Historical processes explain fish diversity in the upper Amazon River basin

Hydrobiologia - Despite decades of investigation, there are few ecological studies on the Amazonian fish fauna that have looked both at the main factors shaping the fish assemblages at a regional...     

Evolution of lipid abundance and molecular composition during the podzolisation of laterites in the upper Amazon basin

In the upper Amazon basin, podzolisation involves the remobilization of large amounts of organic matter and chemical elements (Fe, Al, Si) previously accumulated in lateritic formations. In order to better understand the fate of organic matter in podzolic environments in this area, the evolution of lipid abundance and molecular composition were studied along a representative soil sequence showing the transition between a latosol and a well-developed podzol. Total solvent extracts were obtained from eight key soil samples from three profiles and their overlying litters, and enable us to follow both lateral and vertical evolutions. Lipid composition was determined by gas chromatography-mass spectrometry (GC-MS). Major compound classes include alkanes, alkanones, alkanols, alkanoic acids, ω-hydroxyacids, as well as aromatics, steroids and triterpenoids. Free lipids do not accumulate in the early stages of podzolisation but are abundant in well-developed podzolic horizons, possibly due to (i) combined acidity and waterlogging, (ii) limited amounts of complexing elements, (iii) a decreased microbial activity. The evolution of lipid composition is consistent with podzolisation mechanisms previously highlighted in the sequence. This paper provides further evidence for the occurrence of anoxic conditions in deep waterlogged podzolic horizons. It also shows that aromatic, phytotoxic compounds are stabilized in the well-developed podzol. This may play a role in the vegetation changes associated with podzolisation in the area.     

Group fusions and minimum group sizes in vervet monkeys (Cercopithecus aethiops)

Six unequivocal cases of group fusion occurred between 1984 and 1988 in a declining population of vervet monkeys (Cercopithecus aethiops) in Amboseli National Park, Kenya. In each case, the remaining group members abandoned their territory and joined a neighboring group shortly after the group lost its penultimate adult. Because the number of juveniles did not appear to influence the timing of fusion, only adults (both males and females) appear able to maintain vervet groups as cohesive units. After examining the relative contributions of adults and juveniles to groupliving, we infer that intergroup competition may be more important than predation avoidance in determining the timing of fusions.     

Biophysical stratification of the Amazon basin

In field measurement programmes, stratified sampling can optimize sampling efficiency, but stratification is often undertaken subjectively, and is frequently based on a priori classification schemes such as those used for vegetation maps. In order to avoid the problems associated with a priori subjective schemes, we explore here an objective procedure, Regression Tree Analysis (RTA). RTA has previously been used in local-scale studies, but here we apply it to a very large study domain, namely the entire humid tropical zone of South America. The aim of the study was to develop an optimal sampling design in preparation for the Large Scale Biosphere-Atmosphere Experiment in Amazonia (LBA). Co-registered spatially continuous fields of rainfall, temperature, photosynthetically active radiation (PAR), the normalized difference index (NDVI), an index of surface moisture, and other independent variables were used to predict three dependent variables, annual net radiation (Rn), latent heat (LE) and net primary production (NPP). Rather than simply dividing the study area based on differing levels of the three dependent variables, empirical models were developed using RTA to indicate how the relationships between these and possible forcing variables vary across the study area. For each variable long-term seasonal indices such as annual average, monthly minimum and amplitude were used to exclude effects of temporal phase differences between the hemispheres. The resulting hierarchical models revealed variations in the interdependence of the forcing variables throughout the study area and therefore provided a basis for a stratified sampling and identifying the most important variables to be collected in LBA for the Amazon basin as a whole as well as optimizing the sampling scheme for scaling up findings from the field scale to larger areas.     

Regional gains and losses of nitrogen in the Amazon basin

In order to better understand the relative importance of different ecosystems and nitrogen cycling processes within the Amazon basin to the nitrogen economy of this region, we constructed a generalized nitrogen budget for the region based on data for hydrologic losses of nitrogen and nitrogen fixation in Amazon forests. Data included information available for nitrogen in water entering and leaving both the entire basin and watersheds on oxisol and ultisol soils near Manaus, Brazil, in addition to biological nitrogen fixation in forests on ultisol, oxisol and entisol (‘varzea’) soils in Central Amazonia. Available data indicate that 4–6 kg N ha^?1 yr^?1 are lost via the River Amazonas, and that a similar amount enters in rainfall. Root-associated biological nitrogen fixation contributesca. 2 kg N ha^?1 yr^?1 to forests on oxisols, 20 kg N ha^?1 yr^?1 to forests on utisols, and 200 kg N ha^?1 yr^?1 to forests on fertile varzea soils. There is 5–10 fold more NH₄ ⁺?N than NO₃?N in rain and stream water entering and leaving the waterbasin near Manaus. Calculations based on these data plus certain assumption yield the following regional nitrogen balance estimate: inputs through bulk deposition of 36×10⁸ kg N yr^?1 and through biological nitrogen fixation of 120×10⁸ kg N yr^?1, and outputsvia the River Amazonas of 36×10⁸ kg N yr^?1 andvia denitrification and volatization (by difference) of 120×10⁸ kg N yr^?1.     

Distribution of aboveground live biomass in the Amazon basin

The amount and spatial distribution of forest biomass in the Amazon basin is a major source of uncertainty in estimating the flux of carbon released from land‐cover and land‐use change. Direct measurements of aboveground live biomass (AGLB) are limited to small areas of forest inventory plots and site‐specific allometric equations that cannot be readily generalized for the entire basin. Furthermore, there is no spaceborne remote sensing instrument that can measure tropical forest biomass directly. To determine the spatial distribution of forest biomass of the Amazon basin, we report a method based on remote sensing metrics representing various forest structural parameters and environmental variables, and more than 500 plot measurements of forest biomass distributed over the basin. A decision tree approach was used to develop the spatial distribution of AGLB for seven distinct biomass classes of lowland old‐growth forests with more than 80% accuracy. AGLB for other vegetation types, such as the woody and herbaceous savanna and secondary forests, was directly estimated with a regression based on satellite data. Results show that AGLB is highest in Central Amazonia and in regions to the east and north, including the Guyanas. Biomass is generally above 300 Mg ha⁻¹ here except in areas of intense logging or open floodplains. In Western Amazonia, from the lowlands of Peru, Ecuador, and Colombia to the Andean mountains, biomass ranges from 150 to 300 Mg ha⁻¹. Most transitional and seasonal forests at the southern and northwestern edges of the basin have biomass ranging from 100 to 200 Mg ha⁻¹. The AGLB distribution has a significant correlation with the length of the dry season. We estimate that the total carbon in forest biomass of the Amazon basin, including the dead and belowground biomass, is 86 Pg C with ±20% uncertainty.     

Isolation of fungi from bats of the Amazon basin

A total of 2,886 bats captured in the Amazon Basin of Brazil were processed for the isolation of fungi. From the livers, spleens, and lungs of 155 bats (5.4%), 186 fungal isolates of the genera Candida (123 isolates), Trichosporon (26 isolates), Torulopsis (25 isolates), Kluyveromyces (11 isolates), and Geotrichum (1 isolate) were recovered. Seven known pathogenic species were present: Candida parapsilosis, C. guilliermondii, C. albicans, C. stellatoidea, C. pseudotropicalis, Trichosporon beigelii, and Torulopsis glabrata. Twenty-three culture-positive bats showed identical fungal colonization in multiple organs or mixed colonization in a single organ. The fungal isolation rates for individual bat species varied from 1 fungus per 87 bats to 3 fungi per 13 bats, and the mycoflora diversity for members of an individual fungus-bearing bat species varied from 16 fungi per 40 bats to 7 fungi per 6 bats. Of the 38 fungal species isolated, 36 had not been previously described as in vivo bat isolates. Of the 27 culture-positive bat species, 21 had not been previously described as mammalian hosts for medically or nonmedically important fungi.     

HIV prevention for indigenous people of the Amazon basin.

This study identifies theoretically-based predictors of condom use in a sample of 251 sexually active adults recruited from Sao Gabriel da Cachoeira and six indigneous communities of the Upper Rio Negro region of Amazonas Brazil. The information-motivation-behavioral skills (IMB) model of AIDS-preventive behavior was used to describe the roles of HIV/AIDS knowledge, experiences with and attitudes toward condom use, peer influences, perceived vulnerability, monogamy and behavioral skills. A predictive path analytic model revealed significant predictors of more condom use including male gender, greater sexual HIV knowledge, positive experiences and attitudes about condom use, multiple partners, and greater behavioral skills. Results suggest that attention to behavioral skills for negotiating safer sex and instruction in the correct use of condoms are important elements in reducing high risk behaviors. Increasing the specific knowledge level of indigenous people regarding the complexities of sexual transmission of HIV is crucial and should be addressed. Heightening individuals' understanding of the limited protection of serial monogamy, and the need to conduct gender-specific training for behavior change to reduce transmission of HIV should be an additional goal of Brazilian health professionals. Obstacles to the implementation of the IMB HIV prevention program in Amazonas are noted and an alternative Brazilian HIV/AIDS prevention program is discussed.     

Isolation of fungi from bats of the Amazon basin.

A total of 2,886 bats captured in the Amazon Basin of Brazil were processed for the isolation of fungi. From the livers, spleens, and lungs of 155 bats (5.4%), 186 fungal isolates of the genera Candida (123 isolates), Trichosporon (26 isolates), Torulopsis (25 isolates), Kluyveromyces (11 isolates), and Geotrichum (1 isolate) were recovered. Seven known pathogenic species were present: Candida parapsilosis, C. guilliermondii, C. albicans, C. stellatoidea, C. pseudotropicalis, Trichosporon beigelii, and Torulopsis glabrata. Twenty-three culture-positive bats showed identical fungal colonization in multiple organs or mixed colonization in a single organ. The fungal isolation rates for individual bat species varied from 1 fungus per 87 bats to 3 fungi per 13 bats, and the mycoflora diversity for members of an individual fungus-bearing bat species varied from 16 fungi per 40 bats to 7 fungi per 6 bats. Of the 38 fungal species isolated, 36 had not been previously described as in vivo bat isolates. Of the 27 culture-positive bat species, 21 had not been previously described as mammalian hosts for medically or nonmedically important fungi.     

Two remarkable new trichomycterid catfishes from the Amazon basin in Brazil and Colombia

Two Amazonian freshwater trichomycterid catfishes, Sarcoglanis simplex and Malacoglanis gelatinosus , are described as new genera andspecies and placed in a new subfamily Sarcoglanidinae. The relationships of this new subfamily and those of the Trichomycterinae, Nematogenyinae, Phreatobiinae and Glanapteryginae are discussed.     

Composition of ichthyofauna of the upper Don basin

The characteristic of species composition of ichthyofauna of the upper Don basin, including data on moderate and small rivers, is provided for the first time. The examined part of the basin embraces territories of Tula, Ryazan, Lipetsk, Tambov, and Voronezh oblasts. A total of 51 species—66.7% of the total number of species recorded in water courses of the entire Don basin—were recorded in the ichthyofauna of the region. The decrease in the number of species in the upper Don basin as compared to its other sections proceeds mainly at the expense of marine and euryhaline species, as well as due to anadromous acipenserids. In this part of the basin, a smaller number of invading species was also recorded. However, Amur sleeper Perccottus glenii that was not discovered so far in other parts of the basin has dispersed here sufficiently widely. The wide distribution of bearded stone loach Barbatula barbatula and minnow Phoxinus phoxinus can be possibly also considered a distinguishing feature of fish population of the upper reaches of the Don in relation to other sites.     

Soil phosphorus movement and budget after 13 years of fertilized cultivation in the Amazon basin

Agronomic studies on soil phosphorus dynamics have primarily focused on the plant-available inorganic P pool. However organic P and less labile inorganic pools can contribute significantly to plant P uptake. The objectives of this study were to determine the changes in inorganic and organic P pools of varying lability in and below the plowlayer after 13 years of continuous cultivation and fertilization on a Typic Paleudult in Yurimaguas, Peru. The field experiment was established after slash and burn of a secondary forest and included non-fertilized and fertilized treatments. The yearly cropping pattern consisted of an upland rice (Oryza sativa),-corn (Zea mays),-soybean (Glycine max) rotation. A modified version of the Hedley et al. procedure was used to sequentially fractionate soil P into increasingly recalcitrant organic and inorganic pools. Plowlayer accumulation of the fertilizer P occurred in all P pools. The greatest increase was in the NaOH extractable inorganic P pool. In the non-fertilized plots, the organic P decreased by 42%. Phosphorus fertilization resulted in significant movement of P below plowlayer. The accumulation occurred mostly in inorganic and organic P pools that are not quantified by traditional soil-P test methods. In fertilized plots sub-plowlayer total P increased by 90 g g^–1 (87%) while resin extractable P increased only 4 g g^–1. Phosphorus content of the organic P pools below the plowlayer increased by 24 g g^–1 (50%) in fertilized plots. The inclusion of less labile P pools in studies of P movement and the evaluation of P fertilizer residual values could lead to a better understanding of P dynamics and hence better management of P fertilization.     

Metagenomics of the water column in the pristine upper course of the Amazon river

River water is a small percentage of the total freshwater on Earth but represents an essential resource for mankind. Microbes in rivers perform essential ecosystem roles including the mineralization of significant quantities of organic matter originating from terrestrial habitats. The Amazon river in particular is famous for its size and importance in the mobilization of both water and carbon out of its enormous basin. Here we present the first metagenomic study on the microbiota of this river. It presents many features in common with the other freshwater metagenome available (Lake Gatun in Panama) and much less similarity with marine samples. Among the microbial taxa found, the cosmopolitan freshwater acI lineage of the actinobacteria was clearly dominant. Group I Crenarchaea and the freshwater sister group of the marine SAR11 clade, LD12, were found alongside more exclusive and well known freshwater taxa such as Polynucleobacter. A metabolism-centric analysis revealed a disproportionate representation of pathways involved in heterotrophic carbon processing, as compared to those found in marine samples. In particular, these river microbes appear to be specialized in taking up and mineralizing allochthonous carbon derived from plant material.     

Group extinction and fusion in free-ranging vervet monkeys

Three cases of group fusion were observed among vervet monkeys in Amboseli National Park, Kenya, during the 1984 drought. In all cases, group fusion involved the migration of at least two females into a small neighboring group. Following migration, the females' natal groups ceased to exist. Although migrants initially assumed low ranks, none received high rates of aggression, and two rose in rank 6 months after their arrival. Migrant females appeared to employ a number of “strategies,” including grooming, allomothering, participation in intergroup encounters, and the formation of coalitions against males and each other to hasten integration. Results suggest that the causes of male and female migration differ fundamentally, and that group fusion occurs primarily in response to the inability of small groups of females to compete successfully with other groups for resources.     

A new species of Graffenrieda (Melastomataceae) from the northern Amazon basin

A new species of Graffenrieda (Melastomataceae: Merianieae) from northern Brazil and southern Venezuela is described. Graffenrieda laevicarpa closely resembles the morphologically variable and complex G. caryophyllea, but can be distinguished based on leaf morphology and pubescence, and by its shiny capsules.     

Groundwater nitrogen dynamics at the terrestrial-lotic interface of a small catchment in the Central Amazon basin

Processes operating at the terrestrial-lotic interface may significantly alter dissolved nitrogen concentrations in groundwater as a result of shifting redox conditions and microbial communities. We monitored concentrations of total dissolved nitrogen, NO ₄ ^– , NH ₄ ^– , O₂ and Fe²⁺ for 10 months along two transects tracing groundwater flow from an upland (terra firme) forest, beneath the riparian forest, and into the stream channel of a small Central Amazonian catchment. Our aim was to examine the role of near-stream processes in regulating groundwater transfers of dissolved nitrogen from terrestrial to lotic ecosystems in the Central Amazon. We found pronounced compositional differences in inorganic nitrogen chemistry between upland, riparian, and stream hydrologic compartments. Nitrate dominated (average 89% of total inorganic nitrogen; TIN) the inorganic nitrogen chemistry of oxygenated upland groundwater but decreased markedly upon crossing the upland-riparian margin. Conversely, NH ₄ ^– dominated (average 93% of TIN) the inorganic chemistry of apparently anoxic riparian groundwater; NH ₄ ^– and TIN concentrations decreased markedly across the riparian-stream channel margin. In the oxygenated streamwater, NO ₃ ^– again dominated (average 82% of TIN) inorganic nitrogen chemistry. Denitrification followed by continued ammonification is hypothesized to effect the shift in speciation observed at the upland-riparian margin, while a combination of several processes may control the shift in speciation and loss of TIN observed at the riparian-stream margin. Dissolved organic nitrogen concentrations did not vary significantly between upland and riparian groundwater, but decreased across the riparian-stream margin. Our data suggest that extensive transformation reactions focused at the upland and stream margins of the riparian zone strongly regulate and diminish transfers of inorganic nitrogen from groundwater to streamwater in the catchment. This suggestion questions the veracity of attempts in the literature to link stream nitrogen chemistry with nutrient status in adjacent forests of similar catchments in the Central Amazon. It also complicates efforts to model nitrogen transfers across terrestrial-lotic interfaces in response to deforestation and changing climate.