Tracing an invasion: landbridges, refugia, and the phylogeography of the Neotropical rattlesnake (Serpentes: Viperidae: Crotalus durissus)

Abstract Pleistocene fragmentation of the Amazonian rainforest has been hypothesized to be a major cause of Neotropical speciation and diversity. However, the role and even the reality of Pleistocene forest refugia have attracted much scepticism. In Amazonia, previous phylogeographical studies have focused mostly on organisms found in the forests themselves, and generally found speciation events to have predated the Pleistocene. However, molecular studies of open-formation taxa found both north and south of the Amazonian forests, probably because of vicariance resulting from expansion of the rainforests, may provide novel insights into the age of continuous forest cover across the Amazon basin. Here, we analyse three mitochondrial genes to infer the phylogeography of one such trans-Amazonian vicariant, the Neotropical rattlesnake (Crotalus durissus), which occupies primarily seasonal formations from Mexico to Argentina, but avoids the rainforests of Central and tropical South America. The phylogeographical pattern is consistent with gradual dispersal along the Central American Isthmus, followed by more rapid dispersal into and across South America after the uplift of the Isthmus of Panama. Low sequence divergence between populations from north and south of the Amazon rainforest is consistent with mid-Pleistocene divergence, approximately 1.1 million years ago (Ma). This suggests that the Amazonian rainforests must have become fragmented or at least shrunk considerably during that period, lending support to the Pleistocene refugia theory as an important cause of distribution patterns, if not necessarily speciation, in Amazonian forest organisms. These results highlight the potential of nonforest species to contribute to an understanding of the history of the Amazonian rainforests themselves.     

Distributional patterns of herpetofauna in monsoon rainforests of the Northern Territory,Australia

Abstract The herpetofauna of 50 monsoon rainforest patches in the Top End of the Northern Territory was surveyed during the dry season of 1990. This fauna contains few obligate monsoon rainforest species, many species which favour this habitat as part of a broad habitat range and a large number of species (indeed most of the regional species pool) that occasionally occur within monsoon rainforests. The taxonomic composition of species favouring monsoon rainforests is a non-random selection from the regional pool, with relatively few species in the families Agamidae and Scincidae occurring commonly in monsoon rainforests. Environmental variation among the rainforest patches sampled was portrayed by ordination, with the first axis corresponding to an environmental gradient from coastal sites to inland rocky rainforests and the second a gradient from relatively dry thickets to tall dense rainforests close to water. The distributions of herpetofauna species were depicted on this ordination space. Most frog species occurred in relatively wet rainforests and most gecko species were relatively restricted to drier rainforests. A substantial component of the herpetofauna was associated with rainforests on rocky substrate. In contrast to this relatively good association with these defined gradients, there was little apparent influence of patch size or level of disturbance on the distribution of individual species of herpetofauna. Sampling month was related to the abundance of many species, with many frog species and some snake and skink species declining (but some skink and one frog species increasing) in abundance in rainforest patches during the late dry season. This seasonal change in abundance is not due to movements from rainforest patches to adjacent vegetation types (or vice versa) but rather to total landscape (cross-habitat) changes in abundance (or detectability). The species composition of patches tended to be idiosyncratic, with substantial variability in composition, even between nearby patches of like environment. Hence it is not possible to nominate a representative rainforest herpetofauna, and indeed a classification of all quadrats (including those from rainforests, rainforest edges and adjacent habitats) based on herpetofauna species composition grouped many non-rainforest quadrats with those from rainforests. There was no rainforest edge herpetofauna assemblage. The herpetofauna from rainforests of the Northern Territory was similar to but somewhat richer than that recorded from the even more attenuated monsoon rainforest area of the Kimberley of northwestern Australia, but shared relatively few species with a sampling from monsoon rainforests from western Cape York. Frog species were more likely to be recorded across these three regions than were snake species. The number of herpetofaunal species per patch was low compared to tropical forests in northeastern Australia, Asia and central America. The long dry season of the Top End may contribute to this impoverishment. However, the small total area of monsoon rainforests in this region, the current scattered network of patches and historical fluctuations in extent and distribution of this habitat are probably at least as important.     

Rainforest—eucalypt forest interactions and the relevance of the biological nomad concept

Transects across the margins of rainforests with eucalypt forests at two sites in New South Wales are described. At Girard State Forest along ten transects it was consistently found that pure rainforest occurs where there is no evidence of past burning; and that rainforest tree species appear to be invading and replacing eucalypt forest through a formerly burned ecotone area. A similar pattern was found at Barrington Tops. It is suggested that adaptations shown by species of tall open forests which enable them to regenerate rapidly after burning may have evolved initially in a fire free, prehuman rainforest environment in response to other types of disturbance.     

Historical climate change and speciation: neotropical seasonally dry forest plants show patterns of both tertiary and quaternary diversification

Historical climate changes have had a major effect on the distribution and evolution of plant species in the neotropics. What is more controversial is whether relatively recent Pleistocene climatic changes have driven speciation, or whether neotropical species diversity is more ancient. This question is addressed using evolutionary rate analysis of sequence data of nuclear ribosomal internal transcribed spacers in diverse taxa occupying neotropical seasonally dry forests, including Ruprechtia (Polygonaceae), robinioid legumes (Fabaceae), Chaetocalyx and Nissolia (Fabaceae), and Loxopterygium (Anacardiaceae). Species diversifications in these taxa occurred both during and before the Pleistocene in Central America, but were primarily pre-Pleistocene in South America. This indicates plausibility both for models that predict tropical species diversity to be recent and that invoke a role for Pleistocene climatic change, and those that consider it ancient and implicate geological factors such as the Andean orogeny and the closure of the Panama Isthmus. Cladistic vicariance analysis was attempted to identify common factors underlying evolution in these groups. In spite of the similar Mid-Miocene to Pliocene ages of the study taxa, and their high degree of endemism in the different fragments of South American dry forests, the analysis yielded equivocal, non-robust patterns of area relationships.     

Richness and Composition of Ground-dwelling Ants in Tropical Rainforest and Surrounding Landscapes in the Colombian Inter-Andean Valley

Tropical rainforests are characterized by having high structural complexity, stratification, and species diversity. In Colombia, tropical rainforests are critically endangered with only 24% of their area remaining. Forest fragments are often valued based on the presence of vertebrate taxa despite that small habitat remnants may still harbor diverse invertebrate communities. We surveyed the ant fauna associated with rainforest fragments and their surrounding landscape elements (including mature forests, flooded forests, gallery forests, live fences, and pastures) in the Magdalena River watershed. Pitfall traps and litter samples were used to estimate ant richness and diversity, and to compare ant composition among landscape elements. We found 135 species from 42 genera, representing 16% of the species and 43% of the genera known for Colombia. Our surveys also uncovered 11 new ant records for the Colombian inter-Andean region and 2 new records for the country of Colombia: Mycocepurus curvispinosus (Mackay) and Rhopalothrix isthmica (Weber). The highest species richness was found in forest-covered sites, and richness and diversity was lower in the disturbed landscapes surrounding the forest patches. Species composition varied significantly between all habitat types, but was most similar between forest types suggesting that a loss of structural complexity has the greatest effect on ant communities. Across our study sites, ten species showed the greatest response to habitat type and could qualify as indicator taxa for this region. We conclude by discussing the value of conserving even small forests in this landscape due to their ability to retain high diversity of ants.     

Recovery of mammal diversity in tropical forests: a functional approach to measuring restoration

Ecological restoration is increasingly applied in tropical forests to mitigate biodiversity loss and recover ecosystem functions. In restoration ecology, functional richness, rather than species richness, often determines community assembly, and measures of functional diversity provide a mechanistic link between diversity and ecological functioning of restored habitat. Vertebrate animals are important for ecosystem functioning. Here, we examine the functional diversity of small‐to‐medium sized mammals to evaluate the diversity and functional recovery of tropical rainforest. We assess how mammal species diversity and composition and functional diversity and composition, vary along a restoration chronosequence from degraded pasture to “old‐growth” tropical rainforest in the Wet Tropics of Australia. Species richness, diversity, evenness, and abundance did not vary, but total mammal biomass and mean species body mass increased with restoration age. Species composition in restoration forests converged on the composition of old‐growth rainforest and diverged from pasture with increasing restoration age. Functional metrics provided a clearer pattern of recovery than traditional species metrics, with most functional metrics significantly increasing with restoration age when taxonomic‐based metrics did not. Functional evenness and dispersion increased significantly with restoration age, suggesting that niche complementarity enhances species' abundances in restored sites. The change in community composition represented a functional shift from invasive, herbivorous, terrestrial habitat generalists and open environment specialists in pasture and young restoration sites, to predominantly endemic, folivorous, arboreal, and fossorial forest species in older restoration sites. This shift has positive implications for conservation and demonstrates the potential of tropical forest restoration to recover rainforest‐like, diverse faunal communities.     

西双版纳热带雨林下砂仁拔除后的生态恢复

 种植砂仁（Amomum villosum）对西双版纳热带雨林植物多样性的影响引起了人们的关注。通过西双版纳热带雨林下种植的砂仁拔除后的生态恢复两年的研究工作,结果表明砂仁排除后：1）林下植物数量显著增加,超过同等类型的没种过砂仁的原始热带雨林;植物种类、物种多样性和均匀度都有大幅度增加,与原始热带雨林差别不大;群落组成成分仍向着热带雨林演替,优势种不明显,其中,草本和蕨类植物增加显著;2）林下植物生长速率在旱季与原始林差别不大,但在雨季可有较快生长;生物量在两年内可达到(636.1±43.4) g·m-2,超过原始林,特别是草本和蕨类植物生长较快;3）土壤含水量得到提高,与原始林相比差异不显著,并且,涵养水源的能力有所增加;深层土壤有机质的含量增加显著,速效磷含量需要更长时间的植被恢复才能有所提高,速效钾受淋洗作用的影响,地表有大量损失。文中最后讨论指出,热带林下砂仁实现斑块式的轮歇种植是协调保护与发展的较好方法,这在偏远少数民族地区有着较好的可行性。     

Can changes in ant diversity along elevational gradients in tropical and subtropical Australian rainforests be used to detect a signal of past lowland biotic attrition?

Increasing temperatures are predicted to have profound effects on montane ecosystems. In tropical forests, biotic attrition may reduce lowland diversity if losses of species due to upslope range shifts are not matched by influxes of warmer‐adapted species, either because there are none or their dispersal is impeded. Australian rainforests consist of a north–south chain of patches, broken by dry corridors that are barriers to the dispersal of rainforest species. These rainforests have repeatedly contracted and expanded during Quaternary glacial cycles. Many lowland rainforests are expansions since the Last Glacial Maximum and may, therefore, show a signal of historical biotic attrition. We surveyed ants from replicated sites along three rainforest elevational transects in eastern Australia spanning 200 to 1200 m a.s.l. and nearly 14° of latitude. We examined elevational patterns of ant diversity and if there was possible evidence of lowland biotic attrition. Each transect was in a different biogeographic region; the Australian Wet Tropics (16.3°S), the central Queensland coast (21.1°S) and subtropical south‐eastern Queensland (28.1°S). We calculated ant species density (mean species per site) and species richness (estimated number of species by incorporating site‐to‐site species turnover) within elevational bands. Ant species density showed no signal of lowland attrition and was high at low and mid‐elevations and declined only at high elevations at all transects. Similarly, estimated species richness showed no evidence of lowland attrition in the Wet Tropics and subtropical south‐east Queensland; species richness peaked at low elevations and declined monotonically with increasing elevation. Persistence of lowland rainforest refugia in the Wet Tropics during the Last Glacial Maximum and latitudinal range shifts of ants in subtropical rainforests during the Holocene climatic optimum may have counteracted lowland biotic attrition. In central Queensland, however, estimated richness was similar in the lowlands and mid‐elevations, and few ant species were indicative of lower elevations. This may reflect historical biotic attrition due perhaps to a lack of lowland glacial refugia and the isolation of this region by a dry forest barrier to the north.     

Papuacedrus (Cupressaceae) in Eocene Patagonia: A new fossil link to Australasian rainforests

The 51.9 Ma Laguna del Hunco (LH) and 47.5 Ma Río Pichileufú (RP) floras from Patagonia, Argentina are unusually rich, angiosperm-dominated assemblages with living relatives in the low-latitude West Pacific, neotropics, and temperate southern latitudes. The diverse gymnosperms in these floras are important for Gondwanan biogeographic history and paleoclimatic interpretations. "Libocedrus" prechilensis Berry 1938 (Cupressaceae), previously known only from the holotype (RP), a vegetative branch, is revised here based on new material from both localities, including a seed cone attached to a shoot with cuticle (LH). Characters of these fossils are diagnostic of monotypic Papuacedrus (highlands of New Guinea and Moluccas). Living P. papuana is most abundant in cloud forests receiving up to 4 m rainfall annually, whereas Austrocedrus (Libocedrus) chilensis, the basis of comparison when the fossil species was named, inhabits dry, cold steppe margins to mediterranean climates in southern South America. We establish Papuacedrus prechilensis comb. nov., which simultaneously invalidates a southern South American connection for the fossil floras and reveals a link to West Pacific montane rainforests. Combined evidence indicates a biome similar to extant subtropical, or tropical montane, rainforests that persisted for at least 4.4 Myr, linking elevated floral richness to abundant rainfall.     

Environmental Control of Root Exudation of Low-Molecular Weight Organic Acids in Tropical Rainforests

The availability of phosphorus (P) can limit net primary production (NPP) in tropical rainforests growing on highly weathered soils. Although it is well known that plant roots release organic acids to acquire P from P-deficient soils, the importance of organic acid exudation in P-limited tropical rainforests has rarely been verified. Study sites were located in two tropical montane rainforests (a P-deficient older soil and a P-rich younger soil) and a tropical lowland rainforest on Mt. Kinabalu, Borneo to analyze environmental control of organic acid exudation with respect to soil P availability, tree genus, and NPP. We quantified root exudation of oxalic, citric, and malic acids using in situ methods in which live fine roots were placed in syringes containing nutrient solution. Exudation rates of organic acids were greatest in the P-deficient soil in the tropical montane rainforest. The carbon (C) fluxes of organic acid exudation in the P-deficient soil (0.7?mol?C?m^?2?month^?1) represented 16.6% of the aboveground NPP, which was greater than those in the P-rich soil (3.1%) and in the lowland rainforest (4.7%), which exhibited higher NPP. The exudation rates of organic acids increased with increasing root surface area and tip number. A shift in vegetation composition toward dominance by tree species exhibiting a larger root surface area might contribute to the higher organic acid exudation observed in P-deficient soil. Our results quantitatively showed that tree roots can release greater quantities of organic acids in response to P deficiency in tropical rainforests.     

Convergence in community structure and dietary adaptation in Australian possums and gliders and Malagasy lemurs

Abstract The possums and gliders of Australia and the lemurs of Madagascar are ideally suited for investigation of radiation and convergence in arboreal mammal communities because of their long history of independent radiation in similar biophysical environments. Possum and glider communities at 22 sites in Australia and lemur communities at 18 sites in Madagascar were compared to evaluate patterns of community and species convergence in two shared habitats (evergreen and deciduous monsoon rainforests) and three derived habitats (Australian eucalypt forests and heaths, and Malagasy thorn scrubs). Arboreal mammals were classified into five dietary guilds for comparison of community structure and species adaptation. There is little evidence of convergence in trophic structure at the community level, but strong evidence of convergence in dietary adaptation at the species and niche level. Malagasy rainforest communities were characterized by a higher proportion of frugivore-folivores, and Australian rainforest and moist eucalypt communities by a higher proportion of folivores and folivore-frugivores. Possum and glider communities in temperate eucalypt forests and heaths supported a higher proportion of nectarivores and exudivores. Overall species richness was significantly higher in Madagascar. Four hypotheses are erected to account for these differences. The relative scarcity of frugivores in Australian evergreen rainforests is accounted for by the predominance of bird-dispersed fruits, and fruiting phenologies unsuitable for mammal exploitation and dispersal. Higher folivore diversity in Australian evergreen rainforests is associated with a more pronounced seasonal shortage of edible fruits and new leaf, which has increased dependence on mature leaf. Folivore species richness is greatest in Australian moist eucalypt forests where structural complexity, sustained by serai responses to wildfire, permits a high level of vertical segregation. Increased nectarivory and exudivory in Australian temperate eucalypt forests and heaths is associated with Mediterranean winter rainfall regimes, which permit year round exudate production, and not with the absence of nectar feeding bats as previously supposed. A lower overall species richness in Australian rainforests is attributed to a longer history of contraction and fragmentation by anthropogenic fires (monsoon rainforests) and Pleistocene climatic change (tropical evergreen rainforests). A high degree of convergence is apparent between genera occupying folivore and wood gouging niches, in terms of gastrointestinal morphology (e.g. Pseudocheirus-Lepilemur) and dental morphology (e.g. Dactylopsila-Daubentonia). Divergences are most apparent in adaptations associated with frugivory, including larger body size, diurnality, and bipedal suspension and leaping modes of locomotion (in Eulemur spp.). This study highlights the importance of founding effects, competition from other vertebrate taxa, coevolution between animals and their food plants, and differences in biophysical environments, as determinants of mammalian radiation and convergence.     

ORIGINS AND RELATIONSHIPS OF TROPICAL NORTH AMERICA IN THE CONTEXT OF THE BOREOTROPICS HYPOTHESIS

The boreotropics hypothesis postulates a preferential tropical biotic interchange between North America and Eurasia during the early Tertiary that was directed by Eocene thermal maxima and the close proximity of these two continental plates. This preferential interchange occurred at a time when South America was geologically and biotically isolated. A prediction of this hypothesis posits that a taxon with a present-day center of diversity in tropical North America, and with an early Tertiary fossil record from any region there, has a high probability of having sister-group relatives in the Paleotropics and derived relatives in South America. We propose a test of this prediction with phylogenetic studies of two pantropical taxa of Leguminosae that have early Tertiary North American fossil records. Our findings are consistent with the boreotropics hypothesis, and additional evidence suggests that many tropical elements in North America could be descendants of northern tropical progenitors. Ramifications of this hypothesis include the importance of integrating the fossil record with cladistic biogeographic studies, theoretical bases for recognizing tropical taxa with such disjunct distributions as Mexico and Madagascar, identification of taxa that may be most useful for testing vicariance models of Caribbean biogeography, and integrating the study of disjunct distributions in temperate regions of the northern hemisphere with those in the neo- and paleotropics.     

Seasonal patterns of horse fly richness and abundance in the Pampa biome of southern Brazil

Fluctuations in seasonal patterns of horse fly populations were examined in rainforests of tropical South America, where the climate is seasonal. These patterns were evaluated with robust analytical models rather than identifying the main factors that influenced the fluctuations. We examined the seasonality of populations of horse flies in fields and lowland areas of the Pampa biome of southern Brazil with generalized linear models. We also investigated the diversity of these flies and the sampling effort of Malaise traps in this biome over two years. All of the 29 species had clear seasonality with regard to occurrence and abundance, but only seven species were identified as being influenced by temperature and humidity. The sampling was sufficient and the estimated diversity was 10% more than observed. Seasonal trends were synchronized across species and the populations were most abundant between September and March and nearly zero in other months. While previous studies demonstrated that seasonal patterns in population fluctuations are correlated with climatic conditions in horse fly assemblages in South America rainforests, we show a clear effect of each factor on richness and abundance and the seasonality in the prevalence of horse fly assemblages in localities of the Pampa biome.     

Nematode Spatial and Ecological Patterns from Tropical and Temperate Rainforests

Large scale diversity patterns are well established for terrestrial macrobiota (e.g. plants and vertebrates), but not for microscopic organisms (e.g. nematodes). Due to small size, high abundance, and extensive dispersal, microbiota are assumed to exhibit cosmopolitan distributions with no biogeographical patterns. This assumption has been extrapolated from local spatial scale studies of a few taxonomic groups utilizing morphological approaches. Recent molecularly-based studies, however, suggest something quite opposite. Nematodes are the most abundant metazoans on earth, but their diversity patterns are largely unknown. We conducted a survey of nematode diversity within three vertical strata (soil, litter, and canopy) of rainforests at two contrasting latitudes in the North American meridian (temperate: the Olympic National Forest, WA, U.S.A and tropical: La Selva Biological Station, Costa Rica) using standardized sampling designs and sample processing protocols. To describe nematode diversity, we applied an ecometagenetic approach using 454 pyrosequencing. We observed that: 1) nematode communities were unique without even a single common species between the two rainforests, 2) nematode communities were unique among habitats in both rainforests, 3) total species richness was 300% more in the tropical than in the temperate rainforest, 4) 80% of the species in the temperate rainforest resided in the soil, whereas only 20% in the tropics, 5) more than 90% of identified species were novel. Overall, our data provided no support for cosmopolitanism at both local (habitats) and large (rainforests) spatial scales. In addition, our data indicated that biogeographical patterns typical of macrobiota also exist for microbiota.     

Mapping Biodiversity and Setting Conservation Priorities for SE Queensland’s Rainforests Using DNA Barcoding

Australian rainforests have been fragmented due to past climatic changes and more recently landscape change as a result of clearing for agriculture and urban spread. The subtropical rainforests of South Eastern Queensland are significantly more fragmented than the tropical World Heritage listed northern rainforests and are subject to much greater human population pressures. The Australian rainforest flora is relatively taxonomically rich at the family level, but less so at the species level. Current methods to assess biodiversity based on species numbers fail to adequately capture this richness at higher taxonomic levels. We developed a DNA barcode library for the SE Queensland rainforest flora to support a methodology for biodiversity assessment that incorporates both taxonomic diversity and phylogenetic relationships. We placed our SE Queensland phylogeny based on a three marker DNA barcode within a larger international rainforest barcode library and used this to calculate phylogenetic diversity (PD). We compared phylo- diversity measures, species composition and richness and ecosystem diversity of the SE Queensland rainforest estate to identify which bio subregions contain the greatest rainforest biodiversity, subregion relationships and their level of protection. We identified areas of highest conservation priority. Diversity was not correlated with rainforest area in SE Queensland subregions but PD was correlated with both the percent of the subregion occupied by rainforest and the diversity of regional ecosystems (RE) present. The patterns of species diversity and phylogenetic diversity suggest a strong influence of historical biogeography. Some subregions contain significantly more PD than expected by chance, consistent with the concept of refugia, while others were significantly phylogenetically clustered, consistent with recent range expansions.     

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free‐living protists

Tropical animals and plants are known to have high alpha diversity within forests, but low beta diversity between forests. By contrast, it is unknown whether microbes inhabiting the same ecosystems exhibit similar biogeographic patterns. To evaluate the biogeographies of tropical protists, we used metabarcoding data of species sampled in the soils of three lowland Neotropical rainforests. Taxa–area and distance–decay relationships for three of the dominant protist taxa and their subtaxa were estimated at both the OTU and phylogenetic levels, with presence–absence and abundance‐based measures. These estimates were compared to null models. High local alpha and low regional beta diversity patterns were consistently found for both the parasitic Apicomplexa and the largely free‐living Cercozoa and Ciliophora. Similar to animals and plants, the protists showed spatial structures between forests at the OTU and phylogenetic levels, and only at the phylogenetic level within forests. These results suggest that the biogeographies of macro‐ and micro‐organismal eukaryotes in lowland Neotropical rainforests are partially structured by the same general processes. However, and unlike the animals and plants, the protist OTUs did not exhibit spatial structures within forests, which hinders our ability to estimate the local and regional diversity of protists in tropical forests.     

Menispermaceae from the Cerrejon Formation, middle to late Paleocene, Colombia

The origin and processes creating the high diversity of plant species in neotropical rain forests and their floristic composition and multistratitified forest structure are still uncertain. Here, we studied one of the most common leaf morphotypes of the Cerrejón flora (middle-late Paleocene, ca. 60-58 Ma), Guajira, Colombia, that contains one of the oldest records of neotropical rain forest floras. Fifty-seven leaf specimens were carefully examined with a focus on general morphology, venation patterns, and cuticular characteristics. The analysis allowed us to recognize four new species that were assigned to the fossil-leaf genus Menispermites on the basis of an ovate leaf shape with cordate to truncate bases, actinodromous primary venation, brochidodromous secondary venation, percurrent tertiary venation, regular polygonal reticulate fourth and fifth venation, well-developed polygonal?areoles, entire margin, and the presence of a fimbrial vein. This set of characters suggests a possible affinity with the pantropical angiosperm family Menispermaceae. The predominantly climbing habit of this family suggests that the Cerrejón Paleocene tropical rain forest was already multistratified. These findings represent the earliest record for the family in northern South America.     

热带雨林的孢粉垂直分布规律——以海南岛现代孢粉雨为例

热带地区环境变化对研究全球气候变化显得越来越重要,热带地区的古环境记录,特别是孢粉记录是恢复过去气候的重要方法,东亚热带地区在冰期－间冰期的气候影响下,生态环境主要表现为山地植被带的垂直升降,因此,定量恢复热带地区第四纪植被垂直移动的幅度,以及作为古气候的替代性指标进行数量化转换是热带地区孢粉研究的关键,然而,我国热带地区现代孢粉雨和植被的关系研究程度较低,给热带第四纪孢粉古生态的恢复和对比带来困难,本研究较系统地总结了海南岛从低地平原到五指山1860m的垂直植被带表土的孢粉散布规律,为热带地区孢粉古环境的重建提供了新的基础数据。研究结果表明,孢粉组合的变化与垂直植被带紧密相关,孢粉的多样性随海拔升高而降低,其中针叶类随海拔升高而增加,蕨类孢子则相应减少,在低地和低山丘陵,孢粉组合显示出为干扰的影响,如防风雨的主要树种木麻黄（Casuarina),行道树台湾相思（Acacia richii)和人为砍伐后大面积生长的芒箕（Dicranopteris)群落等在一些孢粉谱中特别高,尽管如此,孢粉组合反映的垂直植被带变化仍然是清楚的,海南岛由下至上可划分出5个表土孢粉组合带－低地人类强烈干扰带（＜400m):Mallotus,Casuarina,Pinus,Myrica,Palmae,Poaceaae,Dicranopteris:--低地质陵地带（400－800m):Quercus,Castanopsis,Mallotus,Myrica,Platea,Meliaceae和大量孢子（包括Dicranopteris);--山地下带（800-1200m):Castanopsis,Quercus,Podocarpus,Dacrydium,Cyathea和单缝孢子;－－山地上带（1200-1600m):Dacrydium,Pinus,Altingia,Quercus,Castanopsis;－－山顶带（＞1600m):Pinus,Rhododendron,Dacrydium,Symplocos.     

Landscape Patterns in Rainforest Phylogenetic Signal: Isolated Islands of Refugia or Structured Continental Distributions?

Objectives

Identify patterns of change in species distributions, diversity, concentrations of evolutionary history, and assembly of Australian rainforests.

Methods

We used the distribution records of all known rainforest woody species in Australia across their full continental extent. These were analysed using measures of species richness, phylogenetic diversity (PD), phylogenetic endemism (PE) and phylogenetic structure (net relatedness index; NRI). Phylogenetic structure was assessed using both continental and regional species pools. To test the influence of growth-form, freestanding and climbing plants were analysed independently, and in combination.

Results

Species richness decreased along two generally orthogonal continental axes, corresponding with wet to seasonally dry and tropical to temperate habitats. The PE analyses identified four main areas of substantially restricted phylogenetic diversity, including parts of Cape York, Wet Tropics, Border Ranges, and Tasmania. The continental pool NRI results showed evenness (species less related than expected by chance) in groups of grid cells in coastally aligned areas of species rich tropical and sub-tropical rainforest, and in low diversity moist forest areas in the south-east of the Great Dividing Range and in Tasmania. Monsoon and drier vine forests, and moist forests inland from upland refugia showed phylogenetic clustering, reflecting lower diversity and more relatedness. Signals for evenness in Tasmania and clustering in northern monsoon forests weakened in analyses using regional species pools. For climbing plants, values for NRI by grid cell showed strong spatial structuring, with high diversity and PE concentrated in moist tropical and subtropical regions.

Conclusions/Significance

Concentrations of rainforest evolutionary history (phylo-diversity) were patchily distributed within a continuum of species distributions. Contrasting with previous concepts of rainforest community distribution, our findings of continuous distributions and continental connectivity have significant implications for interpreting rainforest evolutionary history and current day ecological processes, and for managing rainforest diversity in changing circumstances.     

Patterns of Phylogenetic Diversity of Subtropical Rainforest of the Great Sandy Region,Australia Indicate Long Term Climatic Refugia

Australia’s Great Sandy Region is of international significance containing two World Heritage areas and patches of rainforest growing on white sand. Previous broad-scale analysis found the Great Sandy biogeographic subregion contained a significantly more phylogenetically even subset of species than expected by chance contrasting with rainforest on white sand in Peru. This study aimed to test the patterns of rainforest diversity and relatedness at a finer scale and to investigate why we may find different patterns of phylogenetic evenness compared with rainforests on white sands in other parts of the world. This study focussed on rainforest sites within the Great Sandy and surrounding areas in South East Queensland (SEQ), Australia. We undertook field collections, expanded our three-marker DNA barcode library of SEQ rainforest plants and updated the phylogeny to 95% of the SEQ rainforest flora. We sampled species composition of rainforest in fixed area plots from 100 sites. We calculated phylogenetic diversity (PD) measures as well as species richness (SR) for each rainforest community. These combined with site variables such as geology, were used to evaluate patterns and relatedness. We found that many rainforest communities in the Great Sandy area were significantly phylogenetically even at the individual site level consistent with a broader subregion analysis. Sites from adjacent areas were either not significant or were significantly phylogenetically clustered. Some results in the neighbouring areas were consistent with historic range expansions. In contrast with expectations, sites located on the oldest substrates had significantly lower phylogenetic diversity (PD). Fraser Island was once connected to mainland Australia, our results are consistent with a region geologically old enough to have continuously supported rainforest in refugia. The interface of tropical and temperate floras in part also explains the significant phylogenetic evenness and higher than expected phylogenetic diversity.