1-W8T is considered to represent a novel species of the genus Pelagicola, for which the name Pelagicola litorisediminis sp. nov. is proposed. The type strain is D1-W8T (= KCTC 32327T = CECT 8287T). 相似文献
18.
Sooyeon Park Ja-Min Park Chul-Hyung Kang Jung-Hoon Yoon 《Antonie van Leeuwenhoek》2014,105(4):723-730
A Gram-negative, aerobic, non-motile and ovoid or rod-shaped bacterial strain, designated YM-20T, was isolated from a tidal flat of the Yellow Sea in South Korea. Strain YM-20T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in the presence of 2.0–3.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain YM-20T clustered consistently with the type strains of ‘Roseovarius marisflavi’ and Roseovarius lutimaris, with which it exhibited 16S rRNA gene sequence similarities of 99.86 and 98.71 %, respectively. Strain YM-20T was found to contain Q-10 as the predominant ubiquinone and C18:1 ω7c as the predominant fatty acid. The major polar lipids of strain YM-20T were identified as phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain YM-20T was determined to be 60.9 mol% and its DNA–DNA relatedness values with the type strains of ‘R. marisflavi’, R. lutimaris and Pelagicola litorisediminis were 53 ± 7.1, 22 ± 5.5 and 13 ± 4.7 %, respectively. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain YM-20T is separated from ‘R. marisflavi’, R. lutimaris, the other Roseovarius species and P. litorisediminis. On the basis of the data presented, strain YM-20T is considered to represent a novel species of the genus Roseovarius, for which the name Roseovarius gaetbuli sp. nov. is proposed. The type strain is YM-20T (= KCTC 32428T = CECT 8370T). 相似文献
19.
Jung MY Kim JS Paek WK Lim J Lee H Kim PI Ma JY Kim W Chang YH 《Journal of microbiology (Seoul, Korea)》2011,49(6):1027-1032
A Gram-positive, endospore-forming, new Bacillus species, strain BL4-6T, was isolated from tidal flat sediment of the Yellow Sea. Strain BL4-6T is a straight rod, with motility by peritrichate flagella. The cell wall contains meso-diaminopimelic acid, and the major respiratory quinone is menaquinone-7. The major fatty acids are iso-C15:0 and summed feature 3 (containing C16:1 ω7c/iso-C15:0 2OH, and/or iso-C15:0 2OH/C16:1 ω7c). Cells are catalase-positive and oxidase-negative. The G+C content of the genomic DNA is 38.0 mol%. Based on a comparative
16S rRNA gene sequence analysis, the isolate belongs to the genus Bacillus, forms a clade with the Bacillus cereus group, and is closely related to Bacillus mycoides (98.5%), Bacillus cereus (98.5%), Bacillus anthracis (98.4%), Bacillus thuringiensis (98.4%), Bacillus weihenstephanensis (98.1%), and Bacillus pseudomycoides (97.5%). The isolate showed less than 85% similarity of the gyrA gene sequence and below 95% similarity of the rpoB gene sequence to the members of this group. DNA-DNA relatedness between strain BL4-6T and B. cereus group was found to be in a range of 22.8–42.3%, and thus BL4-6T represents a unique species. On the basis of these studies, strain BL4-6T (=KCTC 13319T =JCM 15802T) is proposed to represent the type strain of a novel species, Bacillus manliponensis sp. nov. 相似文献
20.
A novel bacterial strain, designated WS-MY5T, capable of degrading a variety of polysaccharides was isolated from a brown algae (Undaria pinnatifida) reservoir at Wando in the South Sea, South Korea. Strain WS-MY5T was found to grow optimally at 30 °C, at pH 7.0–7.5 and in the presence of 2 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain WS-MY5T falls within the clade comprising Winogradskyella species, clustering with the type strains of Winogradskyella pacifica, Winogradskyella arenosi, Winogradskyella rapida and Winogradskyella thalassocola, with which it exhibited 16S rRNA gene sequence similarity values of 97.3–98.8 %. It exhibited sequence similarity values of 93.0–96.2 % to the type strains of the other recognized Winogradskyella species. Strain WS-MY5T was found to contain MK-6 as the predominant menaquinone and anteiso-C15:0, iso-C15:0, iso-C15:0 3-OH, iso-C17:0 3-OH and iso-C15:1 G as the major fatty acids. The major polar lipids of strain WS-MY5T were identified as phosphatidylethanolamine, two unidentified lipids and two unidentified aminolipids. The DNA G+C content of strain WS-MY5T was determined to be 33.2 mol% and its DNA–DNA relatedness values with the type strains of W. pacifica, W. arenosi, W. rapida and W. thalassocola were in the range 16–28 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, enabled strain WS-MY5T to be differentiated from the recognized Winogradskyella species. On the basis of the data presented here, strain WS-MY5T is considered to represent a novel species of the genus Winogradskyella, for which the name Winogradskyella undariae sp. nov. is proposed. The type strain is WS-MY5T (=KCTC 32261T=CCUG 63832T). 相似文献