Laboratory Simulations of Cyanobacterial Mats of the Alkaline Geochemical Barrier

The goal of this work was to illustrate a possible interaction between the soda continent and the ocean. A laboratory simulation was undertaken of the development of alkaliphilic mat with calcium carbonate and calcium phosphate interlayers in the zone where ocean waters, containing calcium and manganese, come into contact with carbonate- and phosphate-rich alkaline waters. The macrostructure of the layered cyanobacterial mat turned out to be little dependent on the chemical conditions causing sediment formation. The chemical composition of freshly formed mineral interlayers of the mat was found to vary with the medium composition. The mineralogical composition of the sediment is determined by diagenesis conditions in its depth, which can cause mineral phase conversions.     

Impacts of Ocean Acidification on Sediment Processes in Shallow Waters of the Arctic Ocean

Despite the important roles of shallow-water sediments in global biogeochemical cycling, the effects of ocean acidification on sedimentary processes have received relatively little attention. As high-latitude cold waters can absorb more CO₂ and usually have a lower buffering capacity than warmer waters, acidification rates in these areas are faster than those in sub-tropical regions. The present study investigates the effects of ocean acidification on sediment composition, processes and sediment-water fluxes in an Arctic coastal system. Undisturbed sediment cores, exempt of large dwelling organisms, were collected, incubated for a period of 14 days, and subject to a gradient of pCO₂ covering the range of values projected for the end of the century. On five occasions during the experimental period, the sediment cores were isolated for flux measurements (oxygen, alkalinity, dissolved inorganic carbon, ammonium, nitrate, nitrite, phosphate and silicate). At the end of the experimental period, denitrification rates were measured and sediment samples were taken at several depth intervals for solid-phase analyses. Most of the parameters and processes (i.e. mineralization, denitrification) investigated showed no relationship with the overlying seawater pH, suggesting that ocean acidification will have limited impacts on the microbial activity and associated sediment-water fluxes on Arctic shelves, in the absence of active bio-irrigating organisms. Only following a pH decrease of 1 pH unit, not foreseen in the coming 300 years, significant enhancements of calcium carbonate dissolution and anammox rates were observed. Longer-term experiments on different sediment types are still required to confirm the limited impact of ocean acidification on shallow Arctic sediment processes as observed in this study.     

Associations between redox‐sensitive trace metals and microbial communities in a Proterozoic ocean analogue

Constraints on Precambrian ocean chemistry are dependent upon sediment geochemistry. However, diagenesis and metamorphism can destroy primary biosignatures, making it difficult to consider biology when interpreting geochemical data. Modern analogues for ancient ecosystems can be useful tools for identifying how sediment geochemistry records an active biosphere. The Middle Island Sinkhole (MIS) in Lake Huron is an analogue for shallow Proterozoic waters due to its low oxygen water chemistry and microbial communities that exhibit diverse metabolic functions at the sediment–water interface. This study uses sediment trace metal contents and microbial abundances in MIS sediments and an oxygenated Lake Huron control site (LH) to infer mechanisms for trace metal burial. The adsorption of trace metals to Mn‐oxyhydroxides is a critical burial pathway for metals in oxic LH sediments, but not for the MIS mat and sediments, consistent with conventional understanding of Mn cycling. Micronutrient trace metals (e.g., Zn) are associated with organic matter regardless of oxygen and sulfide availability. Although U and V are conventionally considered to be organically complexed in suboxic and anoxic conditions, U and organic covary in oxic LH sediments, and Mn‐oxyhydroxide cycling dominates V deposition in the anoxic MIS sediments. Significant correlations between Mo and organic matter across all redox regimes have major implications for our interpretations of Mo isotope systematics in the geologic record. Finally, while microbial groups vary between the sampling locales (e.g., the cyanobacteria in the MIS microbial mat are not present in LH sediments), LH and MIS ultimately have similar relationships between microbial assemblages and metal burial, making it difficult to link trace metal burial to microbial metabolisms. Together, these results indicate that bulk sediment trace metal composition does not capture microbiological processes; more robust trace metal geochemistry such as isotopes and speciation may be critical for understanding the intersections between microbiology and sediment geochemistry.     

Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea Fan, Eastern Mediterranean)

In this study we determined the composition and biogeochemistry of novel, brightly colored, white and orange microbial mats at the surface of a brine seep at the outer rim of the Chefren mud volcano. These mats were interspersed with one another, but their underlying sediment biogeochemistries differed considerably. Microscopy revealed that the white mats were granules composed of elemental S filaments, similar to those produced by the sulfide-oxidizing epsilonproteobacterium "Candidatus Arcobacter sulfidicus." Fluorescence in situ hybridization indicated that microorganisms targeted by a "Ca. Arcobacter sulfidicus"-specific oligonucleotide probe constituted up to 24% of the total the cells within these mats. Several 16S rRNA gene sequences from organisms closely related to "Ca. Arcobacter sulfidicus" were identified. In contrast, the orange mat consisted mostly of bright orange flakes composed of empty Fe(III) (hydr)oxide-coated microbial sheaths, similar to those produced by the neutrophilic Fe(II)-oxidizing betaproteobacterium Leptothrix ochracea. None of the 16S rRNA gene sequences obtained from these samples were closely related to sequences of known neutrophilic aerobic Fe(II)-oxidizing bacteria. The sediments below both types of mats showed relatively high sulfate reduction rates (300 nmol x cm(-3) x day(-1)) partially fueled by the anaerobic oxidation of methane (10 to 20 nmol x cm(-3) x day(-1)). Free sulfide produced below the white mat was depleted by sulfide oxidation within the mat itself. Below the orange mat free Fe(II) reached the surface layer and was depleted in part by microbial Fe(II) oxidation. Both mats and the sediments underneath them hosted very diverse microbial communities and contained mineral precipitates, most likely due to differences in fluid flow patterns.     

奉贤近海仔鱼的分布及其与水环境的关系

根据2006年5月和8月在奉贤附近海域(30°32.40′N-30°49.8′N;121°25.2′E-121°54′E)进行的渔业资源、生态调查资料,对该水域仔稚鱼的种类组成、数量分布的季节变化及其与水环境的关系作了分析.结果表明:鲈形目和鲱形目出现的种类最多;春季种类组成复杂,结构相对夏季要稳定,种间分布较均匀;夏季优势种较春季突出,优势度较大, 数量较多,平面分布呈现由内侧向外侧的递减趋势;长江径流与外海水在外侧水域的南汇嘴处形成咸淡水交汇水域,环境稳定性较差,加之海域处于强潮流区,水沙运移频繁,对仔鱼平面分布产生影响;此海域沿岸地处化工区,水体污染严重,仔鱼的数量和种群减少.     

Transformation of carbonate minerals in a cyano-bacterial mat in the course of laboratory modeling

A laboratory model of a cyano-bacterial mat with mineral layers of carbonates was used to examine the dynamics of the transformation of calcium-magnesium carbonate under the conditions of a soda lake. The activity of various organisms of the cyanobacterial community results in conditions under which the Ca-Mg carbonate precipitate undergoes changes. The crystal lattice of the initial carbonate is restructured; its mineralogical composition changes depending on the conditions of the mat. In magnesium calcites, which are formed under such low-temperature conditions, a rudimentary cation adjustment can occur with the formation of dolomite domains. These experiments confirm the hypothesis that the dolomite found in stromatolites is of a secondary origin and can be formed in the course of transformation of Ca-Mg carbonates under alkaline conditions in an alkaliphilic cyanobacterial community.     

Transformation of carbonate minerals in a cyano-bacterial mat in the course of laboratory modeling

A laboratory model of a cyano-bacterial mat with mineral layers of carbonates was used to examine the dynamics of the transformation of calcium-magnesium carbonate under the conditions of a soda lake. The activity of various organisms of the cyanobacterial community results in conditions under which the Ca-Mg carbonate precipitate undergoes changes. The crystal lattice of the initial carbonate is restructured; its mineralogical composition changes depending on the conditions of the mat. In magnesium calcites, which are formed under such low-temperature conditions, a rudimentary cation adjustment can occur with the formation of dolomite domains. These experiments confirm the hypothesis that the dolomite found in stromatolites is of a secondary origin and can be formed in the course of transformation of Ca-Mg carbonates under alkaline conditions in an alkaliphilic cyanobacterial community.     

Benchscale Assessment of the Efficacy of a Reactive Core Mat to Isolate PAH-Spiked Aquatic Sediments

This paper describes the results of a benchscale testing program to assess the efficacy of a reactive core mat (RCM) for short-term isolation and partial remediation of contaminated, subaqueous sediments. The 1.25-cm-thick RCM (with a core reactive material such as organoclay with filtering layers on top and bottom) is placed on the sediment, and approximately 7.5–10 cm of overlying soil is placed on the RCM for stability and protection. A set of experiments were conducted to measure the sorption characteristics of the mat core (organoclay) and sediment used in the experiments, and to determine the fate of semi-volatile organic contaminants and non-reactive tracers through the sediment and reactive mat. The experimental study was conducted on naphthalene-spiked Neponset River (Milton, MA) sediment. The results show nonlinear sorption behavior for organoclay, with sorption capacity increasing with increasing naphthalene concentration. Neponset River sediment showed a notably high sorption capacity, likely due to the relatively high organic carbon fraction (14%). The fate and transport experiments demonstrated the short-term efficiency of the reactive mat to capture the contamination that is associated with the post-capping period during which the highest consolidation-induced advective flux occurs, driving solid particles, pore fluid, and soluble contaminants toward the reactive mat. The goal of the mat placement is to provide a physical filtering and chemically reactive layer to isolate contamination from the overlying water column. An important finding is that, because of the high sorption capacity of the Neponset River sediment, the physical filtering capability of the mat is as critical as its chemical reactive capacity.     

Phosphate and calcium carbonate saturation in a stratified coastal lagoon

Seasonal variation of phosphate concentration and saturation index for calcite in water of a small stratified coastal lagoon have been studied. In surface waters, where salinity was low and pH high, the saturation index increased to values near 20, whereas in bottom water, with high salinity and low pH, they were usually lower. The ionic product for H₃PO₄ was strongly correlated with the ionic product of Ca(OH)₂ in surface and bottom waters, and with the ionic product of CaCO₃ in bottom, which suggested that chemical composition was mainly controlled by a calcium-phosphate solid phase.The low concentrations of phosphate in surface were due to chemical precipitation and organic sedimentation, whereas in bottom, calcium phosphate redissolved and organic matter was mineralized producing high concentrations of soluble phosphate (> 60 µmol l^–1).Decrease of calcium-bound phosphate in the upper layers of sediment was in agreement with a diminution of calcium-phosphate precipitation, probably due to a lower influence of seawater in the past.     

Studies on the ultrastructure of bone

X-ray micro-diffraction investigations of synthetic calcium phosphates of different composition and of bones show, that there can be relatively large variations in the chemical composition without changes in the interplanar spacings. The fact that the orientation of the mineral salts is the same in newly formed and old bone as well as in hyperparathyroidism, indicates that the ultrastructure of bone remains relatively unchanged in different physiological and pathological conditions.     

A benthic perspective in assessing the ecological status of estuaries: The case of the Mondego estuary (Portugal)

In transitional waters the process of defining reference conditions (in the scope of the WFD) must account for the natural great variability of such environments. Therefore, stretches reflecting different physical–chemical and biological conditions throughout the system should be defined in order to correctly establish benthic specific reference conditions. Both salinity and sediment structure are major factors controlling physical–chemical conditions and therefore organisms’ distribution within an estuary. These environmental variables (salinity, sediment grain size composition and organic matter content) patterns were studied in the Mondego estuary and some clear gradients emerged. Also, ecological indices (AMBI, Margalef and Shannon-Wiener) were applied to subtidal benthic communities of the Mondego estuary and, generally, there was not only evidence of a decrease in diversity in the estuary from the downstream section towards its inner parts, but also differences were found between areas of distinct sediment composition. After comparing environmental patterns with biodiversity trends, the information was used to define homogeneous sectors along a temperate estuary in Portugal. In the Mondego estuary six zones, covering the main physical gradients affecting benthic communities, were defined: four in the northern arm and two in southern arm. Zones established will allow future determination of benthic reference conditions adjusted for each of the sectors, according to their characteristics, and consequently the conditions they provide for benthic assemblages settlement.     

Chemical composition of leaves and structure of photosynthetic apparatus in aquatic higher plants

Chemical composition of leaves (the content of carbon, nitrogen, nonstructural carbohydrates, organic acids, mineral substances, and water) and the structure of photosynthetic apparatus (specific leaf weight, cell volume, and the number of cells per unit leaf area) were investigated for 18 species of aquatic plants featuring various degrees of contact with aqueous environment and sediment. The rooted hydrophytes with floating leaves were characterized by comparatively high content of carbon and nitrogen (437 and 37 mg/g dry wt, respectively) and by low concentration of nonstructural carbohydrates, mineral substances, and organic acids (161, 54, and 60 mg/g dry wt, respectively). Unlike rooted plants, the free-floating nonrooted hydrophytes had characteristically higher content of nonstructural polysaccharides and mineral substances (by a factor of 1.3 and 1.6, respectively), while the leaf nitrogen content was 1.4 times lower, and the proportion of soluble carbohydrates in the total content of nonstructural carbohydrates was rather low (9%). The chemical composition of leaves in submerged rooted hydrophytes was intermediate between those for rooted hydrophytes with floating leaves and for nonrooted free plants. We found reliable positive correlations between the volume of photosynthesizing cells and the leaf content of organic acids (r = 0.69), as well as between specific leaf weight, the number of photosynthesizing cells per unit leaf area, and carbon content (r = 0.67 and r = 0.62, respectively). The content of nitrogen and nonstructural carbohydrates in hydrophytes was unrelated to structural characteristics of photosynthetic apparatus and depended on the absence or presence of plant attachment to the sediment. It is concluded that the structural traits of photosynthetic apparatus and the leaf chemical composition in hydrophytes featuring different degrees of plant contact with water and sediment reflect the specificity of plant adaptation to complex conditions of their habitats.     

Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China Sea as a model

How ocean currents shape fungal transport, dispersal and more broadly fungal biogeography remains poorly understood. The East China Sea (ECS) is a complex and dynamic habitat with different water masses blending microbial communities. The internal transcribed spacer 2 region of fungal rDNA was analysed in water and sediment samples directly collected from the coastal (CWM), Kuroshio (KSWM), Taiwan warm (TWM) and the shelf mixed water mass (MWM), coupled with hydrographic properties measurements, to determine how ocean currents impact the fungal community composition. Almost 9k fungal operational taxonomic units (OTUs) spanning six phyla, 25 known classes, 102 orders and 694 genera were obtained. The typical terrestrial and freshwater fungal genus, Byssochlamys, was dominant in the CWM, while increasing abundance of a specific OTU affiliated with Aspergillus was revealed from coastal to open ocean water masses (TWM and KSWM). Compared with water samples, sediment harboured an increased diversity with distinct fungal communities. The proximity of the Yangtze and Qiantang estuaries homogenizes the surface water and sediment communities. A significant influence of ocean currents on community structure was found, which is believed to reduce proportionally the variation explained by environmental parameters at the scale of the total water masses. Dissolved oxygen and depth were identified as the major parameters structuring the fungal community. Our results indicate that passive fungal dispersal driven by ocean currents and river run‐off, in conjunction with the distinct hydrographic conditions of individual water masses, shapes the fungal community composition and distribution pattern in the ECS.     

Global distribution and diversity of marine Verrucomicrobia

Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions. Verrucomicrobia were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences, Verrucomicrobia constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of Verrucomicrobia displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions, Verrucomicrobia community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of Verrucomicrobia lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean.     

The nature of a shield lake sediment

The nature of the sediment of Drinking Lake in the Churchill River Basin in Canada was studied with special reference to its chemical and colloidal composition. Crystalline minerals present in the colloidal fractions of the sediment are quartz, cristobalite, feldspars, micas, amphiboles, vermiculite, chlorite and kaolinite. Sesquioxidic components and the extractable Ca and Mg are present not only in the colloidal fractions but also in the non-colloidal fractions of the sediment. Over 99% of the nitrogen in the sediment is organic and about 60% of the sediment phosphorus is inorganic. The importance of the crystalline and non-crystalline mineral components of the sediment studied in the exchange of nutrients between the sediment and its overlying water is discussed. In view of the important roles of these mineral components in affecting the transfer of nutrients, possible significant modifications of the quality of the lake water after impoundment, if a dam were constructed in the basin for a hydro-electric development, deserve close attention.     

Sensitivity of Heterogeneous Marine Benthic Habitats to Subtle Stressors

It is important to understand the consequences of low level disturbances on the functioning of ecological communities because of the pervasiveness and frequency of this type of environmental change. In this study we investigated the response of a heterogeneous, subtidal, soft-sediment habitat to small experimental additions of organic matter and calcium carbonate to examine the sensitivity of benthic ecosystem functioning to changes in sediment characteristics that relate to the environmental threats of coastal eutrophication and ocean acidification. Our results documented significant changes between key biogeochemical and sedimentary variables such as gross primary production, ammonium uptake and dissolved reactive phosphorus flux following treatment additions. Moreover, the application of treatments affected relationships between macrofauna communities, sediment characteristics (e.g., chlorophyll a content) and biogeochemical processes (oxygen and nutrient fluxes). In this experiment organic matter and calcium carbonate showed persistent opposing effects on sedimentary processes, and we demonstrated that highly heterogeneous sediment habitats can be surprisingly sensitive to subtle perturbations. Our results have important biological implications in a world with relentless anthropogenic inputs of atmospheric CO₂ and nutrients in coastal waters.     

Contribution to the ecology ofStipa species in central Europe: Distribution of mineral elements in soils and phytomass

In 1963, 1964 and 1965, a comparative ecological study was made of the distribution of mineral elements in the soil and phytomass of some Stipa species, viz.Stipa capillata L., S. pulcherrima C. Koch,S. joannis ?elak.,S. dasyphylla ?erň.,and S. stenophylla ?erň. in various locations of Central Europe. In all species and sites studied, chemical analyses of the soil, fresh phytomass (shoots and roots) and dead phytomass were made, together with relevant statistical evaluation. IndividualStipa species differ according to their mineral composition. In comparison with fresh green plant material, the old dead plant material shows a marked increase in ash, calcium, and natrium content. Potassium, nitrogen, and phosphorus show a decrease in the dead plant material. The mineral composition of the roots differs considerably from that of green plant parts: the roots have much higher ash, phosphorus, calcium and natrium content, and lower organic matter, nitrogen, and potassium content. On the basis of the data collected, an attempt was made to estimate cycling of the individual mineral elements.     

The microbial community at laguna Figueroa,Baja California Mexico: From miles to microns

Laguna Figueroa is a lagoonal complex on the Pacific coast of the Baja California penisula 200 km south of the Mexican-United States border. The hypersaline lagoon is 16 km long and 2–3 km wide with a salt marsh and evaporite flat and is separated from the ocean by a barrier dune and beach. At the salt marsh-evaporite flat interface a stratified microbial community dominated byMicrocoleus chthonoplastes is depositing laminated sediments. Similar stratiform deposits with associated microbial mat communities have been found in cherts of the Fig Tree Group, South Africa which are 3.4 GE in age.Heavy rains in the winters of 1978–1979 and 1979–1980 flooded the evaporite flat with 1–3 meters of meteoric water and buried the laminated sediment under 5–10 cm of siliciclastic and clay sediment. These flooding events had a dramatic effect on the composition of the mat community. TheMicrocoleus dominated community, with species ofChloroflexus sp. and anEctothiorhodospira-like filamentous purple phototroph, disappeared leaving a community dominated by the purple phototrophsChromatium sp. andThiocapsa sp. Recolonization of the surface by species of the cyanobacteriaOscillatoria sp. andSpirulina sp. preceded the return of theMicrocoleus community.Field conditions were monitored by ground based observations and supplemented with LandSat and Skylab imagery. The microbial community was studied with light microscopy and transmission electron microscopy. The change in dominating microbial species was correlated with the episodes of flooding.     

Phosphate adsorption on bottom sediments of the Rio de la Plata

A study of the phosphate adsorption onto the bottom sediments of the Rio de la Plata has been made with the aim to understand the dynamics of this compound in the fluvio-marine system. Previous to the chemical analysis of the phosphate content, an extraction of the different adsorbed phosphate fractions have been made. In addition to phosphate, calcium, iron and aluminium in the sediment samples were determined. The phosphate is associated to the fine fractions of the sediments and good correlations with Al and Fe content in the bottom sediments were found. There is a relative decrease of the adsorbed phosphate on the bottom sediment in the areas where the influence of the marine water is more conspicuous; it is explained by the pH increase of the estuary waters due to the mixture with the marine waters. A hypothesis about the role of the ionic strength and the pH on the phosphate adsorption process is suggested.