Phosphate solubilization by organic anion excretion from rice (Oryza sativa L.) growing in aerobic soil

A mathematical model of P solubilization by organic anion excretion from roots is described and used to account for P solubilization by rice (Oryza sativa L.) plants growing in aerobic soil. In previous experiments with rice in an aerobic, highly-weathered, P-deficient soil, we found that the plants were able to solubilize P from an alkali-soluble pool and thereby increase their P uptake. The solubilization could not be explained by pH changes nor by the release of phosphatases. In subsequent experiments we found excretion of citrate from rice roots into nutrient solutions, and the synthesis and excretion of citrate tended to increase under P starvation. The model allows for the diffusion of the organic anion away from a root, its decomposition by soil microbes, its reaction with the soil in solubilizing P, and diffusion of the solubilized P back towards the root as well as away from it. We calculated the rate of citrate excretion from rice roots growing in soil based on measured steady-state citrate concentrations in the rhizosphere and calculated rates of decomposition. Calculations using these and other model parameters obtained independently showed that the observed solubilization and increased P uptake by rice growing in soil could be accounted for. A sensitivity analysis of the model is given. This revised version was published online in June 2006 with corrections to the Cover Date.     

New Phytologist 140 (1998), 709–714

In the December 1998 issue of New Phytologist , we published the research paper entitled 'Natural occurrence of Ampelomyces intracellular mycoparasites in mycelia of powdery mildew fungi' by Levente Kiss ( New Phytol. (1998) 140 , 709–714). Since its publication, an error in the published title has been brought to our attention: this refers to the ampelomyces , but the name should be Ampelomyces , meaning the genus.
We apologise to the author and to our readers for this mistake.     

Phosphorus efficiency and the forms of soil phosphorus utilized by upland rice cultivars

Experimental measurements of phosphorus (P) uptake and the forms of soil P depleted from an Ultisol by 6 upland rice cultivars are reported. In both P-fertilized and-unfertilized soil, the majority of P taken up was solubilized from a 0.1 M NaOH-soluble pool by root-induced changes. The soil pH within 4 mm of the roots was lowered by up to 0.5 units (from 4.6), but this by itself could not account for the P solubilized, and nor could increased phosphatase activity near the roots. The possible role of root-released low molecular weight organic acid anions in P solubilization is discussed. No significant differences in the extent of solubilization by a given root mass could be detected between cultivars. In P-unfertilized soil, but not in P-fertilized soil, there were significant differences between cultivars in internal P efficiency as measured by shoot dry weight per unit total plant P. In unfertilized soil, root growth and P uptake were strongly correlated with the P content of the seeds from which the plants were grown.     

Direct evidence showing the effect of root surface iron plaque on arsenite and arsenate uptake into rice (Oryza sativa) roots

The present study aimed to investigate the effects of root surface iron plaque on the uptake kinetics of arsenite and arsenate by excised roots of rice (Oryza sativa) seedlings. The results demonstrated that the presence of iron plaque enhanced arsenite and decreased arsenate uptake. Arsenite and arsenate uptake kinetics were adequately fitted by the Michaelis-Menten function in the absence of plaque, but produced poor fits to this function in the presence of plaque. Phosphate in the uptake solution did not have a significant effect on arsenite uptake irrespective of the presence of iron plaque; however phosphate had a significant effect on arsenate uptake. Without iron plaque, phosphate inhibited arsenate uptake. The presence of iron plaque diminished the effect of phosphate on arsenate uptake, possibly through a combined effect of arsenate desorption from iron plaque.     

Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review

In most soils, inorganic phosphorus occurs at fairly low concentrations in the soil solution whilst a large proportion of it is more or less strongly held by diverse soil minerals. Phosphate ions can indeed be adsorbed onto positively charged minerals such as Fe and Al oxides. Phosphate (P) ions can also form a range of minerals in combination with metals such as Ca, Fe and Al. These adsorption/desorption and precipitation/dissolution equilibria control the concentration of P in the soil solution and, thereby, both its chemical mobility and bioavailability. Apart from the concentration of P ions, the major factors that determine those equilibria as well as the speciation of soil P are (i) the pH, (ii) the concentrations of anions that compete with P ions for ligand exchange reactions and (iii) the concentrations of metals (Ca, Fe and Al) that can coprecipitate with P ions. The chemical conditions of the rhizosphere are known to considerably differ from those of the bulk soil, as a consequence of a range of processes that are induced either directly by the activity of plant roots or by the activity of rhizosphere microflora. The aim of this paper is to give an overview of those chemical processes that are directly induced by plant roots and which can affect the concentration of P in the soil solution and, ultimately, the bioavailability of soil inorganic P to plants. Amongst these, the uptake activity of plant roots should be taken into account in the first place. A second group of activities which is of major concern with respect to P bioavailability are those processes that can affect soil pH, such as proton/bicarbonate release (anion/cation balance) and gaseous (O₂/CO₂) exchanges. Thirdly, the release of root exudates such as organic ligands is another activity of the root that can alter the concentration of P in the soil solution. These various processes and their relative contributions to the changes in the bioavailability of soil inorganic P that can occur in the rhizosphere can considerably vary with (i) plant species, (ii) plant nutritional status and (iii) ambient soil conditions, as will be stressed in this paper. Their possible implications for the understanding and management of P nutrition of plants will be briefly addressed and discussed.     

Root phosphate exudation and pH shift in the rhizosphere are not responsible for aluminum resistance in rice

A series of hydroponic experiments and an agar culture experiment were carried out to investigate aluminum (Al) accumulation and translocation in two rice (Oryza sativa L.) cultivars (Kasalath and Koshihikari) that differ in Al resistance. Al-resistance mechanisms, including Pi exudation under Al stress and pH shifts in the rhizosphere, were also studied. Al content in rice shoots was 41 mg kg⁻¹ on average and did not differ between the two cultivars, which demonstrated that the rice cultivars were not Al accumulators. The majority of Al (95–97%) accumulated in roots. Al content in roots in the resistant cultivar (Koshihikari) was lower than that in the sensitive cultivar (Kasalath), which indicated that Al-exclusion mechanisms were mainly acting in rice. However, the rate of Pi exudation from the whole root or root tips was very low in both cultivars and was not significantly influenced by Al exposure, and thus seemed not to be the main Al-resistance mechanism. On the other hand, experiments with pH-buffered solution and color changes following culture in agar medium containing bromocresol purple revealed that the Al-induced pH increase could not explain the high Al resistance of rice. In addition, the Al content in shoots of Koshihikari was lower after the formation of iron plaque on the root surface, whereas that of Kasalath was not lower. These results suggested that rice roots cell wall components or root surfaces such as iron plaque, rather than pH changes and/or root exudates including organic acids and phosphate, play important roles in Al resistance in rice.     

The effects of root-induced pH changes on the depletion of inorganic and organic phosphorus in the rhizosphere

A new method allowing control of rhizosphere pH and mineral nutrition was applied to study depletion of various organic and inorganic phosphorus fractions extractable sequentially with 0.5M KHCO₃ (pH 8.5), 0.1M NaOH and residual P extractable with 6M H₂SO₄ from the rhizosphere soil.Soil pH was affected about 2 mm from the root mat. Depletion zones of inorganic P (KHCO₃-P_i) extractable with 0.5M KHCO₃ extended up to about 4 mm but the depletion zones of all other P fractions were about 1 mm only. The root-induced decrease of soil pH from 6.7 to 5.5 increased the depletion of total P from all fractions by 20% and depletion of KHCO₃-P_i and residual P by 34% and 43%, respectively. Depletion of organic P (KHCO₃-P_o) extractable with 0.5M KHCO₃ was not affected by a change in rhizosphere pH. With constant or increased pH, depletion of inorganic P (NaOH-P_i) was 17% and organic P (NaOH-P_o) was 22% higher than with decreased pH. Only 54–60% of total P withdrawn from all fractions was from KHCO₃-P_i. Substantial amounts of KHCO₃-P_o and NaOH-P_o were mineralized and withdrawn from the rhizosphere within 1 mm from the root mat, as 11–15% of total P withdrawn originated from the organic P fractions. A remaining 11–16% was derived from NaOH-P_i, and 15–18% from residual P fractions likely to be rather immobile. Thus, 40–46% of the P withdrawn near the root mat of rape originated from non-mobile P fractions normally not included in 0.5M NaHCO₃ extraction used to obtain an index of plant-available soil P.     

Active ion uptake and maintenance of cation-anion balance: A critical examination of their role in regulating rhizosphere pH

The processes responsible for maintenance of cation-anion balance in plants and their relation to active ion accumulation and changes in rhizosphere pH are outlined and discussed. The major processes involved are: (1) accumulation and degradation of organic acids which occur in the plant mainly as organic acid anions (and their transfer within the plant) and (2) extrusion of H⁺ or OH^– into the rhizosphere. The relative importance of the two processes is determined by the size of the excess anion or cation uptake. Indeed, plants typically absorb unequal quantities of nutritive cations (NH₄ ⁺+Ca²⁺+ Mg²⁺+K⁺+Na⁺) and anions (NO₃ ^–+Cl^–+SO₄ ^2–+H₂PO₄ ^–) and charge balance is maintained by excretion of an amount of H⁺ or OH^– which is stoichiometrically equal to the respective excess cation or anion uptake. The mechanisms and processes by which H⁺ and in particular OH^– ions are excreted in response to unequal cation-anion uptake are, however, poorly understood.The contemporary view is that primary active extrusion of H⁺, catalyzed by a membrane-located ATPase, is the major driving force for secondary transport of cations and anions across the plasma membrane. However, the fact that net OH^– extrusion often occurs (since excess anion absorption commonly takes place) implies there is a yet-to-be characterized OH^– ion efflux mechanism at the plasma membrane that is associated with anion uptake. There is, therefore, a need for future studies of the uptake mechanisms and stoichiometry of anion uptake; particularly that of NO₃ ^– which is often the predominant anion absorbed. Another related phenonenon which requires detailed study in terms of cation-anion balance is localized rhizosphere acidification which can occur in response to deficiencies of Fe and P.     

Genotypic variation of rice in phosphorus acquisition from iron phosphate: Contributions of root morphology and phosphorus uptake kinetics

To elucidate the contributions of rice root morphology and phosphorus uptake kinetics to P uptake by rice from iron phosphate, a sand culture experiment with either sufficient P supply (control treatment, 10 mg P/l as NaH₂PO₄) or Fe-P as the only source of P (40 mg P/pot as FePO₄ × 4H₂O) and a solution culture experiment supplied with either sufficient P (10 mg P/l) or deficient P (0.5 mg P/l) were conducted. Eight rice cultivars, which differed in P uptake from Fe-P, were investigated. Plant P uptake, root morphology, and P uptake kinetics were determined. There were significant (P < 0.05) genotypic variations in both plant dry weight and P uptake per plant among eight rice (Oryza sativa L.) cultivars when supplied with Fe-P as the P source. The Fe-P treatment significantly (P < 0.05) decreased plant dry weight, P uptake per plant, and P concentration in plant dry matter of all cultivars in comparison with the control plants. In Fe-P treated plants, significant (P < 0.05) genotypic variation was shown in root morphology, including root length, surface area, volume, and number of lateral roots. The P uptake per plant from Fe-P by rice was significantly (P < 0.05) correlated with root surface area and root volume as well as with the number of lateral roots, suggesting that the ability of rice to absorb P from Fe-P was closely related to root morphology. Low P supply in solution significantly increased the I _max (P < 0.05), but significantly decreased the K _M (P < 0.05) for P absorption by all rice cultivars. We supposed that kinetic characteristics of root P uptake could not account for the ability of rice to absorb P from Fe-P. Published in Russian in Fiziologiya Rastenii, 2007, Vol. 54, No. 2, pp. 260–266. The text was submitted by the authors in English.     

Seasonal changes in the effects of free-air CO2 enrichment (FACE) on growth, morphology and physiology of rice root at three levels of nitrogen fertilization

Over time, the relative effects of elevated [CO₂] on the aboveground photosynthesis, growth and development of rice (Oryza sativa L.) are likely to be changed with increasing duration of CO₂ exposure, but the resultant effects on rice belowground responses remain to be evaluated. To investigate the impacts of elevated [CO₂] on seasonal changes in root growth, morphology and physiology of rice, a free‐air CO₂ enrichment (FACE) experiment was performed at Wuxi, Jiangsu, China, in 2002–2003. A japonica cultivar with large panicle was exposed to two [CO₂] (ambient [CO₂], 370 μmol mol⁻¹; elevated [CO₂], 570 μmol mol⁻¹) at three levels of nitrogen (N): low (LN, 15 g N m⁻²), medium (MN, 25 g N m⁻²) and high N (HN, 35 g N m⁻²). Elevated [CO₂] increased cumulative root volume, root dry weight, adventitious root length and adventitious root number at all developmental stages by 25–71%, which was mainly associated with increased root growth rate during early growth period (EGP) and lower rate of root senescence during late growth period (LGP), while a slight inhibition of root growth rate occurred during middle growth period (MGP). For individual adventitious roots, elevated [CO₂] increased average length, volume, diameter and dry weight early in the season, but the effects gradually disappeared in subsequent stages. Total surface area and active adsorption area per unit root dry weight reached their maxima 10 days earlier in FACE vs. ambient plants, but both of them together with root oxidation ability per unit root dry weight declined with elevated [CO₂] during MGP and LGP, the decline being larger during MGP than LGP. The CO₂‐induced decreases in specific root activities during MGP and LGP were associated with a larger amount of root accumulation during EGP and lower N concentration and higher C/N ratio in roots during MGP and LGP in FACE vs. ambient plants. The results suggest that most of the CO₂‐induced increases in shoot growth of rice are similarly associated with increased root growth.     

Effect of gypsum,pressmud, fulvic acid and zinc sources on yield and zinc uptake by rice crop in a saline-sodic soil

Summary The application of fulvic acid to a saline-sodic soil augmented the solubility of zinc by thousands fold. Zinc fulvate when applied at levels equivalent to that of zinc sulphate was more effective in enhancing diffusion of zinc in the soil. Application of gypsum, zinc sulphate and fulvic acid significantly increased dry matter yield and uptake of zinc by rice crop in a saline-sodic soil. Application of gypsum with pressmud or with fulvic acid and zinc sulphate resulted in significantly higher yield and zinc uptake than in other treatments.     

Osmoregulation in Dunaliella tertiolecta: effects of salt stress,and the external pH on the internal pH

The intracellular pH of the halotolerant green algae Dunaliella tertiolecta, was determined by the distribution of 5,5-dimethyl-2(¹⁴C)-oxalolidine-2,5-dione (DMO) between the cell and the surrounding medium. 5,5-dimethyl-2(¹⁴C)oxalolidine-2,4-dione was not metabolized by the algal cells. The intracellular pH of Dunaliella tertiolecta was 6.8 in the dark and 7.4 in the light. During a salt stress, after two hours, the intracellular pH was increased by 0.2 pH units in both light and dark. The salt stressed cells maintained a constant pH of about 7.5 over the pH range of 6.5 to 8.5. Because of the relatively low permeability coefficient of the plasma membrane for DMO, this technique does not permit rapid pH determinations during the induction period after a salt stress. The magnitude of the salt induced pH changes measured 2 h after the salt stress implies a minor importance of this alkalization in this time range, but does not exclude a larger importance of pH changes for osmoregulation during the induction period.Abbreviations Chl chlorophyll - DMO 5,5-dimethyl-2(¹⁴C)oxalolidine-2,4-dione - PCV packed cell volume - SDS sodium dodecyl sulfate     

Mapping the structure of folding cores in TIM barrel proteins by hydrogen exchange mass spectrometry: the roles of motif and sequence for the indole-3-glycerol phosphate synthase from Sulfolobus solfataricus

To test the roles of motif and amino acid sequence in the folding mechanisms of TIM barrel proteins, hydrogen-deuterium exchange was used to explore the structure of the stable folding intermediates for the of indole-3-glycerol phosphate synthase from Sulfolobus solfataricus (sIGPS). Previous studies of the urea denaturation of sIGPS revealed the presence of an intermediate that is highly populated at approximately 4.5 M urea and contains approximately 50% of the secondary structure of the native (N) state. Kinetic studies showed that this apparent equilibrium intermediate is actually comprised of two thermodynamically distinct species, I(a) and I(b). To probe the location of the secondary structure in this pair of stable on-pathway intermediates, the equilibrium unfolding process of sIGPS was monitored by hydrogen-deuterium exchange mass spectrometry. The intact protein and pepsin-digested fragments were studied at various concentrations of urea by electrospray and matrix-assisted laser desorption ionization time-of-flight mass spectrometry, respectively. Intact sIGPS strongly protects at least 54 amide protons from hydrogen-deuterium exchange in the intermediate states, demonstrating the presence of stable folded cores. When the protection patterns and the exchange mechanisms for the peptides are considered with the proposed folding mechanism, the results can be interpreted to define the structural boundaries of I(a) and I(b). Comparison of these results with previous hydrogen-deuterium exchange studies on another TIM barrel protein of low sequence identify, alpha-tryptophan synthase (alphaTS), indicates that the thermodynamic states corresponding to the folding intermediates are better conserved than their structures. Although the TIM barrel motif appears to define the basic features of the folding free energy surface, the structures of the partially folded states that appear during the folding reaction depend on the amino acid sequence. Markedly, the good correlation between the hydrogen-deuterium exchange patterns of sIGPS and alphaTS with the locations of hydrophobic clusters defined by isoleucine, leucine, and valine residues suggests that branch aliphatic side-chains play a critical role in defining the structures of the equilibrium intermediates.