River Red Gum (Eucalyptus camaldulensis Dehnh.) organic matter as a carbon source in the lower Darling River,Australia

The Darling River, in New South Wales, Australia, is a large semi-arid system with a highly variable flow regime, characterised by unpredictable events of flooding and drought. In large lowland rivers like the Darling, lateral (river-floodplain) interactions can greatly influence both physical and biological components of the system. The floodplain and riparian zone of the Darling River is dominated by River Red Gum (RRG), Eucalyptus camaldulensis. The large amount of organic matter they produce accumulates on the floodplain and on benches within the channel, and is subject to alternate periods of flooding and drying as a result of highly variable flows. This paper examines the effect of alternate periods of flooding and drying on the processing of E. camaldulensis organic matter. Results of the 6-month in situ field study, together with results from laboratory experiments comparing dissolved organic carbon (DOC) release from various RRG litter types, suggest that RRG leaves provide the most bio-available source of carbon to the system, while bark may be more important as a habitat for invertebrates and other fauna. Laboratory experiments exploring the effect of drying and re-flooding on litter breakdown and release of DOC suggested that the majority of DOC was released from RRG leaves in the first 24 h of inundation. Also, upon drying and re-flooding of the leaves, a smaller but significant release of DOC occurred. However, an alternative wet/dry cycle did not affect weight loss of the leaf litter. Results of the field and lab experiments suggest that RRG leaves represent an important source of carbon to the Darling River, with inputs being influenced by the highly variable flow regime.     

Evaluation of a visual assessment method for tree condition of eucalypt floodplain forests

Summary For decades the floodplain forests of the River Murray have endured the effects of prolonged water stress. This has resulted in significant crown dieback and loss of condition. The Living Murray (TLM) initiative aims to restore the ecological health of six Icon Sites along the River. The two eucalypts River Red Gum (Eucalyptus camaldulensis) and Black Box (Eucalyptus largiflorens) that dominate the forests at five of the six Icon Sites are undergoing widespread decline. To enable effective management and restoration of these forests, we developed a standardised tree condition assessment method. Named the TLM tree condition assessment method, it utilises visual assessment of a range of tree crown variables (extent and density of the foliage in the crown, epicormic growth, new tip growth, reproductive activity, leaf die‐off, mistletoe infestation) and measurements of bark condition, diameter at breast height and dominance class. This article describes the TLM tree condition assessment method and assesses it for consistency between multiple observer teams after limited training. The level of observer agreement between six teams each comprised of two observers was assessed for seven of the ten variables. Intra‐class correlation was used to compare scores of 30 River Red Gum trees assessed on Gunbower Island on the River Murray. The level of agreement for all variables was statistically significant with six of seven variables having correlation coefficients over R = 0.5. The TLM tree condition assessment method was found to provide accurate estimates of a range of tree variables that can be used to determine tree condition. The TLM tree condition assessment method provides a valuable monitoring tool that can be used to assess management interventions, such as management flooding and silvicultural thinning.     

Long‐term effects of exclusion of grazing stock on degraded herbaceous plant communities in a riparian Eucalyptus camaldulensis forest in south‐eastern Australia

Abstract Stock grazing has degraded many riparian ecosystems around the world. However, the potential for ecosystem recovery following the removal of grazing stock is poorly known. We developed a conceptual model to predict the responses of native and exotic herbaceous plants to grazing exclusion, based on site productivity and the degree of initial vegetation degradation. The effects of excluding grazing stock on richness, cover and composition of herbaceous plants were examined over 12 years in the degraded understorey of a riparian forest in Gulpa Island State Forest in south‐eastern Australia. We predicted that grazing exclusion would lead to limited changes in vegetation cover, richness and composition, owing to presumed low site productivity and the high degree of understorey degradation. Results showed that the cover, richness and composition of native and exotic species varied significantly among years. Over all plots, regions and years, total cover was slightly but significantly lower in grazed than in ungrazed plots (43.4% vs. 50.8%). While the cover of native plants increased over time in both treatments, the rate of increase was slightly greater in ungrazed plots. Grazing exclusion had no effect on the richness of native or exotic species, but had a significant but minor impact on plant composition, with different common species (mostly exotics) being promoted or diminished in ungrazed plots. The composition of grazed and ungrazed areas did not become more different over time. Overall, the effects that could be attributed to grazing exclusion were relatively minor and transient. Results are consistent with predictions based on site productivity and initial degradation, and should not be extrapolated to other more productive, or less degraded, riparian systems.     

Novel gene expression profiles define the metabolic and physiological processes characteristic of wood and its extractive formation in a hardwood tree species,Robinia pseudoacacia

Wood is of critical importance to humans as a primary feedstock for biofuel, fiber, solid wood products, and various natural compounds including pharmaceuticals. The trunk wood of most tree species has two distinctly different regions: sapwood and heartwood. In addition to the major constituents, wood contains extraneous chemicals that can be removed by extraction with various solvents. The composition and the content of the extractives vary depending on such factors as, species, growth conditions, and time of year when the tree is cut. Despite the great commercial and keen scientific interest, little is known about the tree-specific biology of the formation of heartwood and its extractives. In order to gain insight on the molecular regulations of heartwood and its extractive formation, we carried out global examination of gene expression profiles across the trunk wood of black locust (Robinia pseudoacacia L.) trees. Of the 2,915 expressed sequenced tags (ESTs) that were generated and analyzed in the current study, 55.3% showed no match to known sequences. Cluster analysis of the ESTs identified a total of 2278 unigene sets, which were used to construct cDNA microarrays. Microarray hybridization analyses were then performed to survey the changes in gene expression profiles of trunk wood. The gene expression profiles of wood formation differ according to the region of trunk wood sampled, with highly expressed genes defining the metabolic and physiological processes characteristic of each region. For example, the gene encoding sugar transport had the highest expression in the sapwood, while the structural genes for flavonoid biosynthesis were up-regulated in the sapwood-heartwood transition zone. This analysis also established the expression patterns of 341 previously unknown genes.     

Survival of Pacific oyster, Crassostrea gigas, oocytes in relation to intracellular ice formation

The effect of IIF in Pacific oyster oocytes was studied using cryo and transmission electron microscopy (TEM). The viability of oocytes at each step of a published cryopreservation protocol was assessed in an initial experiment. Two major viability losses were identified; one when oocytes were cooled to −35 °C and the other when oocytes were plunged in liquid nitrogen. Although the cryomicroscope showed no evidence of IIF in oocytes cooled with this protocol, TEM revealed that these oocytes contained ice crystals and were at two developmental stages when frozen, prophase and metaphase I. To reduce IIF, the effect of seven cooling programmes involving cooling to −35 or −60 °C at 0.1 or 0.3 °C min⁻¹ and holding for 0 or 30 min at −35 or −60 °C was evaluated on post-thaw fertilization rate of oocytes. Regardless of the cooling rate or holding time, the fertilization rate of oocytes cooled to −60 °C was significantly lower than that of oocytes cooled to −35 °C. The overall results indicated that observations of IIF obtained from cryomicroscopy are limited to detection of larger amounts of ice within the cells. Although the amount of cellular ice may have been reduced by one of the programmes, fertilization was reduced significantly; suggesting that there is no correlation between the presence of intracellular ice and post-thaw fertilization rate. Therefore, oyster oocytes may be more susceptible to the effect of high solute concentrations and cell shrinkage than intracellular ice under the studied conditions.     

Endogenous gibberellin- and cytokinin-like substances in cultured shoot tissues of apple,Malus pumila cv. Jonathan,in relation to adventitious root formation

The frequencies of adventitious root formation in vitro of isolated shoots from bud cultures of apple (Malus pumila cv. Jonathan) after 1, 7 and 31 subcultures (weeks 5, 29 and 109 after the initial culture) were 5, 78 and 95% respectively. Endogenous gibberellin-like substances (GA) were extracted, chromatographed on SiO₂ partition columns, and assayed on dwarf rice (Oryza sativa cv. Tan-ginbozu). The levels of GA in shoots from the 1st, 7th and 31st subcultures were 40, 19 and 14 ng GA₃ eq./g dry weight of tissue, respectively, a trend which suggests an inverse relationship between endogenous GA level and rooting ability. This is consistent with the fact that applied GA₃ inhibits rooting in apple and many other species. The major peak of GA activity eluted coincidentally with GA₁/GA₃/GA₁₉. Endogenous cytokinin-like substances (CK) were chromatographed on paper and assayed with soybean hypocotyl sections. In contrast to the decrease in GA activity, CK activity increased 1.5–2.7 fold in the later subcultures (cytokinin activity per shoot, however, declined).     

Extractable activities and protein content of sucrose-phosphate synthase, sucrose synthase and neutral invertase in trunk tissues of Robinia pseudoacacia L. are related to cambial wood production and heartwood formation

The presence of sucrose synthesizing and degrading enzymes and the correlation of their enzyme activity with cambial growth and heartwood formation are demonstrated in trunks of Robinia pseudoacacia L., black locust. Sucrose is formed by sucrose-phosphate synthase (SPS; EC 2.4.1.14), predominantly in the storage part of the sapwood. In the cambial differentiation zone and the sapwood-heartwood transition zone, both of which constitute carbohydrate sinks, sucrose is primarily cleaved by sucrose synthase (SuSy; EC 2.4.1.13) and a neutral invertase (NI; EC 3.2.1.26). In spring, enhanced activities of SuSy and NI were found in the differentiating xylem tissues. This coincided with elevated SPS rates at the sites of starch mobilization. Heartwood formation in autumn, a period of intense accumulation of phenolics in the innermost living wood tissues, was accompanied by high activities of SuSy and NI. Increased SPS and NI activities in all tissues of winter samples could be correlated with cold acclimation. Probing of SPS and SuSy protein from black locust with heterologous antibodies revealed a subunit size of 130 kDa for SPS and of 89 kDa for SuSy. Both SPS and SuSy exhibited a linear correlation between catalytic activity and amount of enzyme protein with respect to the radial profile from bark to inner core and with respect to the seasonal course. The highest amounts of SuSy-specific mRNA were detected in differentiating xylem in summer and the sapwood-heartwood transition zone in autumn. These data are taken as evidence for a pivotal role of SuSy in supplying carbon skeletons for the biosynthesis of secondary substances in woody axes. Received: 6 May 1998 / Accepted: 28 July 1998     

Temporal and spatial variation of forest biomass in relation to stand dynamics in a mature,lowland tropical rainforest,Malaysia

To clarify consistency in the size of carbon pool of a lowland tropical rainforest, we calculated changes in above-ground biomass in the Pasoh Forest Reserve, Peninsular Malaysia. We estimated the total above-ground biomass of a mature stand using tree census data obtained in a 6-ha plot every 2years from 1994 to 1998. The total above-ground biomass decreased consistently from 1994 (431Mgha^–1) to 1998 (403Mgha^–1) (1Mg=10³ kg). These are much lower than that in 1973 for a 0.2ha portion of the same area, suggesting that the the total above-ground biomass reduction might have been consistent in recent decades. This trend contrasted with a major trend for neotropical forests. During 1994–1998, the forest gained 23.0 and 0.88Mgha^–1 of the total above-ground biomass by tree growth and recruitment, respectively, and lost 51.9Mgha^–1 by mortality. Overall, the biomass decreased by 28.4Mgha^–1 (i.e. 7.10Mgha^–1·year^–1), which is almost equivalent to losing a 76-cm-diameter living tree per hectare per year. Analysis of positive and negative components of biomass change revealed that deaths of large trees dominated the total above-ground biomass decrease. The forest biomass also varied spatially, with the total above-ground biomass density ranging 212–655Mgha^–1 on a 0.2-ha basis (n= 30 subplots, 1998) and 365–440Mgha^–1 on a 1ha basis. A large decrease of the total above-ground biomass density (>50Mg per ha per 2years) in several 0.2-ha subplots contributed to the overall decrease in the 6-ha total above-ground biomass. In the present study, we discuss the association between forest dynamics and biomass fluctuation, and the implication for carbon cycling in mature forests with emphasis on forest monitoring and assessments of soil and decomposition systems.     

Crown development in a pioneer tree, Rhus trichocarpa, in relation to the structure and growth of individual branches

Based on an allometric reconstruction, the structure and biomass-allocation patterns of branches and current-year shoots were investigated in branches of various heights in the pioneer tree Rhus trichocarpa, to evaluate how crown development is achieved and limited in association with height. Path analysis was conducted to explore the effects of light availability, basal height and size of individual branches on branch structure and growth. Branch angle was affected by basal height, whereas branch mass was influenced primarily by light availability. This result suggests that branch structure is strongly constrained by basal height, and that trees mediate such constraints under different light environments. Previous-year leaf area and light availability showed positive effects on current-year stem mass. In contrast, branch basal height and mass negatively affected current-year stem mass. Moreover, the length of stems of a given diameter decreased with increasing branch height. Therefore the cost of biomass investment for a unit growth in length is greater for branches of larger size and at upper positions. Vertical growth rate in length decreased with increasing height. Height-dependent changes in stem allometry and angle influenced the reduction in vertical growth rate to a similar degree.     

Sociometry and sociogenesis of colonies of the harvester ant, Pogonomyrmex badius: distribution of workers, brood and seeds within the nest in relation to colony size and season

1. The vertical distribution in the nest of chambers, workers, callow workers, brood and seeds was studied in the harvester ant, Pogonomyrmex badius, in northern Florida. On each of four sample dates (May, July, October, January), six to seven colonies, chosen to represent the full range of sizes, were excavated. All chamber contents were collected and counted. Chambers were mapped and measured. In a preliminary study, two nests were excavated after preventing vertical migration by driving barriers into the wall of a pit next to the nest, severing the vertical tunnels. The vertical distribution of these barrier-nests differed little from unrestrained nests, indicating that unrestrained excavation produced a reasonable picture of vertical distributions. 2. Nest depth, chamber number and total area increased with colony size. Chamber area declined sharply with depth, as did chamber number, such that more than half of the total area was found in the upper quarter of the nest. 3. The proportion of dark-coloured (older) workers also declined strongly with depth, but this decline was weaker in the spring, and depended to a modest degree on colony size. Conversely, in the distribution of callow (young) workers, the proportion increased towards the bottom of the nest. Mean worker age was inversely related to the depth at which workers were found. The proportion of the brood also increased towards the bottom of the nest, with worker brood, sexual brood, pupae and larvae all being distributed similarly. 4. By contrast, seeds were stored at a preferred absolute depth between 40 and 100 cm. Colonies shallower than 100 cm stored seeds in their deepest chambers. Larger colonies stored most seeds in the upper third of the nest, but patterns were somewhat erratic because chambers were either filled completely with seeds or were empty. 5. Because chamber area decreased sharply with depth, the densities (individuals cm^–2) of all colony members, including dark workers, were lowest near the surface and highest in the deepest parts of the nest. Here, worker densities ranged from 2 to 8 cm^–2, and brood from 2 to 25 cm^–2. 6. The regularity of the patterns of distribution suggests that harvester ant colonies have considerable spatial and temporal structure, which serves or is the outcome of important colony processes. A simple mechanism that could generate several of these patterns is discussed. New workers produced deep in the nest move upwards as they age. As they leave the brood zone they change from brood care to general nest duties, including increased nest excavation, leading to the top-heavy pattern of nest area. As they appear at the surface, they change to guarding and foraging. Thus, age polyethism may be partly the result of this upward migration of workers.     

The distribution and prevalence of sponges in relation to environmental gradients within a temperate sea lough: vertical cliff surfaces

Abstract. The prevalence and distribution of sponges was surveyed on vertical cliff surfaces at Lough Hyne Marine Nature Reserve, Co. Cork, Ireland. The number of sponge species was recorded at 6-metre depth intervals at four sites within Lough Hyne, and at one site on the adjacent Atlantic coastline to examine differences in abundance and zonation patterns. Sites ranged from an exposed turbulent regime to sheltered, sedimented environments. Individual species showed different distributions and prevalence between sites and with increasing depth. Greatest differences were observed between the most- and least-disturbed sites. Distinct sponge zonation patterns were evident at all sites sampled. Twenty-five species were considered dominant at all five sites with the remaining 48 species considered rare. Only four of the 25 most-dominant species occurred at the site experiencing the most turbulent flow conditions, whereas 12 species were found at the site of unidirectional fast flow. At sites of moderate to slight water movement and high sedimentation, between 18 and 24 of the most dominant species were present. Encrusting forms constituted high proportions of sponge communities at all five sites sampled (although consisting of different species). At sites of turbulent and unidirectional fast flow massive forms also dominated whereas at the least turbulent sites, where sedimentation was high, arborescent sponges were abundant. Few species showed exclusive distribution to a single depth and site, but there was some degree of correlation between species distributions and abiotic factors such as sedimentation rate and flow regimes. Sponge distributions and densities are discussed with respect to the suitability of species' morphologies to particular environments, intra-specific and inter-specific competition and physiological adaptations that enable them to survive in different habitats.     

Occurrence of Gobiidae larvae in a tropical Brazilian estuary,with particular emphasis on the use of size classes to categorize species guilds

The structure and seasonal dynamics of larvae of the Gobiidae family in the Mucuri Estuary (Bahia, Brazil) were studied for nine consecutive years. Sampling was conducted at three stations in the lower estuary channel, between 2002 and 2010, in relation to season, day and night and tidal variations. A total of 5802 Gobiidae larvae, representing 15 taxa (12 species and three morphotypes), were collected in the Mucuri Estuary during this time. The highest mean ± s.d. density of fish larvae, 54·7 ± 79·8 larvae 100 m^?3, was recorded during the flood tide and night sampling. Ctenogobius boleosoma was the most abundant species (68%), being dominant in the rainy and dry seasons and had a long reproductive period. This species was classed as a marine estuarine‐opportunist because it was observed at high frequencies and active larvae entering the estuary between 6·1 and 12·0 mm standard length (L_S). Gobionellus oceanicus, second in abundance (12%), occurred only in later larval stages but did not use the estuary as a preferred location for spawning, being classed a marine estuarine dependent. Microgobius carri (11%) was represented in all L_S classes and was resident in the estuary for spawning, remaining there throughout their life cycle. The other species were considered rare due to their low densities and could not be classified in any guild.     

The distribution and prevalence of sponges in relation to environmental gradients within a temperate sea lough: inclined cliff surfaces

Abstract. Sponge communities on inclined cliff surfaces (40°) at Lough Hyne Marine Nature Reserve, Co. Cork, Ireland were sampled at five sites (four inside the lough and one on the adjacent Atlantic coast). Each site varied in sedimentation rate and flow regime. Sites ranged from turbulent (with negligible sedimentation) to very low flow (< 3 cm⁻¹) and highly sedimented regimes. Sponge species showed variation between sites and depth. The greatest difference in sponge communities was observed between the most turbulent and most sedimented sites. The distinct zonation patterns, present at all sites, were most pronounced at the highly sedimented sites. Encrusting forms constituted a high proportion of the sponges at all sites. However encrusting species found at the turbulent site were different to those at the sedimented sites. Arborescent species were common, mainly at the sedimented sites within Lough Hyne. Distributions of sponge species are considered with respect to morphological adaptation, competition and physiological adaptation. The distributions of sponge species on inclined surfaces are also compared with those on vertical cliff faces.     

Demography of a non-sprouting and resprouting Hakea species (Proteaceae) in fire-prone Eucalyptus woodlands of southeastern Australia in relation to stand age,drought and disease

Population size-structures, seed production, canopy seed storage (serotiny), and recruitment were investigated in relation to fire, drought and disease for a pair of co-occurring resprouting and non-sprouting shrub species from the genus Hakea (Proteaceae) in fire-prone Eucalyptus woodlands in western Victoria, Australia. The non-sprouter species, Hakea decurrens, showed faster height growth, higher seed production and higher seed viability than the resprouter, Hakea rostrata. Population size structures in stands up to 24 years since last fire showed no evidence of inter-fire recruitment for either species. Following a fire in 1990 in a mixed species stand 15–20 years old, the estimated number of viable seeds released from canopy-stored seed banks was approximately equal for both species. However, the rate of seedling establishment in the first year was about 10 times higher, and seedling suvivorship over the first 5 years was seven times higher, for the non-sprouter. Seedlings of Hakea decurrens and resprouts of Hakea rostrata began to produce seeds within three years of the last fire, while the few surviving seedlings of Hakea rostrata showed no evidence of reproductive maturity after six years. Inter-fire recruitment was recorded for the non-sprouter, Hakea decurrens, in the oldest stand (burned in 1967) between 24 and 28 years since last fire. This was associated with an increased rate of seed release from serotinous fruits due to the onset of high rates of adult plant mortality. High adult mortality and increased seed release correlated with increasing stand age, the occurrence of severe drought, and the likely presence of Phytophthora cinnamomi, a fungal pathogen which damages the root system, reducing water and nutrient uptake. There were no new recruits for the resprouter Hakea rostrata in this stand, but old plants continued to resprout from basal lignotubers and no mortality was observed. While recruitment of strongly serotinous shrub species is commonly described as being restricted to the immediate post-fire period, the present study illustrates that other events (e.g., senescence, drought, disease) can lead to recruitment of serotinous non-sprouters and may be important in the maintenance of populations during unusually long periods without fire.     

The erectile cheek-spine apparatus in the bristlenose catfish Ancistrus (Loricariidae, Siluriformes), and its relation to the formation of a secondary skull roof

In the South American catfish family Loricariidae, the opercle has been decoupled from the lower jaw, and has also lost its function in expiration. While many loricariid species have a small and slightly mobile opercle with reduced opercular musculature, within the hypostomine subfamily a novel opercular mechanism has developed that erects a tuft of enlarged odontodes anterior to the opercle. This defensive mechanism is examined in Ancistrus cf. triradiatus. The opercle has a prominent anterior process and the orientation of the reinforced articulation hinge to the hyomandibular bone has shifted. The opercular musculature is well developed, with a hypertrophied dilatator operculi that extends deep inside the skull roof bones and toward the midline, over the brain, but below the superficial skull roof. Hence the frontal, sphenotic, parieto-supraoccipital and compound pterotic bones consist of a dorsal, superficial part and a deeper part separating the brain from the muscle: two functional skull roofs are thus formed. The impact on the path of the cranial sensory canals is substantial, moving canals away from the skull surface. Hypertrophy of cranial muscles is known from many teleosts, but the invasion of such large muscles into the skull, which is drastically modified and literally hollowed out, has never been described before. These cranial modifications are greater in males than in females, related to the territorial behavior of the former, in which the erectile spines are usually used.     

The initial inhibition of protochlorophyll regeneration in dark-grown leaves of barley after a short light pulse, and in greening leaves subjected to dark periods followed by a short light pulse

The regeneration of protochlorophyll in darkness after a short irradiation of a dark-grown leaf of barley ( Hordeum distichum L. cv. Weibull's Ingrid), in which the protochlorophyll pool has reached its final value, starts only after a period of 2–6 min. On the other hand, the regeneration starts immediately after a repeated irradiation, provided the dark period between the two irradiations has not been long enough for the end value of the pool size to be reached. The same pattern is followed even during the process of greening. During this process the end value of the pool size of protochlorophyll during dark periods becomes smaller the more chlorophyll has been formed.