Cloning and sequencing of the hemA gene of Rhodobacter capsulatus and isolation of a δ-aminolevulinic acid-dependent mutant strain

Summary The Rhodobacter capsulatus hemA gene, coding for the enzyme -aminolevulinic acid synthase (ALAS), was isolated from a genome bank by hybridization with a hemT probe from Rhodobacter sphaeroides. Subcloning of the initial 3.9 kb HindIII fragment allowed the isolation of a 2.5 kb HindIII-BglII fragment which was able to complement the -aminolevulinic acid-requiring (ALA-requiring) Escherichia coli mutant SHSP19. DNA sequencing revealed an open reading frame coding for a protein with 401 amino acids which displayed similarity to the amino acid sequences of other known ALASs. However, no resemblance was seen to the HemA protein of E. coli K12. Based on the sequence data, an ALA-requiring mutant strain of R. capsulatus was constructed by site-directed insertion mutagenesis. Introduction of a plasmid, containing the hemA gene of R. capsulatus on the 3.9 kb HindIII fragment, restored ALA-independent growth of the mutant indicating that there is only one gene for ALA biosynthesis in R. capsulatus. Transfer of the R factor pRPS404 and hybridization analysis revealed that the ALAS gene is not located within the major photosynthetic gene cluster.Part of this research was presented at the Symposium on Molecular Biology of Membrane-Bound Complexes in Phototrophic Bacteria, Freiburg, FRG, 2–5 August 1989     

Cloning of Porcine Platelet Glycoprotein Ibα and Comparison with the Human Homolog

Glycoprotein Ib–IX–V (GPIb–IX–V) is a platelet adhesion receptor complex that initiates platelet aggregation. Glycoprotein Ibα (GPIbα) is the central component of the GPIb–IX–V complex, anchoring the complex to the cytoskeleton and harboring the binding site for von Willebrand factor (vWF). Previous studies suggest that the coagulation function in pigs differs from that in humans, especially with respect to the interaction between vWF and platelets. However, we have little knowledge about the function of porcine platelets, which is important with regard to studies of cardiovascular disease, clotting, and surgery that use pigs as animal models. To extend this information, we cloned and analyzed the porcine GPIbα sequence. Porcine GPIbα contains 1891 nucleotides and includes an open reading frame that encodes 627 amino acids. The nucleotide sequence showed 67% identity with human GPIbα, whereas the deduced amino acid sequences were 59% identical. The vWF binding domain shares the highest identity among different species, whereas the PEST domain shows variations. Evaluation of platelet function by using ristocetin-induced platelet aggregation revealed remarkably lower levels of aggregation in porcine than human platelets. According to the sequence analysis and platelet aggregation tests, we propose that the function of GPIbα, especially regarding the ristocetin–vWF–GPIbα interaction, differs between pigs and humans. This characterization of porcine GPIbα will enhance our knowledge of the porcine coagulation system.Abbreviations: GPIbα, glycoprotein Ibα, vWF, von Willebrand factorGlycoprotein (GP) Ib–IX–V is one of the major adhesive receptors expressed on the surface of circulating platelets and is essential for platelet adhesion and clot formation at sites of vascular injury.² Platelet adhesion in high-shear areas is initiated by GPIbα, a subunit of the GPIb–IX–V complex, via binding to von Willebrand factor (vWF), a multimeric adhesive protein associated with collagen in the vessel wall.^3,13,27 After GPIbα-dependent adhesion to vWF, platelets become activated and undergo cytoskeletal rearrangements associated with shape changes, spreading, and the secretion of platelet agonists that amplify the platelet aggregation and activation mediated by platelet integrin α_IIbβ₃.¹The GPIb–IX–V complex consists of 4 transmembrane subunits—GPIbα, GPIbβ, GP IX, and GP V—which are present at a ratio of 2:2:2:1.²⁶ The entire ligand-binding capacity of the GPIb–IX–V complex is situated in the N-terminal globular region (amino acids 1 through 282) of GPIbα.²⁸ Mutations in GPIbα lead to Bernard–Soulier syndrome and pseudo-von Willebrand disease.^15,24 Thrombi that cause complications in arterial thrombosis are associated with GPIb–IX–V, especially GPIbα.²¹ Because the interactions between GPIbα and its ligand are critical to the vascular processes of thrombosis and inflammation, the complex is under intense scrutiny as a potential therapeutic target.²⁹Pigs share many physiologic and anatomic similarities with humans and offer several breeding and handling advantages relative to nonhuman primates, making the pig an optimal species for preclinical experimentation. During the last several years, porcine animal models have gained a great deal of importance^23,30 in cardiovascular diseases,^6,33 ischemia–reperfusion injury,¹⁰ transplant surgery, and many other areas of biomedical research.¹⁷ In particular, the pig has been identified as an ideal cell, tissue, and organ donor for xenotransplantation. Because differences exist between species, it is necessary to take the physiologic differences between pigs and humans into account when developing animal models and when analyzing the results obtained by using these models.Our early studies revealed differences in the process of coagulation between pigs and humans.⁵ Currently we know little about which functions of platelets are conserved between species or about porcine GPIb–IX–V and its differences from the human complex. In the current study, we cloned the coding sequences of porcine GPIbα and compared its nucleotide sequence, deduced protein sequence, and 3D structure model with those of human GPIbα, focusing on important functional domains and vWF interaction sites. We also investigated the ability of porcine platelets to be agglutinated or activated when treated with ristocetin. This work represents a step toward understanding the value and limitations of the pig as a preclinical model for coagulation-related studies.     

Cloning and characterization of the bgxA gene from Erwinia chrysanthemi D1 which encodes a β-glucosidase/xylosidase enzyme

A -glucosidase/xylosidase gene from Erwinia chrysanthemi strain D1 was cloned and sequenced. This gene, named bgxA, encodes a ca. 71 kDa protein product which, following removal of the leader peptide, resulted in a ca. 69 kDa mature protein that accumulated in the periplasmic space of E. chrysanthemi strain D1 and Escherichia coli cells expressing the cloned gene. The protein exhibited both -glucosidase and -xylosidase activities but gave no detectable activity on xylan or carboxymethyl cellulose. The enzyme was classified as a type 3 glycosyl hydrolase, but was unusual in having a truncated B region at the carboxyl-terminus. Several E. chrysanthemi strains isolated from corn produced the glucosidase/xylosidase activity but not those isolated from dicot plants. However, bgxA marker exchange mutants of strain D1 were not detectably altered in virulence on corn leaves.     

What is a bona fide mating-type gene? Internuclear complementation of mat mutants in Podospora anserina

In the heterothallic ascomycete Podospora anserina, the mating-type locus is occupied by two mutually exclusive sequences termed mat+ and mat–. The mat+ sequence contains only one gene, FPR1, while the mat– sequence contains three genes: FMR1, SMR1 and SMR2. Previous studies have demonstrated that FPR1 and FMR1 are required for fertilization. Further analyses have led to the hypothesis that mat+ and mat– genes establish a mat+ and mat– nuclear identity, allowing recognition between nuclei of opposite mating type within the syncytial cells formed after fertilization. This hypothesis was based on the phenotypes of strains bearing mutations in ectopic mat genes. Here we present an analysis of mutations in resident mat– genes which suggests that, unlike FMR1 and SMR2, SMR1 is not involved in establishing nuclear identity. In fact, mutations in these two genes impair nuclear recognition, leading to uniparental progeny, while mutations in SMR1 block the sexual process, probably at a step after nuclear recognition. The nuclear identity hypothesis has also been tested through internuclear complementation tests. In these experiments, the mat– mutants were crossed with a mat+ strain carrying the wild-type mat– genes. Our rationale was that internuclear complementation should not be possible for nuclear identity genes: the relevant genes should show nucleus-restricted expression, and diffusion of their products to other nuclei should not occur. This test confirmed that SMR1 is not a bona fide mat gene since it can fulfill its function whatever its location, in either a mat− or a mat+ nucleus, and even when present in both nuclei. SMR2, but not FMR1, behaves like a nuclear identity gene with respect to internuclear complementation tests. A model is proposed that tentatively explains the ambiguous behaviour of the FMR1 gene and clarifies the respective functions of the three mat– proteins. Received: 15 October 1996 / Accepted: 25 April 1997     

Obtaining and characterization of “Holospora curviuscula” and Holospora obtusa, bacterial symbionts of the macronuclei of Paramecium bursaria and Paramecium caudatum

The symbionts of the macronuclei of Paramecium bursaria and P. caudatum, “Holospora curviuscula” 02AZ16 and H. obtusa 88Ti, respectively, were obtained and investigated. The 16S rDNA nucleotide sequences of “Holospora curviuscula” were obtained for the first time. The differences in 16S rDNA (3.4%) suggest their classification within the genus Holospora. Molecular phylogenetic analysis of the symbionts revealed that these intranuclear symbionts of the ciliates belonged to the order Rickettsiales, forming within a compact cluster of related species.     

Endosperm-specific demethylation and activation of specific alleles of α-tubulin genes of Zea mays L.

We have investigated the methylation status of the -tubulin genes, and the degree of accumulation of their mRNAs in endosperm, embryo and seedling tissues of Zea mays L. We have found that many of the -tubulin genes are differentially demethylated in the endosperm relative to the embryo and seedling. However, only for tub2 and tub4 could a correlation between DNA demethylation and increased RNA accumulation be detected. By analyzing the inbred lines W64A and A69Y and their reciprocal crosses, we have also identified in the endosperm two -tubulin genes, tub3 and tub4, that are differentially demethylated if transmitted by the maternal germline, but that remain hypermethylated when transmitted by the paternal germline.     

How to measure the thermal death of Daphnia? A comparison of different heat tests and effects of heat injury

1. 1. The thermal death point of the water flea Daphnia magna (age < 24 h, cultured at 20°C) varied considerably depending on the method used. The median lethal dose (LD₅₀), induced by an acute 24 h heat exposure was 34.8°C. It was 37.8°C following a thermal shock for 15 min, and it was 39.4°C when a continuous temperature increase (0.2°C/min) was used.

2. 2. Heat death temperature of daphnids was related to the acute heating rate.

3. 3. The logarithm of median lethal time (Lt₅₀) of daphnids, kept at a constant high temperature, had a linear relationship to temperature (°C) within the range of 28.0–38.5°C.

4. 4. The mortality after heat exposure increased with recovery time at 20°C for up to 3 days.

5. 5. The animals which survived the heat exposure produced eggs and offspring. Furthermore, no time lag in development between the control and heat exposure group was observed.

6. 6. The comparison of the results made by different heat tests categorized to Methods 1 and 2 by Precht (1973), for use in the determination of lethal limits of ectotherms, has been discussed.

     

DnaK-dependent ribosome biogenesis in Escherichia coli? : competition for dominance between the alleles dnaK756 and dnaK ?+

The Escherichia coli chaperone DnaK is vital for many cellular functions, including ribosome biogenesis at high temperature. Thus, the dnaK756-ts (λ ^R ) mutant, at the non-permissive temperature, is inhibited at a late stage of ribosome assembly, yielding 21S, 32S and 45S precursor particles. This defect, unlike the λ resistance and thermosensitivity phenotypes, is not complemented by lysogenisation with a transducing phage λ dnaK ⁺ bearing the wild-type dnaK gene. However this dominant phenotype becomes recessive when dnaK ⁺ is expressed from a medium-copy-number plasmid. On the other hand, an excess of DnaK causes an unexpected dominant-lethal effect of the dnaK756 allele near non-permissive temperatures. This interplay between the dnaK ⁺ and dnaK756 alleles supports the idea of that DnaK oligomers form in the cell. Received: 28 April 1998 / Accepted: 24 July 1998     

Cloning and characterization of the immunity region of phage ?80

Summary The immunity region of phage 80 has been localized. It codes for at least three proteins: a protein of 34 kDa which has the biological properties of the phage repressor, and two other proteins of 9 kDa and 18 kDa which are the first proteins on the rightward operon. These two proteins are negatively regulated by the 34 kDa protein at a divergent promoter site. By position analogy with phage , but not by its biological activity, the 9 kDa protein could be the cro roduct. The 18 kDa protein is able to block totally UV induction of phage 80.     

大豆microRNA基因GmMIR160A负调控植物叶片衰老进程

:叶片衰老是受内外多种因子影响的遗传发育进程.生长素、细胞分裂素和乙烯等多种植物激素是调 控叶片衰老的重要内部因子,它们通过长或短距离运输形成叶片组织内特定的区域分布和浓度梯度,从而直 接或间接参与植物叶片衰老过程.分子遗传学表明,细胞分裂素和乙烯分别是叶片衰老的抑制子和正调节 子,而生长素如何参与叶片衰老的分子机制目前还不清晰.植物体内成熟小分子RNA 由小RNA 基因转录 并通过特定酶加工形成的２１~２３bp的双链RNA分子.这些小分子通过不完全配对方式抑制其靶基因转录 和/或表达,参与植物生长发育多个过程,然而这类小RNA 分子如何调控植物叶片衰老发育过程目前则还鲜 有报告.大豆是重要的油料作物,具有典型的单次结实性衰老特征.研究大豆叶片衰老具有重要的科学意义 和深远的应用价值.该文采用实时荧光定量PCR(qPCR)技术分析大豆(Glycinemax)microRNA基因Gm- MIR１６０A 的表达模式,发现大豆第一复叶中GmMIR１６０A 表达受外源生长素和黑暗处理的诱导,暗示该基 因是生长素快速响应的叶片衰老相关基因.为进一步探究GmMIR１６０A 在大豆叶片发育中的功能,构建了 肾上腺皮质激素(Glucocorticoid,GR)类似物地塞米松(Dexamethasone,DEX)诱导表达GmMIR１６０A 双元表 达载体并通过农杆菌介导的子叶节方法转化野生型大豆.通过抗性筛选和基因组PCR 鉴定并结合表型分 析,共获得了４株诱导表达的稳定遗传转基因植株(株系OXＧ３、OXＧ５、OXＧ７和OXＧ８).GmMIR１６０A 过表达 植株根、茎、叶、花和果实在形态学上与野生型相比无显著差异,但叶片的叶绿素含量增加、最大光量子效率 (Fv/Fm)增强.进一步分子分析发现,转基因大豆叶片中GmARFs 和衰老标记基因(GmCYSP１)表达明显下 降,表明大豆Gma-miR１６０通过抑制靶基因GmARFs 的表达来负调控植物叶片的衰老进程.该文揭示了生 长素通过小分子RNA调控叶片发育一条新途径,为研究植物激素调控植物叶片衰老提供了新的思路.     

转新型抗虫基因Vip3A棉花新种质的创制

该研究构建植物表达载体pBin438 Vip3A,通过农杆菌介导法转化棉花品种‘冀合713’,将新型抗虫基因Vip3A导入到棉花植株,创制对棉铃虫抗性的转基因棉花新种质。结果表明：(1)PCR检测Vip3A基因已经导入到棉花基因组中且能够稳定遗传。(2)室内抗虫性鉴定表明,与对照相比转基因植株对棉铃虫的抗性显著提高,并获得2株高抗和3株抗棉铃虫的转Vip3A基因株系。(3)Southern blotting结果显示,转基因株系BV01为单拷贝。(4)Elisa检测表明,外源Vip3A基因在BV01的根、茎、叶、花、种子中都有表达,在叶片中的Vip3A蛋白表达为苗期>蕾期>花期>铃期>吐絮期。该研究创制了新型抗虫转基因棉花材料,为培育棉花新型抗虫品种提供了种质资源。     

Molecular Cloning and Sequence Analysis of PGC-1α cDNA in Tibetan Antelope

以藏羚羊(Pantholops hodgsonii)及同海拔分布的藏系绵羊(Tibetan Sheep)的心肌组织为材料,提取总RNA,利用逆转录聚合酶链反应(RT-PCR)技术扩增出过氧化物酶体增生物激活受体γ辅激活因子-1α(PGC-1α)的基因编码区cDNA片段,与载体连接构建重组质粒,经转化、扩增培养、鉴定后测序.利用生物信息学方法分析显示,藏羚羊和藏系绵羊的PGC-1α基因编码区长度均为2 349 bp,编码797个氨基酸(GenBank登录号分别为:JF449959和JF449960);与其他脊椎动物PGC-1α基因的核苷酸及氨基酸序列相似性达到90％以上;其包含RNA/DNA结合位点、RNA识别基序(RRM)、与核呼吸因子1( NRF-1)及肌细胞增强因子2C(MEF2C)相互作用的区域、富含丝氨酸/精氨酸的结构域、负调节功能结构域、LXXLL模体以及TPPTTPP和DHDYCQ两个保守序列,14个氨基酸差异性位点位于以上部分功能结构域中;此外,磷酸化位点的预测提示藏羚羊可能存在一个潜在的蛋白激酶G的磷酸化位点(第329位的苏氨酸).本研究成功克隆出了藏羚羊PGC-1α基因的编码区序列,为从能量代谢角度深入探讨藏羚羊适应高原的分子生物学机制提供了新的思路.     

In?vitro evaluation of the effect of the nematophagous fungi Duddingtonia flagrans , Monacrosporium sinense and Pochonia chlamydosporia on Schistosoma mansoni eggs

The in vitro effect of four isolates of the nematophagous fungi Duddingtonia flagrans (AC 001), Monacrosporium sinense (SF 53) and Pochonia chlamydosporia (VC 1 and VC 4) on eggs of Schistosoma mansoni was examined. One thousand S. mansoni eggs were plated on 2% water–agar with the grown isolates and control without fungus. After 7, 14 and 21 days, the eggs were removed and classified according to the following parameters: type 1, lytic effect without morphological damage to eggshell; type 2, lytic effect with morphological alteration of embryo and eggshell; and type 3, lytic effect with morphological alteration of embryo and eggshell, besides hyphal penetration and internal egg colonization. Significant differences (P < 0.01) were found among the studied fungal isolates for ovicidal activity, confirming type 3 effect for the isolates VC 1 and VC 4, which characterizes the ovicidal activity of a fungus. Type 3 effect was only found for P. chlamydosporia (VC 1 and VC 4) with 26.6 and 17.2%, 25.6 and 22.6%, 27.4 and 23.9% in the 7, 14 and 21 days respectively (P < 0.01). P. chlamydosporia can thus be a potential biological control agent for S. mansoni eggs.     

Comparative study (AFLP and morphology) of three species of Prosopis of the Section Algarobia: P. juliflora, P. pallida, and P. limensis. Evidence for resolution of the “P. pallida–P. juliflora complex”

The problems of delimitation of species of Prosopis originate from the few morphological discontinuities which exist among some of them; some, however, originated as a result of wide distribution of germplasm without proper knowledge of the species, in particular, much material catalogued as P. juliflora, but being of other species, was distributed for reforestation projects worldwide. This work tests the morphological results obtained for P. pallida and P. limensis of the Peruvian–Ecuadorian coast and for P. juliflora of the Caribbean Basin of Colombia and Venezuela utilizing a study of AFLPs and a study of the morphology of plantlets developed in a conventional garden study. The phenogram obtained for the AFLPs demonstrates each of the three species to be a well differentiated cluster and the molecular variance between them is significantly greater than the variance within each species. Study of the plantlets also indicates statistically significant differences for four morphological characters between P. juliflora and the other two species (P. pallida and P. limensis). These results, in addition to the morphological differentiation evident between adult plants of P. pallida and P. limensis and the clear separation of these two species from P. juliflora, corroborate the genetic identity of the three taxa analyzed.