Taxonomy and Morphology of Axonchium (Nematoda: Belondiroidea), and a description of A. thornei n. sp.

Useful diagnostic characters in the nematode genus A xonchium include: lip shape, styler length, shape of the esophageal constriction, presence or absence of spiral musculature in the esophageal sheath, proportion of the esophageal length occupied by the esophageal expansion, length and shape of cardia, shape of the vulva and vaginal cuticularization, development of the anterior gonad, shape of the posterior uterus, subcuticle thickness at mid-body, tail shape, number and arrangement of supplements and caudal pores, and body measurements. A. thornei n. sp. is separated from A. choristum by its thinner subcuticle at mid-body, number of supplements, and shorter spicules, from A. solitare by presence of males, and from both species by the female tail shape and shorter stylet. A. saccatum is synonymized with A. gossypii and A. nitidum is synonymized with A. bulbosum. A. leptocephalum, A. Iongicollis, A. magnicollis, and A. tenuicollis are made species inquirendae. A key to 25 species of Axonchium is given.     

The malarial parasites of Anolis species (Sauria: Iguanidae) in Panama

Lizards of the iguanid genus Anolis in Panama are parasitized by four species of Plasmodium. P.floridense occurs in A. limifrons, A. biporcatus, A. pentaprion and A. frenatus. The number of nuclei in mature schizonts is influenced by host species as is gametocyte shape but not gametocyte size. P. tropiduri parasitizes A. limifrons, A. pentaprion, A. biporcatus, A. frenatus, A. lionotus and A. poecilopus. The number of nuclei in schizonts varies according to host and type of blood cell parasitized. Gametocyte size varies slightly by host but shape remains relatively constant. Position of the parasite in the host cell may be affected by host species. Both schizonts and gametocytes are produced in white cells of all host species studied. P. balli occurs in A. limifrons, A. lionotus and A. poecilopus. Schizont and gametocyte size and shape are affected by host and blood cell type, with the parasite exhibiting different preferences for various blood cells in each host. P. minasense parasitizes A. limifrons, A. frenatus and A. capito, but its diagnosis in the last species may not be correct as gametocyte size and distribution of pigment differ considerably from other hosts. The mean number of nuclei in schizonts is not greatly affected by the host species. P. floridense is postulated to be of middle American origin in the genus Anolis, and to have reached Florida through the Caribbean.     

Resistance of Cysts of Amoebae to Microbial Decomposition

Cyst walls of Acanthamoeba rhysodes, A. palestinensis, A. castellanii, and one other strain of Acanthamoeba contain 36 to 45% protein and 20 to 34% carbohydrate. More than half of the protein in the walls of A. palestinensis, A. castellanii and Acanthamoeba sp. is accessible to and hydrolyzed by protease, and 67 to 69% of the carbohydrate of A. palestinensis and A. rhysodes walls is hydrolyzed by cellulase. The extent of hydrolysis of walls of the other amoebae by these enzymes is appreciably less, and chitinase and β-1,3-glucanase have no detectable effect. Protease solubilizes 10% or less of the weight of intact cysts, and no solubilization is observed with cellulase. Walls of A. palestinensis are extensively degraded in soil, the activity is less with A. rhysodes, and little attack on the other amoebae occurs. When added to soil, the protozoa excyst and grow for short periods, the trophozoites then die, and chiefly cysts persist thereafter.     

Partial structural studies of four Acacia gum exudates of the series phyllodineae

Methylation and hydrolysis studies have shown that gum specimens from Acacia difformis, A. mabellae, A. retinodes and A. rubida, which belong to Bentham's Series I (Phyllodineae), subseries 6F (Uninerves Racemosae), are similar structurally to those from A. podalyriifolia and A. pycnantha. This is further evidence that A. cyanophylla, which was placed next to A. pycnantha by Bentham, is atypical of the Series I Acacias.     

Modelling potential habitats for Artemisia sieberi and Artemisia aucheri in Poshtkouh area,central Iran using the maximum entropy model and geostatistics

Predicting potential habitats of endemic species is a suitable method for biodiversity conservation and rehabilitation of rangeland ecosystems. The present study was conducted to estimate the geographic distribution of Artemisia sieberi (A. sieberi) and Artemisia aucheri (A. aucheri), find the most important environmental predictor variables and seek for similarities and differences in habitat preferences between the two species for Poshtkouh rangelands in Central Iran. Maps of environmental variables were created by means of geographic information system (GIS) and geostatistics. Then predictive distribution maps of both species were produced using the maximum entropy modeling technique (Maxent) and presence-only data. Model accuracy is evaluated by using the area under the curve (AUC). Lime1, gravel1, lime 2 and elevation most significantly affect habitat distribution of A. aucheri, while habitat distribution of A. sieberi is affected by elevation, lime1, am1, lime2, and om2. For both species, elevation has an influence on their potential distributions. However, A. aucheri depends more on elevation, and consequently climate in comparison to A. sieberi. Finally, it is revealed that the potential distribution of A. aucheri is limited mostly to mountainous landscapes while A. sieberi is present in wide ranges of environmental conditions.     

Highly-potent,synthetic APOBEC3s restrict HIV-1 through deamination-independent mechanisms

The APOBEC3 (A3) genes encode cytidine deaminase proteins with potent antiviral and anti-retroelement activity. This locus is characterized by duplication, recombination, and deletion events that gave rise to the seven A3s found in primates. These include three single deaminase domain A3s (A3A, A3C, and A3H) and four double deaminase domain A3s (A3B, A3D, A3F, and A3G). The most potent of the A3 proteins against HIV-1 is A3G. However, it is not clear if double deaminase domain A3s have a generalized functional advantage to restrict HIV-1. In order to test whether superior restriction factors could be created by genetically linking single A3 domains into synthetic double domains, we linked A3C and A3H single domains in novel combinations. We found that A3C/A3H double domains acquired enhanced antiviral activity that is at least as potent, if not better than, A3G. Although these synthetic double domain A3s package into budding virions more efficiently than their respective single domains, this does not fully explain their gain of antiviral potency. The antiviral activity is conferred both by cytidine-deaminase dependent and independent mechanisms, with the latter correlating to an increase in RNA binding affinity. T cell lines expressing this A3C-A3H super restriction factor are able to control replicating HIV-1ΔVif infection to similar levels as A3G. Together, these data show that novel combinations of A3 domains are capable of gaining potent antiviral activity to levels similar to the most potent genome-encoded A3s, via a primarily non-catalytic mechanism.     

Shift towards autogamy in the extremely narrow endemic Aquilegia paui and comparison with its widespread close relative A. vulgaris (Ranunculaceae)

Aquilegia paui is an extremely narrowly endemic species from the northeastern Iberian Peninsula. It is restricted to a few populations with a reduced number of individuals living in summit rock cliffs. It is studied and compared to the widespread Aquilegia vulgaris to assess differences in their breeding system and pollination ecology, expected by their differences in flower morphology and by their habitat divergence. Pollinator exclusion experiments showed the capacity of A. paui to reach a full seed set in the absence of pollinators, whereas A. vulgaris notably reduced its reproductive success under these conditions. At the same time, no insect visits were detected in A. paui, whereas A. vulgaris was frequently visited, mainly by bumblebees and flies. Thus, an evolutionary shift toward autogamy in A. paui is discussed in relation to enhanced reproductive assurance. Additionally, we address reproductive isolation mechanisms that nowadays keep A. paui and A. vulgaris separated in spite of their ability to intercross and the existence of contact areas.     

Invasive Congeners Differ in Successional Impacts across Space and Time

Invasive species can alter the succession of ecological communities because they are often adapted to the disturbed conditions that initiate succession. The extent to which this occurs may depend on how widely they are distributed across environmental gradients and how long they persist over the course of succession. We focus on plant communities of the USA Pacific Northwest coastal dunes, where disturbance is characterized by changes in sediment supply, and the plant community is dominated by two introduced grasses – the long-established Ammophila arenaria and the currently invading A. breviligulata. Previous studies showed that A. breviligulata has replaced A. arenaria and reduced community diversity. We hypothesize that this is largely due to A. breviligulata occupying a wider distribution across spatial environmental gradients and persisting in later-successional habitat than A. arenaria. We used multi-decadal chronosequences and a resurvey study spanning 2 decades to characterize distributions of both species across space and time, and investigated how these distributions were associated with changes in the plant community. The invading A. breviligulata persisted longer and occupied a wider spatial distribution across the dune, and this corresponded with a reduction in plant species richness and native cover. Furthermore, backdunes previously dominated by A. arenaria switched to being dominated by A. breviligulata, forest, or developed land over a 23-yr period. Ammophila breviligulata likely invades by displacing A. arenaria, and reduces plant diversity by maintaining its dominance into later successional backdunes. Our results suggest distinct roles in succession, with A. arenaria playing a more classically facilitative role and A. breviligulata a more inhibitory role. Differential abilities of closely-related invasive species to persist through time and occupy heterogeneous environments allows for distinct impacts on communities during succession.     

Am E. coli gene product required for λ site-specific recombination

We report characteristics of himA mutations of E. coli, selected for their inability to support the site-specific recombination reaction involved in the formation of lysogens by bacteriophage λ. The himA allele lies at minute 38 on the chromosome. Three noncomplementing and closely linked mutations define the himA locus; one is a nonsense mutation which shows that the gene product is a protein. HimA mutations reduce both λ integrative and excisive site-specific recombination. Since dominance tests demonstrate that himA mutations are recessive, it is probable that the himA protein is either a necessary component for site-specific recombination or, alternatively, regulates the expression of such a function. HimA mutations exhibit pleiotropic effects. They reduce integration of phages that have different attachment specificities from λ and inhibit the growth of phage mu. In addition, himA mutations reduce precise excision of integrated phage mu as well as Tn elements. This pleiotropy suggests that the role of himA protein is nonspecific. Since all of the processes affected by himA mutations ultimately rely on protein-DNA interactions, we suggest that himA protein may act in an auxillary manner to facilitate these interactions.     

Genomic Markers for Differentiation of Francisella tularensis subsp. tularensis A.I and A.II Strains

Tularemia is caused by two subspecies of Francisella tularensis, F. tularensis subsp. tularensis (type A) and F. tularensis subsp. holarctica (type B). F. tularensis subsp. tularensis is further subdivided into two genetically distinct populations (A.I and A.II) that differ with respect to geographical location, anatomical source of recovered isolates, and disease outcome. Using two human clinical isolates, suppression subtractive hybridization was performed to identify 13 genomic regions of difference between A.I and A.II strains. Two PCR assays, one to identify A.I and A.II as well as to discriminate between F. tularensis subsp. holarctica and F. novicida and another specific for A.I, were developed. This is the first report to identify and characterize conserved genomic differences between A.I and A.II.     

Analysis of chromosome number and speculations on the origin of Arundo donax L. (Giant Reed)

Arundo donax (commonly called Giant Reed) is a perennial rhizomatous grass native to Asia, nowadays diffused all over the world. Due to its high biomass production and great adaptability to marginal land, interest in this species is increasing. In fact A. donax could represent an important and promising energy crop for heat and bioethanol second generation production. The propagation of A. donax is strictly agamic by rhizome fragmentation and cane node germination, strongly limiting the possibility of genetic improvement by breeding. The sterility could be caused by the fact that A. donax is a hybrid with uneven ploidy or a triploid species. It is difficult to propose an explanation for its sterility, because the chromosome number of A. donax is still a matter of debate, due to the high number and small size of the chromosomes; in the bibliography different counts ranging from 40 to 110 are reported. With the aim of establishing the chromosome number of A. donax we selected and counted 17 metaphase plates prepared from root tips obtained by hydroponic cultivation of cane nodes; our counts showed that A. donax most probably has 110 chromosomes. Our results suggested us two possible hypotheses, also based on SSR molecular marker results, concerning the evolutionary processes involved in the origins of A. Donax.     

Mannan-Degrading Enzymes from Cellulomonas fimi

The genes man26a and man2A from Cellulomonas fimi encode mannanase 26A (Man26A) and β-mannosidase 2A (Man2A), respectively. Mature Man26A is a secreted, modular protein of 951 amino acids, comprising a catalytic module in family 26 of glycosyl hydrolases, an S-layer homology module, and two modules of unknown function. Exposure of Man26A produced by Escherichia coli to C. fimi protease generates active fragments of the enzyme that correspond to polypeptides with mannanase activity produced by C. fimi during growth on mannans, indicating that it may be the only mannanase produced by the organism. A significant fraction of the Man26A produced by C. fimi remains cell associated. Man2A is an intracellular enzyme comprising a catalytic module in a subfamily of family 2 of the glycosyl hydrolases that at present contains only mammalian β-mannosidases.     

Specific Detection of Acanthamoeba species using Polyclonal Peptide Antibody Targeting the Periplasmic Binding Protein of A. castellanii

Acanthamoeba keratitis (AK) is a rare ocular disease, but it is a painful and sight-threatening infectious disease. Early diagnosis and adequate treatment are necessary to prevent serious complications. While AK is frequently diagnosis via several PCR assays or Acanthamoeba-specific antibodies, a more specific and effective diagnostic method is required. This study described the production of a polyclonal peptide antibody against the periplasmic binding protein (PBP) of A. castellanii and investigated its diagnostic potential. Western blot analysis showed that the PBP antibody specifically reacted with the cell lysates of A. castellanii. However, the PBP antibody did not interact with human corneal epithelial (HCE) cells and the other 3 major causative agents of keratitis. Immunocytochemistry (ICC) results revealed the specific detection of A. castellanii trophozoites and cysts by PBP antibodies when A. castellanii were co-cultured with HCE cells. PBP antibody specificity was further confirmed by co-culture of A. castellanii trophozoites with F. solani, S. aureus, and P. aeruginosa via ICC. The PBP antibody specifically reacted with the trophozoites and cysts of A. polyphaga, A. hatchetti, A. culbertsoni, A. royreba, and A. healyi, thus demonstrated its genus-specific nature. These results showed that the PBP polyclonal peptide antibody of A. castellanii could specifically detect several species of Acanthamoeba, contributing to the development of an effective antibody-based AK diagnostics.     

Geographical Segregation of the Neurotoxin-Producing Cyanobacterium Anabaena circinalis

Blooms of the cyanobacterium Anabaena circinalis are a major worldwide problem due to their production of a range of toxins, in particular the neurotoxins anatoxin-a and paralytic shellfish poisons (PSPs). Although there is a worldwide distribution of A. circinalis, there is a geographical segregation of neurotoxin production. American and European isolates of A. circinalis produce only anatoxin-a, while Australian isolates exclusively produce PSPs. The reason for this geographical segregation of neurotoxin production by A. circinalis is unknown. The phylogenetic structure of A. circinalis was determined by analyzing 16S rRNA gene sequences. A. circinalis was found to form a monophyletic group of international distribution. However, the PSP- and non-PSP-producing A. circinalis formed two distinct 16S rRNA gene clusters. A molecular probe was designed, allowing the identification of A. circinalis from cultured and uncultured environmental samples. In addition, probes targeting the predominantly PSP-producing or non-PSP-producing clusters were designed for the characterization of A. circinalis isolates as potential PSP producers.     

A new species of Asthenocotyle Robinson, 1961 (Monogenea: Microbothriidae), a skin parasite of the great lanternshark Etmopterus princeps Collett from the Azores, with a redescription of A. kaikourensis Robinson, 1961 and observations on A. taranakiensis Beverley-Burton, Klassen & Lester, 1987

Asthenocotyle azorensis n. sp. (Monogenea: Microbothriidae) is described from the dermal denticles of the great lanternshark Etmopterus princeps Collett off the Azores. The type-species of the genus, A. kaikourensis Robinson, 1961, is redescribed and additional observations are made on A. taranakiensis Beverley-Burton, Klassen & Lester, 1987. The generic diagnosis is revised. The new species is distinguished from its two congeners by the large size of the pharynx and fewer testes. The ejaculatory bulb of A. kaikourensis is much larger than those of A. taranakiensis and A. azorensis and is supplied with many ducts from an extensive field of male accessory gland-cells located outside the genital pouch and extending posteriorly to the region of the germarium and external seminal vesicle. Asthenocotyle taranakiensis is distinguished from the other two species by its copulatory sclerite, which forms a double loop, although this may not be the case when the copulatory organ is extended. The bodies of A. azorensis and A. kaikourensis are similar in shape, with the maximum width approximately 37% and 25%, respectively, of the total length from the anterior end. In addition to the relatively small size of the genital pouch and ejaculatory bulb in A. azorensis and A. taranakiensis, the vaginal opening is adjacent to the common genital opening. In A. kaikourensis, the vaginal opening is distant from and posterior to the common genital opening. The functional morphology of the copulatory organ of A. azorensis is considered. The relative importance, for the taxonomy of microbothriids, of the number of testes versus the anatomy of the copulatory complex is discussed.     

Reproductive biology and isolation mechanisms in rupicolous species of the Acianthera prolifera complex (Orchidaceae) occurring in southeastern Brazil

We studied the floral biology and performed experimental intra- and interspecific pollinations in populations of a complex of four Acianthera (Orchidaceae) species occurring in Brazilian campo rupestre vegetation (A.?hamosa, A.?limae, A.?modestissima, and A.?prolifera). All four species flower synchronously, are partially intercompatible, and exhibited some degree of self-sterility. Floral morphology is similar in all the species, with their principal differences associated with size of the floral structures. The four species were visited only by Diptera species of the families Phoridae (Megaselia spp.) and Chloropidae, but visits are rare and fruit set is very low. Sympatric species were not pollinated by the same Diptera species. Acianthera hamosa and A.?modestissima have the smallest flowers, and no marked morphological differences between them were observed; they were both pollinated by very similar Megaselia species. Both prepollination barriers and postpollination events are important to maintaining the isolation of the species, functioning as overlapping filters that diminish the possibility of gene flow between them. However, putative hybrids between A.?prolifera and A.?limae have been found. Conversely, A.?hamosa and A.?modestissima, which are recognized only by vegetative characters that show high phenotypic plasticity, seem only to be isolated by geographical barriers, and they may actually constitute a single species or be sister species.     

The genus Aerotegmina (Orthoptera, Tettigoniidae, Hexacentrinae): chromosomes, morphological relations, phylogeographical patterns and description of a new species

The genus Aerotegmina Hemp is common on East African mountains. Two species are known and a third, A. taitensis n. sp., is described in this paper. A. kilimandjarica Hemp is widespread while A. shengenae Hemp is endemic to the South Pare Mountains and A. taitensis n. sp. is known only from the Taita Hills. Morphologically, and from their song, A. shengenae and A. taitensis n. sp. are closely related. In chromosome number A. kilimandjarica (2n?=?33) differs clearly from A. shengenae (2n?=?27). Data presented on other flightless Orthoptera suggest that the South Pare Mountains and the Taita Hills, both belonging to the geologically old mountain chain of the Eastern Arc, show a faunistic similarity not shared by any other mountain range in the area. The mechanisms that led to this phylogeographic pattern in flightless Orthoptera in the Eastern Arc Mountains of northern Tanzania and southern Kenya and the inland volcanoes are discussed. A key to the three Aerotegmina species is presented, as well as bioacoustical data of all species compared to the phaneropterine species Euryastes jagoi.     

Stabilization of glucosaminephosphate synthase from rat liver by hexose 6-phosphates: Properties and interconversion of two molecular forms

Glucosaminephosphate synthase (glucosaminephosphate isomerase (glutamine-forming), EC 5.3.1.19) prepared from rat liver by extraction in the presence of glucose 6-phosphate (Glc-6-P) followed by precipitation with (NH₄)₂SO₄ is susceptible to digestion by trypsin. This enzyme, designated form A, can be converted to tryptic-insusceptible form B upon incubation with Glc-6-P or fructose 6-phosphate (Fru-6-P) at 37°C. The two forms also differ in the degree of activation by dithiothreitol, the degree of inhibition by methylglyoxal and the behavior on DEAE-Sephadex and Sephadex G-200 column chromatography.During purification with DEAE-Sephadex followed by hydroxyapatite, form B is converted to form A if Fru-6-P is absent and form A to form B if Fru-6-P is present. The two forms are therefore interconvertible. Under the conditions of purification, form B is more stable than form A, since the purity and yield of the final product are greater with form B than with form A.These findings suggest that the two forms of glucosaminephosphate synthase differ conformationally and that the equilibrium position depends on the concentration of Fru-6-P. Glc-6-P is effective only when it gives rise to Fru-6-P by mediation of glucose-phosphate isomerase.