Local habitat complexity correlates with song complexity in a vocally elaborate honeyeater

Song complexity is an important behavioural trait in songbirds, subject to sexual selection. Elucidation of intraspecific variation in song complexity can provide insights into its evolution. In this study, we investigated song complexity variation in tūī (Prosthemadera novaeseelandiae), a vocally complex songbird endemic to New Zealand. At two separate nature reserves, we recorded male songs in two habitat types: forest remnants with high habitat complexity, and open habitats with lower habitat complexity. Analyses indicated strong evidence that song complexity was higher in forest habitats. Possible explanations for this divergence include: (i) competition between individuals results in higher quality, dominant males with more complex songs occupying forest habitats, and less competitive males occupying open habitat zones; (ii) forest habitats provide more abundant resources therefore higher tūī density, resulting in more complex songs; and (iii) a higher abundance of food in dense forest habitats may reduce nutritional stress during development resulting in full development of song nuclei. However, these hypotheses on the drivers of habitat effects on tūī song complexity remain to be tested.     

East African coastal forest under pressure

The Arabuko Sokoke dryland coastal forest along the East African coastline provides a unique habitat for many endangered endemic animal and plant species. High demographic pressure with subsequent land-splitting, soil depletion in combination with erratic rainfalls and the collapse of the tourism industry are negatively affecting food security and human livelihood quality in this region. Food crops were originally produced by subsistence farming, but have now to be purchased at local- and super-markets, constituting a major financial burden for the local people. In consequence, overexploitation of natural resources from Arabuko Sokoke forest (illegal logging, charcoal burning, poaching of wild animals) increased during the past years. In this commentary we document ecosystem heterogeneity leading to high species richness. We discuss direct and indirect drivers of habitat degradation of the Arabuko Sokoke forest, and critically reflect current and future solutions. Key drivers of habitat destruction and biodiversity loss are (i) illegal timber logging and removal of woody biomass, (ii) poaching of bush-meat, (iii) exceeding of the carrying capacity by the local elephant population, restricted to Arabuko Sokoke by an electric fence, and (iv) weak governance structures and institutional confusion exacerbating illegal exploitation of natural resources. Potential solutions might be: Provisioning of additional income sources; reforestation of the surrounding areas in the framework of REDD+ activities to create a buffer around the remaining primary forest; improving governance structures that formulates clear guidelines on future usage and protection of natural resources within the Arabuko Sokoke forest; and family planning to counteract human demographic pressure and the exploitation of natural resources.     

Influence of environmental factors on shark and ray movement,behaviour and habitat use: a review

Any attempt to describe the spatial ecology of sharks and rays should consider the drivers responsible for movement. Research has shown fluctuations in the environment (abiotic factors) can trigger movement and changes in behaviour and habitat use for many elasmobranch species. Most studies to date have selectively focused on a small number of abiotic factors (i.e. temperature, salinity); however, other factors such as dissolved oxygen, tide, photoperiod, barometric pressure and pH have also been documented to act as drivers of movement in shark and ray species. Although usually examined individually, abiotic factors rarely act in isolation and often differ in their level of influence between species, sex, ontogenetic stage, season and geographic location. This paper reviews the role of abiotic factors as a driver of movement and changes in behaviour and habitat use in elasmobranchs. In the context of a changing climate, insight into how sharks and rays may respond to fluctuating environmental conditions projected under future scenarios is required.     

Effects of alternate reef states on coral reef fish habitat associations

The present study describes ontogenetic shifts in habitat use for 15 species of coral reef fish at Rangiroa Atoll, French Polynesia. The distribution of fish in different habitats at three ontogenetic stages (new settler, juvenile, and adult) was investigated in coral-dominated and algal-dominated sites at two reefs (fringing reef and inner reef of motu). Three main ontogenetic patterns in habitat use were identified: (1) species that did not change habitats between new settler and juvenile life stages (60% of species) or between juvenile and adult stages (55% of species—no ontogenetic shift); (2) species that changed habitats at different ontogenetic stages (for the transition “new settler to juvenile stage”: 15% of species; for the transition “juvenile to adult stage”: 20% of species); and (3) species that increased the number of habitats they used over ontogeny (for the transition “new settler to juvenile stage”: 25% of species; for the transition “juvenile to adult stage”: 25% of species). Moreover, the majority of studied species (53%) showed a spatial variability in their ontogenetic pattern of habitat use according to alternate reef states (coral reef vs algal reef), suggesting that reef state can influence the dynamics of habitat associations in coral reef fish.     

Environmental correlates of tree species distributions vary among age classes in a northern temperate forest

Processes involved in the structuring of forest communities include: (1) ecological sorting, where species poorly suited to local conditions are subject to environmental filtering and competitive displacement; (2) disturbance, resulting in stochastic removal of individuals and reinitiating successional regimes and (3) dispersal limitation, inhibiting the infiltration of species into preferred sites. Temporal dynamics in these processes lead to difficulty inferring causal landscape?Cbiota correlations. Complicating factors include potential for ontogenetic variation in habitat preferences among age classes, and inherent ambiguity regarding severity and coverage of historical disturbance events. Sorting species into age groups can provide relevant temporal information. Fundy National Park is a northern, mixed-temperate forest in Atlantic Canada (Acadian forest type), which was pervasively altered upon European settlement. Species frequency data for three tree age classes (saplings, juveniles and adults) in permanent sample plots (400?m², n?=?33) were compared to environmental data, including soil chemistry, understory light conditions, physiography and disturbance history using ordination and randomization techniques. Abiotic and disturbance-related predictors of species distributions differed among life stages. Specifically, in the adult stage, stand age was a critical predictor of distribution, whereas in younger age classes environmental variables such as nutrient availability and soil moisture and drainage were key drivers of distribution. It is concluded that older populations were increasingly less constrained by environmental conditions, suggesting that adult populations bear the legacy of stochastic landscape alteration, thus appearing randomly distributed along environmental gradients. As younger populations gradually expand in distribution, they are filtered into preferred conditions by ecological sorting. These findings indicate the importance of considering age-class effects and site history in further assessments of interactions between landscapes and flora.     

Habitat‐dependent population regulation in an irrupting population of long‐nosed bandicoots (Perameles nasuta)

We used isodars to analyse habitat‐dependent population regulation by long‐nosed bandicoots Perameles nasuta during an irruption and subsequent population crash in three habitats (heath, woodland and forest) at Booderee National Park, south‐eastern Australia. Specifically, we aimed to see whether patterns of habitat‐dependent population regulation matched a priori estimates of quantitative and qualitative differences between habitats. We also tested if habitat preference changed between the increasing and decreasing phase of the irruption as predicted by the reciprocating dispersal theory. Quantitative differences in habitat quality were indexed by the relative abundance of the main food of long‐nosed bandicoots (terrestrial invertebrates), while qualitative differences were indexed by the availability of refuge from predation (vegetation understorey density). One index of fitness, body weight, was highest in forest, and lowest in heath, suggesting an ideal despotic model of habitat selection. Over the entire course of the irruption, there was density‐dependent habitat selection with forest and woodland both quantitatively superior to heath. This reflected the overall abundance of invertebrates with highest abundance in woodland and forest and less in heath. Isodar analysis also revealed that although forest was quantitatively better than heath and equivalent to woodland it was qualitatively poorer than either habitat. Heath had a higher density of understorey than woodland and woodland having a higher density of understorey than forest giving crossover population regulation. When the increasing and declining phase of the irruption were analysed separately, no habitat was quantitatively superior to any other during either phase. The lack of switching in preference between habitats from the increasing to the declining phase of the irruption and the virtual absence of any dispersal by adults, does not support the reciprocating dispersal hypothesis.     

Ontogenetic phenotypic plasticity during the reproductive phase in Arabidopsis thaliana (Brassicaceae)

While phenotypic plasticity has been the focus of much research and debate in the recent ecological and evolutionary literature, the developmental nature of the phenomenon has been mostly overlooked. A developmental perspective must ultimately be an integral part of our understanding of how organisms cope with heterogeneous environments. In this paper I use the rapid cycling Arabidopsis thaliana to address the following questions concerning developmental plasticity. (1) Are there genetic and/or environmental differences in parameters describing ontogenetic trajectories? (2) Is ontogenetic variation produced by differences in genotypes and/or environments for two crucial traits of the reproductive phase of the life cycle, stem elongation and flower production? (3) Is there ontogenetic variability for the correlation between the two characters? I found genetic variation, plasticity, and variation for plasticity affecting at least some of the growth parameters, indicating potential for evolution via heterochronic shifts in ontogenetic trajectories. Within-population differences among families are determined before the onset of the reproductive phase, while among-population variation is the result of divergence during the reproductive phase of the ontogeny. Finally, the ontogenetic profiles of character correlations are very distinct between the ecologically meaningful categories of early- and late-flowering “ecotypes” in this species, and show susceptibility to environmental change.     

Guild‐specific shifts in visitation rates of frugivores with habitat loss and plant invasion

Habitat loss and plant invasions are two major drivers of global change in subtropical and tropical ecosystems. Both lead to a loss of biodiversity and alter species interactions, which may imperil vital ecosystem processes such as seed dispersal by frugivores. Reponses of frugivores to disturbance are often linked to their specialization on certain habitats or resources. Yet, it is poorly understood how habitat loss and plant invasion structure interactions between plants and different habitat or feeding guilds. Here we investigated whether visitation rates of frugivores change guild‐specifically with increasing habitat loss and invasion level in a heterogeneous subtropical landscape. In 756 h of observations, we recorded 1446 plant–frugivore interactions among 18 plant species and 42 avian frugivore species. Visitation rates of forest specialists decreased with increasing habitat loss, but not with changes in invasion level. In contrast forest generalists and forest visitors were unaffected by either driver. Similarly, obligate frugivores that overall showed a generalized fruit choice were unaffected by habitat loss and changes in invasion level. Contrary, visitation rates of specialized partial and opportunistic frugivores decreased with higher invasion level. Importantly, the negative effect of plant invasion on partial frugivores was more pronounced as habitat loss in the same study site increased, indicating a synergistic effect of the two drivers. The implications of our study are twofold: first, frugivores respond guild‐specifically to habitat loss and plant invasion. Thereby forest dependency is mainly related to habitat loss, and degree of frugivory mainly related to plant invasion. Forest generalists and obligate frugivores in turn may play a key‐role for forest regeneration in disturbed forest landscapes. Second, particularly frugivores with a specialized fruit choice may be threatened by synergistic effects between habitat loss and plant invasion.     

Synergistic effects of climate and land‐use change influence broad‐scale avian population declines

Climate and land‐use changes are expected to be the primary drivers of future global biodiversity loss. Although theory suggests that these factors impact species synergistically, past studies have either focused on only one in isolation or have substituted space for time, which often results in confounding between drivers. Tests of synergistic effects require congruent time series on animal populations, climate change and land‐use change replicated across landscapes that span the gradient of correlations between the drivers of change. Using a unique time series of high‐resolution climate (measured as temperature and precipitation) and land‐use change (measured as forest change) data, we show that these drivers of global change act synergistically to influence forest bird population declines over 29 years in the Pacific Northwest of the United States. Nearly half of the species examined had declined over this time. Populations declined most in response to loss of early seral and mature forest, with responses to loss of early seral forest amplified in landscapes that had warmed over time. In addition, birds declined more in response to loss of mature forest in areas that had dried over time. Climate change did not appear to impact populations in landscapes with limited habitat loss, except when those landscapes were initially warmer than the average landscape. Our results provide some of the first empirical evidence of synergistic effects of climate and land‐use change on animal population dynamics, suggesting accelerated loss of biodiversity in areas under pressure from multiple global change drivers. Furthermore, our findings suggest strong spatial variability in the impacts of climate change and highlight the need for future studies to evaluate multiple drivers simultaneously to avoid potential misattribution of effects.     

Conserving forest insect biodiversity requires the protection of key habitat features

Loss of insect biodiversity is widespread, and in forests habitat loss is one of the major drivers responsible. Integrative forest management must consider the preservation and promotion of key habitat features that provide essential microhabitats and resources to conserve biodiversity alongside ecosystem functions and services.     

森林碳库特征及驱动因子分析研究进展

森林碳库作为全球碳库的重要组成部分,在区域以及全球碳循环中发挥重要作用。森林生态系统有机碳库主要由3部分组成:活植物碳库、土壤有机质碳库和死植物体碳库。各碳库时空差异很大,使研究森林碳储存机制存在很大的不确定性。在全球或者区域尺度上,森林生物量(与森林碳储量密切相关)呈现出清晰的分布格局,但对于这些格局的驱动因子与地上生物量的相关关系和尺度外推程度尚有很大的争议。分别讨论了气候、土壤、地形和生物因子对地上生物量的影响;而后,从各生态因子与地上生物量之间的直接或者间接关系入手,分析了各因子与生物量之间的交互作用,认为目前运用相同的处理方式来研究环境因子和生物因子对森林生物量的影响是不合适的。文章最后介绍两种新的研究方法:层次模型和生境分类,以期用来重新评估生态因子对森林生物量的影响,有助于更准确的了解森林碳储存机制。     

Leaf shape and size track habitat transitions across forest–grassland boundaries in the grass family (Poaceae)

Grass leaf shape is a strong indicator of their habitat with linear leaves predominating in open areas and ovate leaves distinguishing forest‐associated grasses. This pattern among extant species suggests that ancestral shifts between forest and open habitats may have coincided with changes in leaf shape or size. We tested relationships between habitat, climate, photosynthetic pathway, and leaf shape and size in a phylogenetic framework to evaluate drivers of leaf shape and size variation over the evolutionary history of the family. We also estimated the ancestral habitat of Poaceae and tested whether forest margins served as transitional zones for shifts between forests and grasslands. We found that grass leaf shape is converging toward different shape optima in the forest understory, forest margins, and open habitats. Leaf size also varies with habitat. Grasses have smaller leaves in open and drier areas, and in areas with high solar irradiance. Direct transitions between linear and ovate leaves are rare as are direct shifts between forest and open habitats. The most likely ancestral habitat of the family was the forest understory and forest margins along with an intermediate leaf shape served as important transitional habitat and morphology, respectively, for subsequent shifts across forest–grassland biome boundaries.     

Response of a small felid of conservation concern to habitat fragmentation

Habitat loss and fragmentation are major drivers of biodiversity loss. A key question, particularly relevant to carnivore conservation, is to which extent species are able to survive in human-modified landscapes. Currently, conservationists are concerned about the impact habitat fragmentation may have on the long-term persistence of the forest-dwelling guiña (Leopardus guigna), given the increasingly modified landscapes in which they live. Here we evaluate the effect habitat cover, fragmentation and anthropogenic pressure have on the occupancy probability for guiñas in privately-owned forest fragments. We collected camera-trap data from 100 temperate rainforest sites in Chile and used single-season occupancy modeling to evaluate the influence of 13 parameters of landscape structure/anthropogenic pressure and four parameters of detection probability on the ocurrence of guiñas. The camera-trap survey data comprised 4168 camera-trap days and 112 independent records of guiñas. Surprisingly, fragmented (defined as having a high perimeter-to-area ratio) and moderately sized habitat patches best predicted site occupancy. Occupancy also increased where habitat patches were closer to continuous forest and nearer to buildings. Our results imply that guiñas can benefit from a high degree of edge type habitats in fragmented landscapes, capable of adapting to habitat fragmentation in the proximity to large continuous forest patches. This suggests that guiñas have a broader niche than previously believed. Additionally, the guiña is tolerant of human infrastructure. Further research is required to identify potential ecological traps, long-term source-sink dynamics, and the habitat loss/fragmentation threshold beyond which guiña populations are no longer viable.     

Wildlife Recovery During Tropical Forest Succession: Assessing Ecological Drivers of Community Change

Despite the high proportion of secondary forests in the tropics, their conservation value remains poorly understood, particularly with regard to animals. Most theoretical studies of succession have focused on plants, linking life history trade‐offs to well‐known patterns of community change. However, the same trade‐offs proposed for plants should apply to animals, and indeed, animal studies show a change in community dominance from habitat generalist to forest specialist species during succession. Focusing on the diverse terrestrial small mammals of the endangered Atlantic Forest, we assessed which ecological drivers (habitat structure and food availability) affect community changes during succession. If the change in community dominance is driven by trade‐offs between productivity and efficiency, it should be mainly associated with a decrease in food availability. As expected, from younger to older forest, habitat generalists decreased in richness and total abundance, concurrent with a decrease in arthropod biomass. By contrast, the increase in richness and total abundance of forest specialists was not clearly supported by the data; however, this group was not affected by food availability. These results are congruent with a trade‐off between competitive ability and ability to use abundant resources, and indicate that the major community change during succession involves habitat generalists. Secondary forests may thus be valuable for conservation, at least where habitat loss and fragmentation are not high, and old growth forest is available.     

Trophic niche and habitat shifts of sympatric Gerreidae

The diet and mouth growth rates of three Gerreidae species (Eugerres brasilianus, Eucinostomus melanopterus and Diapterus rhombeus) were assessed at different ontogenetic phases (juveniles, sub‐adults and adults) in order to detect allometric growth, and whether they are related to habitat and seasonal changes in the Goiana Estuary, north‐east Brazil. The importance of each prey for each ontogenetic phase was described using the index of relative importance. The three species showed seasonal ontogenetic shifts in diet and allometric growth of mouth morphology. They also had an exclusively zoobenthic diet, comprising mainly Polychaeta, Copepoda, Ostracoda, Gastropoda and Bivalvia. Mouth development showed a possible influence on diet changes for E. melanopterus. Significant interactions (P < 0·01) were detected among seasons, areas and ontogenetic phases for the most important prey for E. brasilianus and E. melanopterus. Diet overlaps are evidence of intra and interspecific competition among gerreids for specific prey. A conceptual model of the competition and seasonal diet shifts among ontogenetic phases of gerreids is given. The sediment ingested due to the feeding mechanisms of Gerreidae species could also partially explain the ingestion of synthetic items observed for all ontogenetic phases, which indicates one of a myriad effects of human activities (e.g. artisanal fishery) in this estuary.     

Intrinsic and extrinsic drivers of succession: effects of habitat age and season on an aquatic insect community

1. Classic studies of succession, largely dominated by plant community studies, focus on intrinsic drivers of change in community composition, such as inter‐specific competition and changes to the abiotic environment. They often do not consider extrinsic drivers of colonisation, such as seasonal phenology, that can affect community change. 2. Both intrinsic and extrinsic drivers of succession for dipteran communities that occupy ephemeral pools, such as those in artificial containers were investigated. By initiating communities at different times in the season and following them over time, the relative importance of intrinsic (i.e. habitat age) versus extrinsic (i.e. seasonal phenology) drivers of succession were compared. 3. Water‐filled artificial containers were placed in a deciduous forest with 20 containers initiated in each of 3 months. Containers were sampled weekly to assess community composition. Repeated‐measures mixed‐effects analysis of community correspondence analysis (CA) scores enabled us to partition intrinsic and extrinsic effects on succession. Covariates of temperature and precipitation were also tested. 4. Community trajectories (as defined by CA) differed significantly with habitat age and season, indicating that both intrinsic and extrinsic effects influence succession patterns. Comparisons of Akaike Information Criteria corrected for sample sizes (AICcs) showed that habitat age was more important than season for species composition. Temperature and precipitation did not explain composition changes beyond those explained by habitat age and season. 5. Quantification of relative strengths of intrinsic and extrinsic effects on succession in dipteran and other ephemeral communities enables us to disentangle processes that must be understood for predicting changes in community composition.     

Thresholds of riparian forest use by terrestrial mammals in a fragmented Amazonian deforestation frontier

Species persistence in fragmented landscapes is intimately related to the quality, structure, and context of remaining habitat remnants. Riparian vegetation is legally protected within private landholdings in Brazil, so we quantitatively assessed occupancy patterns of terrestrial mammals in these remnants, examining under which circumstances different species effectively use them. We selected 38 riparian forest patches and five comparable riparian sites within continuous forest, at which we installed four to five camera-traps per site (199 camera-trap stations). Terrestrial mammal assemblages were sampled for 60 days per station during the dry seasons of 2013 and 2014. We modelled species occupancy and detection probabilities within riparian forest remnants, and examined the effects of patch size, habitat quality, and landscape structure on occupancy probabilities. We then scaled-up modelled occupancies to all 1915 riparian patches throughout the study region to identify which remnants retain the greatest potential to work as habitat for terrestrial vertebrates. Of the ten species for which occupancy was modelled, six responded to forest quality (remnant degradation, cattle intrusion, palm aggregations, and understorey density) or structure (remnant width, isolation, length, and area of the patch from which it originates). Patch suitability was lower considering habitat quality than landscape structure, and virtually all riparian remnants were unsuitable to maintain a high occupancy probability for all species that responded to forest patch quality or structure. Beyond safeguarding legal compliance concerning riparian remnant amount, ensuring terrestrial vertebrate persistence in fragmented landscapes will require curbing the drivers of forest degradation within private landholdings.     

Conservation status of Asian elephants: the influence of habitat and governance

Understanding the drivers of Asian elephant (Elephas maximus) abundance and distribution is critical for effective elephant conservation, yet no such analysis exists despite decades of assessments and planning. We explored the influence of habitat- and governance-related drivers on elephant abundance across the 13 Asian elephant range countries. We tested competing statistical models by integrating a binary index of elephant abundance (IEA) derived from expert knowledge with different predictor variables including habitat, human population, socioeconomics, and governance data. We employed logistic regression and model-averaging techniques based on Akaike’s Information Criterion to identify the best-performing subset among our 12 candidate models and used the model-averaged results to predict IEA in other areas in Asia where elephant population status is currently unknown. Forest area was our strongest single predictor variable. The best performing model, however, featured a combination of habitat and governance variables including forest area, level of corruption, proportional mix of forest and agriculture, and total agricultural area. Our predictive model identified five areas with medium–high to high probability to have populations with >150 elephants, which we believe should be surveyed to assess their status. Asian elephants persist in areas that are dominated by forest but also seem to benefit from a mix of agricultural activities. A relatively low level of corruption is also important and we conclude that effective governance is essential for maintaining Asian elephant populations. Asian elephant populations cannot be maintained solely in protected areas but need well-managed, mixed-use landscapes where people and elephants coexist.     

Ocean acidification boosts larval fish development but reduces the window of opportunity for successful settlement

Locating appropriate settlement habitat is a crucial step in the life cycle of most benthic marine animals. In marine fish, this step involves the use of multiple senses, including audition, olfaction and vision. To date, most investigations of larval fish audition focus on the hearing thresholds to various frequencies of sounds without testing an ecological response to such sounds. Identifying responses to biologically relevant sounds at the development stage in which orientation is most relevant is fundamental. We tested for the existence of ontogenetic windows of reception to sounds that could act as orientation cues with a focus on vulnerability to alteration by human impacts. Here we show that larvae of a catadromous fish species (barramundi, Lates calcarifer) were attracted towards sounds from settlement habitat during a surprisingly short ontogenetic window of approximately 3 days. Yet, this auditory preference was reversed in larvae reared under end-of-century levels of elevated CO₂, such that larvae are repelled from cues of settlement habitat. These future conditions also reduced the swimming speeds and heightened the anxiety levels of barramundi. Unexpectedly, an acceleration of development and onset of metamorphosis caused by elevated CO₂ were not accompanied by the earlier onset of attraction towards habitat sounds. This mismatch between ontogenetic development and the timing of orientation behaviour may reduce the ability of larvae to locate habitat or lead to settlement in unsuitable habitats. The misinterpretation of key orientation cues can have implications for population replenishment, which are only exacerbated when ontogenetic development decouples from the specific behaviours required for location of settlement habitats.     

Temporal consistency of ontogenetic shifts in habitat use by coral reef fishes in the northernmost coral ecosystem in the world (Kudaka Island, Japan)

The prevalence of major habitat shifts in tropical fishes between juvenile and adult stages (ontogenetic shifts) in one of the northernmost coral reefs in the world (Kudaka Island, Japan) is given. The comparative analysis of spatial distribution of juveniles v . adults highlighted four ontogenetic patterns: no change in habitat use between juveniles and adults (five species), a decrease in the number of habitats used by adults compared to juveniles (three species), an increase in the number of habitats used during the adult stage (four species) and use of nursery areas by juveniles followed by extensive movements to different adult habitats (three species). The comparative analysis of fish distribution over time ( i.e. during three consecutive settlement months) showed that 84% of species had temporal consistency in ontogenetic patterns of habitat use.