Regional-Scale Drivers of Forest Structure and Function in Northwestern Amazonia

Field studies in Amazonia have found a relationship at continental scales between soil fertility and broad trends in forest structure and function. Little is known at regional scales, however, about how discrete patterns in forest structure or functional attributes map onto underlying edaphic or geological patterns. We collected airborne LiDAR (Light Detection and Ranging) data and VSWIR (Visible to Shortwave Infrared) imaging spectroscopy measurements over 600 km² of northwestern Amazonian lowland forests. We also established 83 inventories of plant species composition and soil properties, distributed between two widespread geological formations. Using these data, we mapped forest structure and canopy reflectance, and compared them to patterns in plant species composition, soils, and underlying geology. We found that variations in soils and species composition explained up to 70% of variation in canopy height, and corresponded to profound changes in forest vertical profiles. We further found that soils and plant species composition explained more than 90% of the variation in canopy reflectance as measured by imaging spectroscopy, indicating edaphic and compositional control of canopy chemical properties. We last found that soils explained between 30% and 70% of the variation in gap frequency in these forests, depending on the height threshold used to define gaps. Our findings indicate that a relatively small number of edaphic and compositional variables, corresponding to underlying geology, may be responsible for variations in canopy structure and chemistry over large expanses of Amazonian forest.     

Dynamics, patterns and causes of fires in Northwestern Amazonia

According to recent studies, two widespread droughts occurred in the Amazon basin, one during 2005 and one during 2010. The drought increased the prevalence of climate-driven fires over most of the basin. Given the importance of human-atmosphere-vegetation interactions in tropical rainforests, these events have generated concerns over the vulnerability of this area to climate change. This paper focuses on one of the wettest areas of the basin, Northwestern Amazonia, where the interactions between the climate and fires are much weaker and where little is known about the anthropogenic drivers of fires. We have assessed the response of fires to climate over a ten-year period, and analysed the socio-economic and demographic determinants of fire occurrence. The patterns of fires and climate and their linkages in Northwestern Amazonia differ from the enhanced fire response to climate variation observed in the rest of Amazonia. The highest number of recorded fires in Northwestern Amazonia occurred in 2004 and 2007, and this did not coincide with the periods of extreme drought experienced in Amazonia in 2005 and 2010. Rather, during those years, Northwestern Amazonia experienced a relatively small numbers of fire hotspots. We have shown that fire occurrence correlated well with deforestation and was determined by anthropogenic drivers, mainly small-scale agriculture, cattle ranching (i.e., pastures) and active agricultural frontiers (including illegal crops). Thus, the particular climatic conditions for air convergence and rainfall created by proximity to the Andes, coupled with the presence of one of the most active colonisation fronts in the region, make this region differently affected by the general drought-induced fire patterns experienced by the rest of the Amazon. Moreover, the results suggest that, even in this wet region, humans are able to modify the frequency of fires and impact these historically well preserved forests.     

The Dynamics and Social Organization of Tropical Deforestation in Northwest Ecuador, 1983-1995

This paper examines the regional dynamics and natural resource use strategies related to the deforestation of tropical rain forests west of the Ecuadorian Andes for the period 1983–1995. Research was based on regional level analysis of remotely sensed and secondary data and local level analysis of the ways local populations use the resources at their disposal. The process observed departs significantly from what has been described in the literature for Latin America and should be seen as a window into a broader environmental process occurring in most tropical forests on the Pacific side of northern South America. Deforestation in the Northwest Ecuador is primarily related to a complex productive structure, made up a countless number of timber producers and middlemen, ranging from fully informal to fully formal, and from small scale to large scale. A key finding is that local traditional populations play a critical role through productive coalitions between small primary producers and large timber firms. These have been shaped by the articulation of local conditions with external markets, settlement processes, and the convergence of local populations in an economic system which relies on the unsustainable exploitation of natural resources. If deforestation rates in Northwest Ecuador remain at current levels, forests in the region will disappear completely within 30–35 years, a fate that is likely to be the same for most tropical rain forests west of the tropical Andes.     

Seed Dynamics of Early and Late Successional Tree Species in Tropical Abandoned Pastures: Seed Burial as a Way of Evading Predation

We explored different treatments to enhance the probability of sowed seeds of two early successional (ES, Cecropia obtusifolia and Ochroma pyramidale) and two late successional (LS, Brosimum costaricanum and Dialium guianense) species to escape predation and germinate in abandoned cattle‐raising pasture fields in Southeastern Mexico. ES species were sown in groups of 50 seeds under three treatments: invertebrate exclusion, burial, and exposition to seedeaters. LS species were sown in groups of 10 seeds under three treatments: vertebrate exclusion, burial, and exposition to seedeaters. We registered seed predation and germination 2, 4, 8, 16, 32, and 64 days after the initial sowing. Overall, ES showed higher predation rates (mean ± SE = 0.45 ± 0.07 seed seed^?1 day^?1; n = 3) than LS species (0.09 ± 0.02 seed seed^?1 day^?1). Cecropia obtusifolia was completely predated in all treatments after 8 days. Burial and exclusion treatments reduced final predation in circa 6% for O. pyramidale, relative to that of exposed seeds (85% after 8 days); most germination occurred in buried seeds (3.7%). In B. costaricanum, burial enabled germination by 10%; exposed and excluded seeds were removed 100%. Dialium guianense showed 12% germination in buried seeds and circa 20% of the seeds were not removed after 64 days. Direct sowing would be a recommended rainforest restoration practice for species with relatively large seeds if deposited in groups and buried. Studies which address variation across numerous sites are necessary in order to generate more consistent seed predation patterns and rainforest restoration principles in tropical pastures.     

Fire, climate change and biodiversity in Amazonia: a Late-Holocene perspective

Fire is an important and arguably unnatural component of many wet Amazonian and Andean forest systems. Soil charcoal has been used to infer widespread human use of landscapes prior to European Conquest. An analysis of Amazonian soil carbon records reveals that the records have distinct spatial and temporal patterns, suggesting that either fires were only set in moderately seasonal areas of Amazonia or that strongly seasonal and aseasonal areas are undersampled. Synthesizing data from 300 charcoal records, an age–frequency diagram reveals peaks of fire apparently coinciding with some periods of very strong El Niño activity. However, the El Niño record does not always provide an accurate prediction of fire timing, and a better match is found in the record of insolation minima. After the time of European contact, fires became much scarcer within Amazonia. In both the Amazonia and the Andes, modern fire pattern is strongly allied to human activity. On the flank of the Andes, forests that have never burned are being eroded by fire spreading downslope from grasslands. Species of these same forests are being forced to migrate upslope due to warming and will encounter a firm artificial fire boundary of human activity.     

Influence of Deforestation,Logging, and Fire on Malaria in the Brazilian Amazon

Malaria is a significant public health threat in the Brazilian Amazon. Previous research has shown that deforestation creates breeding sites for the main malaria vector in Brazil, Anopheles darlingi, but the influence of selective logging, forest fires, and road construction on malaria risk has not been assessed. To understand these impacts, we constructed a negative binomial model of malaria counts at the municipality level controlling for human population and social and environmental risk factors. Both paved and unpaved roadways and fire zones in a municipality increased malaria risk. Within the timber production states where 90% of deforestation has occurred, compared with areas without selective logging, municipalities where 0–7% of the remaining forests were selectively logged had the highest malaria risk (1.72, 95% CI 1.18–2.51), and areas with higher rates of selective logging had the lowest risk (0.39, 95% CI 0.23–0.67). We show that roads, forest fires, and selective logging are previously unrecognized risk factors for malaria in the Brazilian Amazon and highlight the need for regulation and monitoring of sub-canopy forest disturbance.     

Resilience and Thresholds in Savannas: Nitrogen and Fire as Drivers and Responders of Vegetation Transition

Resilience theory suggests that ecosystems can persist for long periods, before changing rapidly to a new vegetation phase. Transition between phases occurs when ecological thresholds have been crossed, and is followed by a reorganization of biotic and environmental interactions, leading to the emergence of a new vegetation phase or quasi-stable state. Savannas are dynamic, complex systems in which fire, herbivory, water and nutrient availability interact to determine tree abundance. Phase and transition has been observed in savannas, but the role of these different possible drivers is not always clear. In this study, our objectives were to identify phase and transition in the fossil pollen record, and then to explore the role of nitrogen and fire in these transitions using δ¹⁵N isotopes and charcoal abundance. We present palaeoenvironmental data from the Kruger National Park, South Africa, which show transition between grassland and savanna phases. Our results show transition at the end of the ninth century A.D. from a nutrient- and herbivore-limited grazing lawn, in which fire was absent and C₄ grasses were the dominant and competitively superior plant form, to a water-, fire- and herbivory-limited semi-arid savanna, in which C₄ grasses and C₃ trees and shrubs co-existed. The data accord with theoretical frameworks that predict that variability in ecosystems clusters in regions of higher probability space, interspersed by rapid transitions between these phases. The data are also consistent with the idea that phase transitions involve switching between different dominant driving processes or limiting factors.     

The Importance of Defining 'Forest': Tropical Forest Degradation, Deforestation, Long-term Phase Shifts, and Further Transitions

While research continues on the causes, consequences, and rates of deforestation and forest degradation in the tropics, there is little agreement about what exactly is being lost, what we want back, and to whom the 'we' refers. Particularly unsettling is that many analyses and well-intended actions are implemented in fogs of ambiguity surrounding definitions of the term 'forest'—a problem that is not solely semantic; with development of markets for biomass carbon, vegetation classification exercises take on new relevance. For example, according to the basic implementation guidelines of the Kyoto Protocol, closed canopy natural forest could be replaced by monoclonal plantations of genetically engineered exotic tree species and no deforestation would have occurred. Following these same guidelines, carbon credits for afforestation could be available for planting trees in species-rich savannas; these new plantations would count towards a country moving towards the 'forest transition,' the point at which there is no net 'forest' loss. Such obvious conflicts between biodiversity conservation and carbon sequestration might be avoided if 'forest' was clearly defined and if other vegetation types and other ecosystem values were explicitly recognized. While acknowledging that no one approach to vegetation classification is likely to satisfy all users at all scales, we present an approach that recognizes the importance of species composition, reflects the utility of land-cover characteristics that are identifiable via remote sensing, and acknowledges that many sorts of forest degradation do not reduce carbon stocks ( e.g ., defaunation) or canopy cover ( e.g ., over-harvesting of understory nontimber forest products).     

Extracellular Enzyme Activities and Carbon Chemistry as Drivers of Tropical Plant Litter Decomposition

Litter quality parameters such as nitrogen and lignin content correlate with decomposition rates at coarse scales, but fine‐scale mechanisms driving litter decomposition have proven more difficult to generalize. One potentially important driver of decomposition is the activity of extracellular enzymes that catalyze the degradation of complex compounds present in litter. To address the importance of this mechanism, we collected 15 Hawaiian plant litter types and decomposed them in fertilized and control plots for up to two years. We measured litter nutrient content and carbon chemistry prior to decomposition, as well as extracellular enzyme activities, mass loss, and litter nutrient content over time. We found that water‐soluble carbon content, cellobiohydrolase activities, and polyphenol oxidase activities were significantly correlated with mass loss. Enzyme activities and decomposition rate constants both varied significantly by litter type, and fertilization increased mass loss rates in five litter types. Some litter types that decayed faster under fertilization also showed time‐dependent increases in carbon‐degrading enzyme activities, but others decayed faster independent of enzyme changes. These results suggest that extracellular enzyme activities partially determine litter decomposition rates, but high soluble carbon content may circumvent the requirement for enzyme‐catalyzed decomposition.     

Forest Regeneration in a Chronosequence of Tropical Abandoned Pastures: Implications for Restoration Ecology

During the mid‐1900s, most of the island of Puerto Rico was deforested, but a shift in the economy from agriculture to small industry beginning in the 1950s resulted in the abandonment of agricultural lands and recovery of secondary forest. This unique history provides an excellent opportunity to study secondary forest succession and suggest strategies for tropical forest restoration. To determine the pattern of secondary succession, we describe the woody vegetation in 71 abandoned pastures and forest sites in four regions of Puerto Rico. The density, basal area, aboveground biomass, and species richness of the secondary forest sites were similar to those of the old growth forest sites (>80 yr) after approximately 40 years. The dominant species that colonized recently abandoned pastures occurred over a broad elevational range and are widespread in the neotropics. The species richness of Puerto Rican secondary forests recovered rapidly, but the species composition was quite different in comparison with old growth forest sites, suggesting that enrichment planting will be necessary to restore the original composition. Exotic species were some of the most abundant species in the secondary forest, but their long‐term impact depended on life history characteristics of each species. These data demonstrate that one restoration strategy for tropical forest in abandoned pastures is simply to protect the areas from fire, and allow natural regeneration to produce secondary forest. This strategy will be most effective if remnant forest (i.e., seed sources) still exist in the landscape and soils have not been highly degraded. Patterns of forest recovery also suggest strategies for accelerating natural recovery by planting a suite of generalist species that are common in recently abandoned pastures in Puerto Rico and throughout much of the neotropics.     

Vegetation Response and Landscape Dynamics of Indian Summer Monsoon Variations during Holocene: An Eco-Geomorphological Appraisal of Tropical Evergreen Forest Subfossil Logs

The high rainfall and low sea level during Early Holocene had a significant impact on the development and sustenance of dense forest and swamp-marsh cover along the southwest coast of India. This heavy rainfall flooded the coastal plains, forest flourishing in the abandoned river channels and other low-lying areas in midland.The coastline and other areas in lowland of southwestern India supply sufficient evidence of tree trunks of wet evergreen forests getting buried during the Holocene period under varying thickness of clay, silty-clay and even in sand sequences. This preserved subfossil log assemblage forms an excellent proxy for eco-geomorphological and palaeoclimate appraisal reported hitherto from Indian subcontinent, and complements the available palynological data. The bulk of the subfossil logs and partially carbonized wood remains have yielded age prior to the Holocene transgression of 6.5 k yrs BP, suggesting therein that flooding due to heavy rainfall drowned the forest cover, even extending to parts of the present shelf. These preserved logs represent a unique palaeoenvironmental database as they contain observable cellular structure. Some of them can even be compared to modern analogues. As these woods belong to the Late Pleistocene and Holocene, they form a valuable source of climate data that alleviates the lack of contemporaneous meteorological records. These palaeoforests along with pollen proxies depict the warmer environment in this region, which is consistent with a Mid Holocene Thermal Maximum often referred to as Holocene Climate Optimum. Thus, the subfossil logs of tropical evergreen forests constitute new indices of Asian palaeomonsoon, while their occurrence and preservation are attributed to eco-geomorphology and hydrological regimes associated with the intensified Asian Summer Monsoon, as recorded elsewhere.     

Review of Climate,Landscape, and Viral Genetics as Drivers of the Japanese Encephalitis Virus Ecology

The Japanese encephalitis virus (JEV), an arthropod-born Flavivirus, is the major cause of viral encephalitis, responsible for 10,000–15,000 deaths each year, yet is a neglected tropical disease. Since the JEV distribution area has been large and continuously extending toward new Asian and Australasian regions, it is considered an emerging and reemerging pathogen. Despite large effective immunization campaigns, Japanese encephalitis remains a disease of global health concern. JEV zoonotic transmission cycles may be either wild or domestic: the first involves wading birds as wild amplifying hosts; the second involves pigs as the main domestic amplifying hosts. Culex mosquito species, especially Cx. tritaeniorhynchus, are the main competent vectors. Although five JEV genotypes circulate, neither clear-cut genotype-phenotype relationship nor clear variations in genotype fitness to hosts or vectors have been identified. Instead, the molecular epidemiology appears highly dependent on vectors, hosts'' biology, and on a set of environmental factors. At global scale, climate, land cover, and land use, otherwise strongly dependent on human activities, affect the abundance of JEV vectors, and of wild and domestic hosts. Chiefly, the increase of rice-cultivated surface, intensively used by wading birds, and of pig production in Asia has provided a high availability of resources to mosquito vectors, enhancing the JEV maintenance, amplification, and transmission. At fine scale, the characteristics (density, size, spatial arrangement) of three landscape elements (paddy fields, pig farms, human habitations) facilitate or impede movement of vectors, then determine how the JEV interacts with hosts and vectors and ultimately the infection risk to humans. If the JEV is introduced in a favorable landscape, either by live infected animals or by vectors, then the virus can emerge and become a major threat for human health. Multidisciplinary research is essential to shed light on the biological mechanisms involved in the emergence, spread, reemergence, and genotypic changes of JEV.     

Cassava (Manihot esculenta Crantz), Cyanogenic Potential, and Predation in Northwestern Amazonia: The Tukanoan Perspective

The Tukanoans of northwestern Amazonia cultivate high-cyanogenic potential cassava, which provides 80% of their dietary energy. In an effort to understand why the Tukanoans cultivate primarily high-rather than low-cyanogenic potential cassava, which requires far less processing before consumption, this paper seeks to determine whether the Tukanoans discern a difference in levels of predation on high-and low-cyanogenic potential cassava. Given the potential protection afforded by high-cyanogenic potential, it was hypothesized that the Tukanoans would report higher predation upon low-cyanogenic potential cassava in comparison to high-cyanogenic potential cassava. Both unstructured interviews and pile-sort exercises were conducted to address this question. The unstructured interviews provide some support for the hypothesis, while the pile-sort interviews did not support the hypothesis. These data demonstrate that while the Tukanoans are cognizant of differences in predation on different cassava cultivars, resistance to predation may not be a characteristic of paramount concern in cultivar selection.     

Early Regeneration of Tropical Dry Forest from Abandoned Pastures: Contrasting Chronosequence and Dynamic Approaches

Old field secondary succession of tropical dry forests (TDFs) is poorly understood, particularly regarding the dynamics of seedlings, saplings, and sprouts (regenerative communities). We used chronosequence and dynamic approaches to: (1) document successional trajectories of regenerative communities during the first dozen years of regeneration in abandoned pastures at Chamela, Mexico; (2) test the usefulness of chronosequences to predict the dynamics of regenerative communities along time; and (3) assess the influence of surrounding forest matrix, stand density, and understory light availability (in the rainy season) as driving factors of such dynamics. More than 1000 plants and 95 species of shrubs and trees 10–100 cm tall were monitored between 2004 and 2007 in nine abandoned pastures (0–12 yr since abandonment) and two old‐growth forest (OGF) sites; gain and loss rates of plants, species, and plant cover were obtained. Chronosequence predicted a rapid and asymptotic increase of plant density, species density, and plant cover toward the OGF values. Such prediction did not match with dynamic data that showed negative or neutral net community rates of change, independently of fallow age. Recruitment and species gain rates increased with the amount surrounding forest matrix. No other effect of the explored factors was detected. Strong rainfall shortenings could be responsible for the high loss and low gain rates of plants and species recorded in most sites. We highlight the critical role of supra‐annual rainfall variability on the dynamics of TDF regenerative communities and the poor predictive value of chronosequences in forest systems subjected to strong environmental temporal variation. Abstract in Spanish is available at http://www.blackwell‐synergy.com/loi/btp .     

Subtle Land‐Use Change and Tropical Biodiversity: Dung Beetle Communities in Cerrado Grasslands and Exotic Pastures

Although many tropical savannas are highly influenced by humans, the patterns of biodiversity loss in these systems remain poorly understood. In particular, the biodiversity consequences of replacing native grasslands with exotic pastures have not been studied. Here we examine how the conversion of the native savanna grasslands affects dung beetle communities. Our study was conducted in 14 native (grassland: campo limpo), and 21 exotic (Urochloa spp. monoculture) pastures in Carrancas, Minas Gerais, Brazil. We collected 4996 dung beetle individuals from 66 species: 3139 individuals from 50 species in native pastures and 1857 individuals from 55 species in the exotic pastures. Exotic pastures had lower dung beetle richness, abundance and biomass than native pastures. Species composition between the two pasture types was significantly different and exotic pastures were dominated by few abundant species. Indicator species analysis detected 16 species indicators of native pastures and three of exotic pastures, according to relative abundance and frequency in each pasture system. Our results show that the conversion of native pastures to exotic pastures leads to a predictable loss of local species richness, increasing dominance and changes in species composition. These results highlight the importance of maintaining native pastures in the Cerrado agro‐pastoral landscape. Abstract in Portuguese is available at http://www.blackwell‐synergy.com/loi/btp .     

The Local Perception of Tropical Deforestation and its Relation to Conservation Policies in Los Tuxtlas Biosphere Reserve,Mexico

We examine the ways both deforestation and conservation are viewed by people of two villages with different ethnic composition located within the biosphere reserve of Los Tuxtlas, Mexico. The rain forest is considered to be important, since it provides many resources and environmental benefits. Residents do notice forest degradation, although deforestation is not one of their major concerns. In the mestizo village, 65% of interviewees indicated they felt responsible for deforestation, while only 30% of indigenous villagers felt the same. In both communities, nearly half the respondents see themselves as powerless to take actions to preserve the forest. We analyzed the management plan for the reserve in light of our results, and found authorities’ perceptions differ from that of local communities. This study emphasizes the lack of factual data and common goals for biodiversity conservation. Our work points to the urgency to build conservation efforts that involve the different social actors, who diverge in interests and views, particularly in countries like Mexico, where rich biodiversity regions are also broadly inhabited.