Spatial and temporal variation in fish community structure of a marine embayment in Zanzibar,Tanzania

Spatial and temporal variation in the fish community structure were studied in a tropical non-estuarine embayment in Chwaka Bay, Zanzibar (Tanzania). Fish samples were collected bi-monthly (at each spring low tide) for 1 year (November 2001–October 2002) from a range of bay habitats ranging from mangroves deep inside the bay to seagrass beds close to the mouth of the bay. Additionally, environmental variables were examined to determine their relationship with the fish community structure. Being a non-estuarine embayment, the environmental variables as well as the fish community structure in each habitat remained relatively constant for most part of the year; however, a marked decline was observed during the rainy period (April–May). Significant variations in fish community variables (density, biomass and species richness) and in water temperature and salinity were observed during the rainy season in all habitats, with larger changes in the mangrove and mud/sand flats habitats than in the seagrass beds. Seasonal variations in water clarity and dissolved oxygen were not significant, though. Many species disappeared from the mangrove and mud/sand flats habitats during the rainy season and those which persisted showed a remarkable decrease in density. Moreover, the results indicate that mangroves were the preferred settling habitats for Gerres filamentosus, Gerres oyena, Lethrinus lentjan and Monodactylus argenteus, especially during the dry period (December–February) before the rainy season. This observation is contrary to what has been reported from some other tropical regions where greater abundance and species richness was observed during the rainy season. A significant relationship was found between density of fish and temperature, salinity and turbidity. Since salinity was the most conspicuously changing environmental variable with seasons, we propose that salinity, alone or in combination with low visibility and temperature, was probably the most important environmental factor structuring the fish assemblage in the mangrove and mud/sand flats habitats, particularly during the rainy season. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. A. Cambray     

Plasmodium vivax congenital malaria in an area of very low endemicity in Guatemala: implications for clinical and epidemiological surveillance in a malaria elimination context

Background

To document the status of imported malaria infections and estimate the costs of treating of patients hospitalized with the diagnosis of imported malaria in the Slovak Republic during 2003 to 2008.

Case study

Calculating and comparing the direct and indirect costs of treatment of patients diagnosed with imported malaria (ICD-10: B50 - B54) who used and not used chemoprophylaxis. The target sample included 19 patients diagnosed with imported malaria from 2003 to 2008, with 11 whose treatment did not include chemoprophylaxis and eight whose treatment did.

Results

The mean direct cost of malaria treatment for patients without chemoprophylaxis was 1,776.0 EUR, and the mean indirect cost 524.2 EUR. In patients with chemoprophylaxis the mean direct cost was 405.6 EUR, and the mean indirect cost 257.4 EUR.

Conclusions

The analysis confirmed statistically-significant differences between the direct and indirect costs of treatment with and without chemoprophylaxis for patients with imported malaria.     

Spatial simulation of malaria transmission and its control by malaria transmission blocking vaccination

A simple, visual representation of spatial aspects of malaria transmission in successive snap-shots in time, is presented. The spatial components of the simulation involve (i) the identification of mosquito vector breeding sites of defined shape and area, (ii) the identification of a zone of malaria transmission determined by the shapes and areas of the vector breeding sites and the distance from these sites that the mosquitoes disperse, (iii) a human population dispersed in relation to the malaria transmission zone, (iv) perimeters around each individual human within which his or her infection can be transmitted by the local vector mosquitoes. The intensity of transmission within a malaria transmission zone is given by a number which is the number of new cases of malaria that each existing case will distribute through the human population within the duration of an infection. The simulation has been used here to examine the effects of vaccination against malaria transmission. Different levels of vaccine coverage are represented under endemic and epidemic malaria. The consequences of full or partial coverage of a zone of malaria transmission are also examined. The results are numerically compatible with the predictions of previous simple mathematical simulations of malaria transmission and interventions. The present simulation allows the nature of malaria transmission and the effects of interventions to be communicated easily and directly to an audience. It could have practical value in discussions of malaria control strategies with health planners.     

Malaria transmission risk variations derived from different agricultural practices in an irrigated area of northern Tanzania

Malaria vector Anopheles and other mosquitoes (Diptera: Culicidae) were monitored for 12 months during 1994-95 in villages of Lower Moshi irrigation area (37 degrees 20' E, 3 degrees 21' S; approximately 700 m a.s.l.) south of Mount Kilimanjaro in northern Tanzania. Adult mosquito populations were sampled fortnightly by five methods: human bait collection indoors (18.00-06.00 hours) and outdoors (18.00-24.00 hours); from daytime resting-sites indoors and outdoors; by CDC light-traps over sleepers. Anopheles densities and rates of survival, anthropophily and malaria infection were compared between three villages representing different agro-ecosystems: irrigated sugarcane plantation; smallholder rice irrigation scheme, and savannah with subsistence crops. Respective study villages were Mvuleni (population 2200), Chekereni (population 3200) and Kisangasangeni (population approximately/= 1000), at least 7 km apart. Anopheles arabiensis Patton was found to be the principal malaria vector throughout the study area, with An. funestus Giles sensu lato of secondary importance in the sugarcane and savannah villages. Irrigated sugarcane cultivation resulted in water pooling, but this did not produce more vectors. Anopheles arabiensis densities averaged four-fold higher in the ricefield village, although their human blood-index was significantly less (48%) than in the sugarcane (68%) or savannah (66%) villages, despite similar proportions of humans and cows (ratio 1:1.1-1.4) as the main hosts at all sites. Parous rates, duration of the gonotrophic cycle and survival rates of An. arabiensis were similar in villages of all three agro-ecosystems. The potential risk of malaria, based on measurements of vectorial capacity of An. arabiensis and An.funestus combined, was four-fold higher in the ricefield village than in the sugarcane or savannah villages nearby. However, the more realistic estimate of malaria risk, based on entomological inoculation rates, indicated that exposure to infective vectors was 61-68% less for people in the ricefield village, due to the much lower sporozoite rate in An. arabiensis (ricefield 0.01%, sugarcane 0.1%, savannah 0.12%). This contrast was attributed to better socio-economic conditions of rice farmers, facilitating relatively more use of antimalarials and bednets for their families. Our findings show that, for a combination of reasons, the malaria challenge is lower for villagers associated with an irrigated rice-growing scheme (despite greater malaria vector potential), than for adjacent communities with other agro-ecosystems bringing less socio-economic benefits to health. This encourages the development of agro-irrigation schemes in African savannahs, provided that residents have ready access to antimalaria materials (i.e. effective antimalaria drugs and insecticidal bednets) that they may better afford for protection against the greater vectorial capacity of An. arabiensis from the ricefield agro-ecosystem.     

玉龙雪山地区地表三维温度场时空变化分析

玉龙雪山属于海洋型冰川,对全球气候变化敏感,具有重要的生态研究价值。为了获取玉龙雪山地区的地表温度变化情况,提出了一种基于地表三维温度场的定量分析方法。首先,采用高分辨率立体测绘卫星影像构建数字表面模型,作为三维底图参考,并利用多时序热红外卫星影像数据反演地表温度场模型,提供地表温度变化依据;然后,在统一参考坐标系下将数字表面模型和多时序地表温度场模型套合,准确地分析地表温度时空变化情况。试验利用1987年至2018年间同一季节的Landsat卫星遥感影像反演地表温度,结合资源三号卫星立体影像构建的数字表面模型,并采用四阶温度区间分析多时序范围内玉龙雪山地区的地表温度变化情况。试验结果表明玉龙雪山低温区和次低温区面积逐渐减小,减小速度分别为2.096 km²/a和2.662 km²/a,中温区和暖温区面积逐渐增大,增大速度分别为2.902 km²/a和1.703km²/a,玉龙雪山地区的地表温度呈现整体上升的趋势,为全球生态环境变化提供参考。     

Widespread omnivory and low temporal and spatial variation in the diet of fishes in a hydrologically variable northern Australian river

This article examines the trophic ecology of freshwater fishes (22 species in 15 families) in a wet and dry tropical Australian river of high intra‐annual and interannual hydrological variability. Seven major trophic groups were identified by cluster analysis; however, four food items (filamentous algae, chironomid larvae, Trichoptera larvae and Ephemeroptera nymphs) comprised almost half of the average diet of all species. The influence of species, fish size, spatial effects and temporal effects on food use was investigated using redundancy analysis. Size, time and space accounted for little of the perceived variation. Ontogenetic changes in diet were minor and limited to a few large species. Spatial variation in trophic composition of the fish assemblages reflected the effects of the Burdekin Falls and dam, a major geographic barrier, on species distributions. Little spatial variation in diet was detected after accounting for this biogeographical effect. Temporal variations in flow, although marked, had little effect on variations in fish diet composition due to the low temporal diversity of food resources in physically monotonous sand and gravel channels. Species identity accounted for<50% of the observed variation in food choice; omnivory and generalism were pronounced. The aquatic food web of the Burdekin River appears simple, supported largely by autochthonous production (filamentous and benthic microalgae, and to some extent, aquatic macrophytes). Allochthonous food resources appear to be unimportant. The generalist feeding strategies, widespread omnivory and absence of pronounced trophic segregation reported here for Burdekin River fishes may be common to variable and intermittent rivers of subtropical and tropical northern Australia with similar fish communities and may be a general feature of rivers of low habitat diversity and characterized by flow regimes that vary greatly both within and between years.     

秦岭南北近地面水汽时空变化特征

利用秦岭南北地区47个气象站1960-2011年的观测资料,借助Spline空间插值、Pettitt突变点检验、Morlet小波分析等方法对水汽的空间分布、时空演变、突变特征和周期特征及其可能影响因素进行分析.结果表明:①秦岭南北近地面水汽呈南高北低、东高西低的空间分布格局,各子区水汽由南向北递减,季节分布规律与年尺度基本一致,以夏季最大,冬季最小.②近52年平均水汽压呈上升趋势,秦岭南坡和汉水流域上升速率较快,巴巫谷地呈下降趋势;③53％的站点冬季水汽压发生突变,集中分布于秦岭以南的部分地区,突变集中发生在1985-1988年间,与冬季气温突变时间一致,其余季节突变现象不明显.④水汽在21a时间尺度下经历了4次干湿交替变化,各季节水汽变化规律与年尺度基本一致,未来一段时间该地区仍然处于相对干旱状态.⑤水汽压受到包括气温、风速、日照在内的多种气象因素的综合作用,影响力大小排序为气温＞降水量＞日照时数＞相对湿度.     

Spatial and temporal patterns of phenotypic variation in a Neotropical frog

Aim Studies of the spatial and temporal patterns of phenotypic diversity help to elucidate the fine‐scale evolutionary and ecological mechanisms underlying geographical differentiation. The red‐eyed tree frog, Agalychnis callidryas, is a widespread Neotropical frog that exhibits a broad range of polymorphism of coloration and flank‐stripe pattern. The goal of this study was two‐fold: first, to investigate the stability of polymorphisms over a 38‐year period; and second, to evaluate biogeographical hypotheses of diversification between lower Central American populations through quantification of phenotypic diversity on a fine geographical scale. Location This study was conducted at 12 sites across four biogeographical regions in Costa Rica and Panama. Methods We quantified colour, categorized flank‐stripe pattern from digital photos taken during field sampling, and measured body size for each individual. We compared the regional frequency of each flank‐stripe pattern in 2005 with the frequency distribution from a previous study of the same sites in 1967 using logistic regression analyses. We determined the geographical signal of leg coloration by employing linear discriminant function analyses to generate a classification matrix based on covariance similarities, and by comparison of the average hue values within and between regions. Results We found a temporal shift in the frequency of flank‐stripe patterns in three of four regions over 38 years. Based on measures of leg coloration, the frequency distribution of flank‐stripe patterns and body size, we conclude that A. callidryas populations are easily distinguishable at a regional scale. Main conclusions Agalychnis callidryas exhibits regional differentiation in all phenotypic traits measured in this study, supporting the role of three major biogeographical barriers to gene exchange. We found evidence of a putative contact zone between polytypic regions in Costa Rica. In addition, we report temporal instability of the relative frequency of stripe patterns located on the flanks. The ecological and evolutionary mechanisms that may underlie this variation include sexual selection and avoidance of predators.     

Spatial and temporal variation of consanguinity in Italy

Genetic structure of Italian population is described as regards the level of inbreeding measured through the frequency of consanguineous marriages during a long period of time in different geographical areas. Analyses of spatial and temporal variation of the different types of marriages between close biological relatives allow us to point out the major factors responsible for the availability of cousins to marry within a specific area: population size, fertility, mortality and migration rates and, in general the demographic structure, changing over time and greatly affected by variation in the socio-economic structure. A deepened analysis, within each consanguinity degree, of the various pedigrees differing in the sex of ancestors, give information on the type of migration (patrilocal or matrilocal) occurred in various parts of Italy, as probable consequence of differential type of economy (for instance: pastoral or agricultural in Sardinia). Moreover, a cultural factor of varying intensity could be recognized in the greater observed frequency of marriages in which the nearest ancestors are females, interpreted as a tendency to maintain family ties by mothers of consanguineous mates.     

Infection dynamics of endemic malaria in a wild bird population: parasite species-dependent drivers of spatial and temporal variation in transmission rates

1.?Investigating the ecological context in which host-parasite interactions occur and the roles of biotic and abiotic factors in forcing infection dynamics is essential to understanding disease transmission, spread and maintenance. 2.?Despite their prominence as model host-pathogen systems, the relative influence of environmental heterogeneity and host characteristics in influencing the infection dynamics of avian blood parasites has rarely been assessed in the wild, particularly at a within-population scale. 3.?We used a novel multievent modelling framework (an extension of multistate mark-recapture modelling) that allows for uncertainty in disease state, to estimate transmission parameters and assess variation in the infection dynamics of avian malaria in a large, longitudinally sampled data set of breeding blue tits infected with two divergent species of Plasmodium parasites. 4.?We found striking temporal and spatial heterogeneity in the disease incidence rate and the likelihood of recovery within this single population and demonstrate marked differences in the relative influence of environmental and host factors in forcing the infection dynamics of the two Plasmodium species. 5.?Proximity to a permanent water source greatly influenced the transmission rates of P.?circumflexum, but not of P.?relictum, suggesting that these parasites are transmitted by different vectors. 6.?Host characteristics (age/sex) were found to influence infection rates but not recovery rates, and their influence on infection rates was also dependent on parasite species: P.?relictum infection rates varied with host age, whilst P.?circumflexum infection rates varied with host sex. 7.?Our analyses reveal that transmission of endemic avian malaria is a result of complex interactions between biotic and abiotic components that can operate on small spatial scales and demonstrate that knowledge of the drivers of spatial and temporal heterogeneity in disease transmission will be crucial for developing accurate epidemiological models and a thorough understanding of the evolutionary implications of pathogens.     

Spatial and temporal variation in lightning ignitions in Sweden

Abstract. Analysis of fire statistics revealed that there are steep gradients in the distribution of lightning-caused fire ignitions in Sweden. The highest ignition density was found in the southeastern provinces of Kalmar and Östergötland, ca. 0.23/10 000 ha/yr. From there, densities generally declined both to the north and to the west, with a density averaging ca. 0.05 in the six northernmost provinces, and an equally low density in the southwestern province of Halland. For both northern and southern Sweden, lightning ignitions peaked in early July, but in the south the season for ignitions started 2–3 weeks earlier and ended 2–3 weeks later. The geographical gradients in lightning ignition density correspond to the average precipitation during summer. The patterns of lightning ignition densities may also indicate gradients in natural fire frequencies. This hypothesis is supported by the distribution of certain fire-adapted plant species.     

Congenital malaria with atypical presentation: A case report from low transmission area in India

Drug resistant malaria was a major factor contributing to the failure of a worldwide campaign to eradicate malaria in the last century, and now threatens the large investment being made by the global community in the rollout of effective new drug combinations to replace failed drugs. Four related papers in this issue of Malaria Journal make the case for creating the World Antimalarial Resistance Network (WARN), which will consist of four linked open-access global databases containing clinical, in vitro, molecular and pharmacological data, and networks of reference laboratories that will support these databases and related surveillance activities. WARN will serve as a public resource to guide antimalarial drug treatment and prevention policies and to help confirm and characterize the new emergence of new resistance to antimalarial drugs and to contain its spread.     

Spatial and temporal variation of microbial respiration rates in a blackwater stream

1. The extent of spatial and temporal variation of microbial respiration was determined in a first-order, sand-bottomed, blackwater stream on the coastal plain of south-eastern Virginia, U.S.A.
2. Annual mean respiration rates (as g O₂ m^–3 h^–1) differed significantly among substrata: leaf litter, 12.9; woody debris, 2.4; surface sediment, 0.8; hyporheic sediment, 0.4; water column, 0.003. Rates associated with wood were higher than those with leaves when expressed per unit surface area.
3. Highest respiration rates on leaves, wood and in the water column occurred during the summer, whereas rates in the sediments were greatest during the late autumn and winter. Water temperature, as well as particulate organic matter and nitrogen content of the substrata, was correlated positively with respiration rates.
4. A stepwise multiple regression showed that temperature and nitrogen content together explained 88% of the variation in respiration rates of leaves and wood. In contrast, particulate organic matter content and nitrogen content explained 89–90% of the variation in respiration in the sediments. Although water temperature was a significant factor in the sediment multiple regressions, its addition as an independent variable improved the regression models only slightly.
5. Annual mean respiration in the stream channel, based on the proportional amount of respiration occurring associated with each type of substratum during each month, was 1.1 kg O₂ m^–2 yr^–1. Seventy per cent of respiration in the stream occurred in the hyporheic zone, 8–13% occurred in the surface sediment, leaf litter or woody debris, and < 1% occurred in the water column. Approximately 16% of total detritus, or 40% of non-woody detritus, stored in the stream during the year was lost to microbial respiration.     

Spatial and temporal variation of microbial respiration rates in a blackwater stream

1. The extent of spatial and temporal variation of microbial respiration was determined in a first-order, sand-bottomed, blackwater stream on the coastal plain of south-eastern Virginia, U.S.A.
2. Annual mean respiration rates (as g O₂ m^–3 h^–1) differed significantly among substrata: leaf litter, 12.9; woody debris, 2.4; surface sediment, 0.8; hyporheic sediment, 0.4; water column, 0.003. Rates associated with wood were higher than those with leaves when expressed per unit surface area.
3. Highest respiration rates on leaves, wood and in the water column occurred during the summer, whereas rates in the sediments were greatest during the late autumn and winter. Water temperature, as well as particulate organic matter and nitrogen content of the substrata, was correlated positively with respiration rates.
4. A stepwise multiple regression showed that temperature and nitrogen content together explained 88% of the variation in respiration rates of leaves and wood. In contrast, particulate organic matter content and nitrogen content explained 89–90% of the variation in respiration in the sediments. Although water temperature was a significant factor in the sediment multiple regressions, its addition as an independent variable improved the regression models only slightly.
5. Annual mean respiration in the stream channel, based on the proportional amount of respiration occurring associated with each type of substratum during each month, was 1.1 kg O₂ m^–2 yr^–1. Seventy per cent of respiration in the stream occurred in the hyporheic zone, 8–13% occurred in the surface sediment, leaf litter or woody debris, and < 1% occurred in the water column. Approximately 16% of total detritus, or 40% of non-woody detritus, stored in the stream during the year was lost to microbial respiration.     

Vectors and malaria transmission in a gem mining area in Sri Lanka.

Anopheline vectors of malaria were studied in the Kaluganga gem mining area in the dry zone of central Sri Lanka. Adult mosquitoes were collected using cattle-baited huts and nets, pyrethrum spray sheets, window exit traps and light traps and partial and full-night human landing collections over a period of 17 mo. The collections produced a total of 13,591 anophelines belonging to 14 species. Using ELISA for circumsporozoite proteins of Plasmodium vivax and P. falciparum, Anopheles culicifacies, An. subpictus and An. varuna were incriminated as malaria vectors. For these species, estimated entomological inoculation rates were 5.9, 5.7, and 6.7 infective bites per person per year, respectively. An. culicifacies and An. subpictus show endophagic behavior, while An. varuna were exophagic. Mosquito larval surveys indicated that the gem pits, when filled with water, contributed 60% of the larvae of the three vector species. Parasitological data were collected by two mobile malaria clinics and by hospitals. The incidence rates of fever per 1,000 person-years with P. vivax and P. falciparum were 122.8 and 26.1 respectively, with a significantly higher rate in males over 15 years of age than in females of that age. Changes in the environment due to gem mining may have caused the emergence of An. subpictus and An. varuna as significant malaria vectors. The conventional view of An. culicifacies being the main vector of malaria in Sri Lanka needs to be reconsidered when planning the vector control programs in this study area. Due to migration of malaria patients, there is a likelihood the disease could be spread to other parts of the island. Therefore, action should be taken to eliminate these pits as breeding sites.     

Plasmodium falciparum malaria endemicity in Indonesia in 2010

Background

Malaria control programs require a detailed understanding of the contemporary spatial distribution of infection risk to efficiently allocate resources. We used model based geostatistics (MBG) techniques to generate a contemporary map of Plasmodium falciparum malaria risk in Indonesia in 2010.

Methods

Plasmodium falciparum Annual Parasite Incidence (PfAPI) data (2006–2008) were used to map limits of P. falciparum transmission. A total of 2,581 community blood surveys of P. falciparum parasite rate (PfPR) were identified (1985–2009). After quality control, 2,516 were included into a national database of age-standardized 2–10 year old PfPR data (PfPR_2–10) for endemicity mapping. A Bayesian MBG procedure was used to create a predicted surface of PfPR_2–10 endemicity with uncertainty estimates. Population at risk estimates were derived with reference to a 2010 human population count surface.

Results

We estimate 132.8 million people in Indonesia, lived at risk of P. falciparum transmission in 2010. Of these, 70.3% inhabited areas of unstable transmission and 29.7% in stable transmission. Among those exposed to stable risk, the vast majority were at low risk (93.39%) with the reminder at intermediate (6.6%) and high risk (0.01%). More people in western Indonesia lived in unstable rather than stable transmission zones. In contrast, fewer people in eastern Indonesia lived in unstable versus stable transmission areas.

Conclusion

While further feasibility assessments will be required, the immediate prospects for sustained control are good across much of the archipelago and medium term plans to transition to the pre-elimination phase are not unrealistic for P. falciparum. Endemicity in areas of Papua will clearly present the greatest challenge. This P. falciparum endemicity map allows malaria control agencies and their partners to comprehensively assess the region-specific prospects for reaching pre-elimination, monitor and evaluate the effectiveness of future strategies against this 2010 baseline and ultimately improve their evidence-based malaria control strategies.