Reciprocal Regulation of Endocytosis and Metabolism

The cellular uptake of many nutrients and micronutrients governs both their cellular availability and their systemic homeostasis. The cellular rate of nutrient or ion uptake (e.g., glucose, Fe³⁺, K⁺) or efflux (e.g., Na⁺) is governed by a complement of membrane transporters and receptors that show dynamic localization at both the plasma membrane and defined intracellular membrane compartments. Regulation of the rate and mechanism of endocytosis controls the amounts of these proteins on the cell surface, which in many cases determines nutrient uptake or secretion. Moreover, the metabolic action of diverse hormones is initiated upon binding to surface receptors that then undergo regulated endocytosis and show distinct signaling patterns once internalized. Here, we examine how the endocytosis of nutrient transporters and carriers as well as signaling receptors governs cellular metabolism and thereby systemic (whole-body) metabolite homeostasis.Interactions between the cell and its environment obligatorily involve events at the plasma membrane. Cell-surface proteins mediate nutrient uptake, product release, and the sensing of environmental changes, including signals from other cells. Appropriate sensing and response to extracellular cues is essential for the individual cell’s survival and for the coordinated cellular behavior in multicellular organisms. Accordingly, maintenance and dynamics of membrane proteins are fundamental mechanisms of cellular homeostasis and survival.Most plasma membrane proteins are in defined equilibria with intracellular endosomal compartments, such that the amount of a given protein at the plasma membrane is determined by the balance of its endocytosis and its recycling back to the cell surface from endosomes and other intracellular compartments (Fig. 1). Changes in the kinetics of membrane protein traffic acutely affect the levels of individual proteins at the cell surface and thereby impact how cells intake nutrients, sense the environment, and respond to external cues.Open in a separate windowFigure 1.Dynamic regulation of the cell-surface content of membrane proteins. Integral membrane proteins found at the cell surface are dynamically localized to the plasma membrane. The amount of any of these proteins at the cell surface is the result of the balance of exocytosis or recycling of vesicles containing that protein from intracellular membrane compartments and the endocytosis of the protein from the cell surface. Regulation of either the rate of exocytosis or endocytosis results in alteration of the cell-surface content of a given protein.Selective molecular mechanisms trigger traffic of plasma membrane proteins through endomembranes. Among them, ubiquitination and phosphorylation stand out as they can directly target the cargo proteins. Ubiquitination is the covalent attachment of the 76-amino acid polypeptide ubiquitin to the ε-amino group of specific lysine residues (reviewed by Miranda and Sorkin 2007; and see also Piper et al. 2014). Ubiquitination of cell-surface proteins is the principal mechanism of control of endocytosis in yeast (MacGurn et al. 2012), whereas in mammals, additional molecular mechanisms regulate the endocytosis of cell-surface proteins, including alterations in conformation that impact interaction with other proteins, and as mentioned, phosphorylation. Each of these modifications can either enhance or reduce the rates internalization, recycling, or degradation of specific proteins, highlighting the complexity of the regulation of endomembrane traffic. The intricate mechanisms that underlie the reciprocal regulation of endocytosis and metabolism are beginning to be understood. Here we discuss the endocytosis mechanisms in the regulation of cellular intake or efflux of iron, cholesterol, Na⁺, and glucose, and in the regulation of receptor signaling relevant to metabolism.     

Lattice Models for Protein Organization throughout Thylakoid Membrane Stacks

Proteins in photosynthetic membranes can organize into patterned arrays that span the membrane’s lateral size. Attractions between proteins in different layers of a membrane stack can play a key role in this ordering, as was suggested by microscopy and fluorescence spectroscopy and demonstrated by computer simulations of a coarse-grained model. The architecture of thylakoid membranes, however, also provides opportunities for interlayer interactions that instead disfavor the high protein densities of ordered arrangements. Here, we explore the interplay between these opposing driving forces and, in particular, the phase transitions that emerge in the periodic geometry of stacked thylakoid membrane disks. We propose a lattice model that roughly accounts for proteins’ attraction within a layer and across the stromal gap, steric repulsion across the lumenal gap, and regulation of protein density by exchange with the stroma lamellae. Mean-field analysis and computer simulation reveal rich phase behavior for this simple model, featuring a broken-symmetry striped phase that is disrupted at both high and low extremes of chemical potential. The resulting sensitivity of microscopic protein arrangement to the thylakoid’s mesoscale vertical structure raises intriguing possibilities for regulation of photosynthetic function.     

Chloroplast Chaperonin-Mediated Targeting of a Thylakoid Membrane Protein

Posttranslational protein targeting requires chaperone assistance to direct insertion-competent proteins to integration pathways. Chloroplasts integrate nearly all thylakoid transmembrane proteins posttranslationally, but mechanisms in the stroma that assist their insertion remain largely undefined. Here, we investigated how the chloroplast chaperonin (Cpn60) facilitated the thylakoid integration of Plastidic type I signal peptidase 1 (Plsp1) using in vitro targeting assays. Cpn60 bound Plsp1 in the stroma. In isolated chloroplasts, the membrane integration of imported Plsp1 correlated with its dissociation from Cpn60. When the Plsp1 residues that interacted with Cpn60 were removed, Plsp1 did not integrate into the membrane. These results suggested Cpn60 was an intermediate in thylakoid targeting of Plsp1. In isolated thylakoids, the integration of Plsp1 decreased when Cpn60 was present in excess of cpSecA1, the stromal motor of the cpSec1 translocon that inserts unfolded Plsp1 into the thylakoid. An excess of cpSecA1 favored integration. Introducing Cpn60’s obligate substrate RbcL displaced Cpn60-bound Plsp1; then, the released Plsp1 exhibited increased accessibility to cpSec1. These in vitro targeting experiments support a model in which Cpn60 captures and then releases insertion-competent Plsp1, whereas cpSecA1 recognizes free Plsp1 for integration. Thylakoid transmembrane proteins in the stroma can interact with Cpn60 to shield themselves from the aqueous environment.     

类囊体膜蛋白质磷酸酶的研究进展

光合作用是地球上最重要的生命活动过程之一。近年来,围绕着光合机构运转的调节和控制问题,对叶绿体类囊体膜蛋白质的可逆磷酸化进行了广泛研究,发现类囊体膜蛋白质的磷酸化和去磷酸化是调控光合机构运转的步骤之一。现在已知,多种叶绿体类囊体收稿日期：１９９９－０６－２５作者简介：邹永龙（１９７４～）,男,博士生;王国强（１９３９～）,男,研究员。膜蛋白质都能进行可逆的磷酸化,这一反应参与了调节光合电子传递、光状态Ⅰ和状态Ⅱ的转换和编码光合机构的基因表达等。目前,研究人员将研究重点集中在捕光色素复合物Ⅱ（ＬＨ…     

低温胁迫对类囊体膜脂代谢的影响

类囊体膜主要由膜脂、膜蛋白及一些光合色素等成分组成,它是植物进行光合作用的场所.低温能通过影响类囊体膜的结构而影响植物的光合作用.简述了类囊体膜的组成和功能,以及低温胁迫下类囊体膜脂及其脂肪酸组成的变化.简要介绍了膜脂与光抑制的关系,以及利用分子生物学手段研究三烯脂肪酸与植物抗冷性关系的相关进展.     

低温胁迫对类囊体膜脂代谢的影响

类囊体膜主要由膜脂、膜蛋白及一些光合色素等成分组成,它是植物进行光合作用的场所。低温能通过影响类囊体膜的结构而影响植物的光合作用。简述了类囊体膜的组成和功能,以及低温胁迫下类囊体膜脂及其脂肪酸组成的变化。简要介绍了膜脂与光抑制的关系,以及利用分子生物学手段研究三烯脂肪酸与植物抗冷性关系的相关进展。     

Pitt,a Novel Tetratricopeptide Repeat Protein Involved in Light-Dependent Chlorophyll Biosynthesis and Thylakoid Membrane Biogenesis in Synechocystis sp. PCC 6803

Biogenesis of photosynthetic pigment/protein complexes is a highly regulated process that requires various assisting factors. Here, we report on the molecular analysis of the Pitt gene （sir1644） from the cyanobacterium Synechocystis sp. PCC 6803 （Synechocystis 6803） that encodes a membrane-bound tetratricopeptide repeat （TPR） protein of formerly unknown function. Targeted inactivation of Pitt affected photosynthetic performance and light-dependent chlorophyll synthesis. Yeast two-hybrid analyses and native PAGE strongly suggest a complex formation between Pitt and the light-dependent protochlorophyllide oxidoreductase （POR）. Consistently, POR levels are approximately threefold reduced in the pitt insertion mutant. The membrane sublocalization of Pitt was found to be dependent on the presence of the periplasmic photosystem Ⅱ （PSⅡ） biogenesis factor PratA, supporting the idea that Pitt is involved in the early steps of photosynthetic pigment/protein complex formation.     

Carbon Dioxide-Induced Oscillations in Fluorescence and Photosynthesis: Role of Thylakoid Membrane Energization in Regulation of Photosystem II Activity

The response of CO₂ fixation to a sudden increase in ambient CO₂ concentration has been investigated in intact leaf tissue from spinach (Spinacia oleracea) using a dual channel infrared gas analyzer. Simultaneous with these measurements, changes in fluorescence emission associated with a weak, modulated measuring beam were recorded. Application of brief (2-3 seconds) dark intervals enabled estimation of the dark fluorescence level (F_o) under both steady state and transient conditions. The degree of suppression of F_o level fluorescence in the light was strongly correlated with nonphotochemical quenching under all conditions. During CO₂-induced oscillations in photosynthesis under 2% O₂ the changes in nonphotochemical quenching anticipate changes in the rate of uptake of CO₂. At such low levels of O₂ and constant illumination, changes in the relative quantum efficiency of open photosystem II units were estimated as the ratio of the rate of CO₂ uptake and the photochemical quenching coefficient. Under the same conditions the relative quantum efficiency of photosystem II was found to vary inversely with the degree of nonphotochemical quenching. The relationship between changes in the rate of CO₂ uptake: photochemical quenching coefficient and nonphotochemical quenching was altered somewhat when the same experiment was conducted under 20% O₂. The results suggest that electron transport coupled to reduction of O₂ occurs to varying degrees with time during oscillations, especially when ambient O₂ concentrations are high.     

Chlamydia trachomatis Relies on Autonomous Phospholipid Synthesis for Membrane Biogenesis

The obligate intracellular parasite Chlamydia trachomatis has a reduced genome and is thought to rely on its mammalian host cell for nutrients. Although several lines of evidence suggest C. trachomatis utilizes host phospholipids, the bacterium encodes all the genes necessary for fatty acid and phospholipid synthesis found in free living Gram-negative bacteria. Bacterially derived phospholipids significantly increased in infected HeLa cell cultures. These new phospholipids had a distinct molecular species composition consisting of saturated and branched-chain fatty acids. Biochemical analysis established the role of C. trachomatis-encoded acyltransferases in producing the new disaturated molecular species. There was no evidence for the remodeling of host phospholipids and no change in the size or molecular species composition of the phosphatidylcholine pool in infected HeLa cells. Host sphingomyelin was associated with C. trachomatis isolated by detergent extraction, but it may represent contamination with detergent-insoluble host lipids rather than being an integral bacterial membrane component. C. trachomatis assembles its membrane systems from the unique phospholipid molecular species produced by its own fatty acid and phospholipid biosynthetic machinery utilizing glucose, isoleucine, and serine.     

Bacillus subtilis SpoIIIJ and YqjG Function in Membrane Protein Biogenesis

In all domains of life Oxa1p-like proteins are involved in membrane protein biogenesis. Bacillus subtilis, a model organism for gram-positive bacteria, contains two Oxa1p homologs: SpoIIIJ and YqjG. These molecules appear to be mutually exchangeable, although SpoIIIJ is specifically required for spore formation. SpoIIIJ and YqjG have been implicated in a posttranslocational stage of protein secretion. Here we show that the expression of either spoIIIJ or yqjG functionally compensates for the defects in membrane insertion due to YidC depletion in Escherichia coli. Both SpoIIIJ and YqjG complement the function of YidC in SecYEG-dependent and -independent membrane insertion of subunits of the cytochrome o oxidase and F₁F_o ATP synthase complexes. Furthermore, SpoIIIJ and YqjG facilitate membrane insertion of F₁F_o ATP synthase subunit c from both E. coli and B. subtilis into inner membrane vesicles of E. coli. When isolated from B. subtilis cells, SpoIIIJ and YqjG were found to be associated with the entire F₁F_o ATP synthase complex, suggesting that they have a role late in the membrane assembly process. These data demonstrate that the Bacillus Oxa1p homologs have a role in membrane protein biogenesis rather than in protein secretion.The YidC/OxaI/Alb3 protein family plays a crucial role in membrane protein biogenesis by facilitating the insertion of a specific subset of membrane proteins (for reviews, see references 20 and 24). In mitochondria, the OxaI protein is essential for insertion of both nucleus- and mitochondrion-encoded proteins into the inner membrane (39). The OxaI homolog of Escherichia coli, designated YidC, is known to play a role in two different membrane protein insertion pathways. Some proteins, such as subunit c of the rotary domain of the F₁F_o ATP synthase (F_oc) (47), MscL (10), M13 (34), and Pf3 (5), insert via the YidC-only pathway. YidC also functions in concert with the protein-conducting channel SecYEG in membrane insertion of subunit a of cytochrome o oxidase (CyoA) (8, 44) and subunit a of the F₁F_o ATP synthase (23, 53, 54). In addition, YidC has been implicated in the folding of a membrane-inserted lactose permease (30) and the binding protein-dependent maltose ABC transporter (50).Members of the YidC/OxaI/Alb3 protein family are found in all three domains of life, and the number of paralogs per cell or organelle ranges from one (most gram-negative bacteria) to six (Arabidopsis thaliana). The length of Oxa1p-like proteins varies considerably, from just over 200 amino acids (in most gram-positive bacteria) to 795 amino acids (Chlamydophila pneumoniae) (52). However, in all Oxa1p proteins, a conserved region consisting of about 200 amino acids can be recognized, which comprises five putative transmembrane segments, as experimentally demonstrated for E. coli YidC (33). Overall, the amino acid sequence conservation among Oxa1p homologs is low (17). Bacillus subtilis contains two membrane proteins, SpoIIIJ and YqjG, with significant similarity to proteins belonging to the YidC/OxaI/Alb3 family. Previous gene inactivation analysis showed that a single paralog is sufficient for cell viability during vegetative growth of B. subtilis, while a double knockout led to a lethal phenotype (29, 41). SpoIIIJ is essential for activation of a prespore-specific sigma factor (9, 36), and cells with spoIIIJ deleted are incapable of spore formation. Sporulation is blocked at stage III, directly after completion of prespore engulfment (9). YqjG cannot complement SpoIIIJ in this process, but the exact reason for the specific requirement for SpoIIIJ is unknown. Previous studies indicated that the stability of various secretory proteins (e.g., LipA and PhoA) was strongly affected under YqjG- and SpoIIIJ-limiting conditions, while the insertion or stability of a number of membrane proteins tested appeared to be unaffected (41). These data suggested that YqjG and SpoIIIJ, unlike the other Oxa1p-like proteins, play a role in protein secretion. Here we show that both YidC homologs in B. subtilis complement the E. coli growth defect due to a YidC depletion and functionally replace YidC in Sec-dependent and -independent membrane protein insertion. In vitro insertion assays demonstrated that membrane insertion of F_oc of both E. coli and B. subtilis is mediated by SpoIIIJ and YqjG. In addition, the entire F₁F_o ATP synthase of B. subtilis was found to copurify with both SpoIIIJ and YqjG, suggesting that these proteins have a role in a late stage of the assembly of this membrane protein complex.     

Biogenesis and Evolution of Photosynthetic (Thylakoid) Membranes

Work in molecular phylogeny during the past few years has documented that the biogenesis, maintenance, adaptation, and controlled resorption of thylakoid (photosynthetic) membranes are by far more complex than the requirements for maintaining their function, especially in plants (eukaryotic photoautotrophs). Plants, due to their genome compartmentation that originated in a cohabitation of cells (endosymbiotic events), have evolved an exquisite set of regulatory mechanisms for their energy-transducing organelles. These operate in concert with basically ancient regulatory circuits originating in the organelle ancestors. It appears that the biogenesis of thylakoid membranes, as that of chloroplasts in general, cannot be understood without knowledge of the history of the cells.     

Regulation of Protein Synthesis in Inactivated Skeletal Muscle: Signal Inputs,Protein Kinase Cascades,and Ribosome Biogenesis

Disuse atrophy of skeletal muscles is characterized by a significant decrease in the mass and size of muscle fibers. Disuse atrophy develops as a result of prolonged reduction in the muscle functional activity caused by bed rest, limb immobilization, and real or simulated microgravity. Disuse atrophy is associated with the downregulation of protein biosynthesis and simultaneous activation of protein degradation. This review is focused on the key molecular mechanisms regulating the rate of protein synthesis in mammalian skeletal muscles during functional unloading.     

Reciprocal Regulation of AMP-activated Protein Kinase and Phospholipase D

AMP-activated protein kinase (AMPK), a critical sensor of energy sufficiency, acts as central metabolic switch in cell metabolism. Once activated by low energy status, AMPK phosphorylates key regulatory substrates and turns off anabolic biosynthetic pathways. In contrast, the mammalian/mechanistic target of rapamycin (mTOR) is active when there are sufficient nutrients for anabolic reactions. A critical factor regulating mTOR is phosphatidic acid (PA), a central metabolite of membrane lipid biosynthesis and the product of the phospholipase D (PLD)-catalyzed hydrolysis of phosphatidylcholine. PLD is a downstream target of the GTPase Rheb, which is turned off in response to AMPK via the tuberous sclerosis complex. Although many studies have linked AMPK with mTOR, very little is known about the connection between AMPK and PLD. In this report, we provide evidence for reciprocal regulation of PLD by AMPK and regulation of AMPK by PLD and PA. Suppression of AMPK activity led to an increase in PLD activity, and conversely, activation of AMPK suppressed PLD activity. Suppression of PLD activity resulted in elevated AMPK activity. Exogenously supplied PA abolished the inhibitory effects of elevated AMPK activity on mTOR signaling. In contrast, exogenously supplied PA could not overcome the effect AMPK activation if either mTOR or Raptor was suppressed, indicating that the inhibitory effects of PLD and PA on AMPK activity are mediated by mTOR. These data suggest a reciprocal feedback mechanism involving AMPK and the PLD/mTOR signaling node in cancer cells with therapeutic implications.     

天线蛋白和类囊体膜脂对光合系统紫黄质循环的调节作用研究进展

紫黄质循环是紫黄质(V)经过中间物单环氧玉米黄质(A)形成玉米黄质(Z)的可逆转换,是光合系统聚光复合体在低光下的聚光状态与高光下的能量耗散状态之间的转换开关.叶黄素中的玉米黄质可钝化(去激发)激发三线态叶绿素(3Chl*)和激发单线态氧(1O2*),紫黄质循环可直接或间接地通过非光化学淬灭(NPQ)耗散PSⅡ天线蛋白中的过量光能.天线蛋白被认为是依赖玉米黄质(Z)耗散过量光能的部位,天线蛋白通过结合紫黄质循环组分(V,A和Z)来调节紫黄质循环.类囊体膜脂的性质和结构影响紫黄质循环组分(V,A和Z)间的转换,V的脱环氧化速率依赖于V在类囊体膜脂上侧向扩散的速率,紫黄质脱环氧化作用第一步(由V到A的转换)的速度常数是第二步(由A到Z的转换)速度常数的4～6倍.现有的结果表明,天线蛋白和类囊体膜脂是紫黄质循环最基本的调节器.该文对近年来国内外关于紫黄质循环的基本反应及其功能、紫黄质循环酶结构性质和辅因子以及天线蛋白和类囊体膜脂对紫黄质循环的调节作用及其机理等方面的研究进展进行了综述.     

The von Hippel-Lindau Protein pVHL Inhibits Ribosome Biogenesis and Protein Synthesis

pVHL, the product of von Hippel-Lindau (VHL) tumor suppressor gene, functions as the substrate recognition component of an E3-ubiquitin ligase complex that targets hypoxia inducible factor α (HIF-α) for ubiquitination and degradation. Besides HIF-α, pVHL also interacts with other proteins and has multiple functions. Here, we report that pVHL inhibits ribosome biogenesis and protein synthesis. We find that pVHL associates with the 40S ribosomal protein S3 (RPS3) but does not target it for destruction. Rather, the pVHL-RPS3 association interferes with the interaction between RPS3 and RPS2. Expression of pVHL also leads to nuclear retention of pre-40S ribosomal subunits, diminishing polysomes and 18S rRNA levels. We also demonstrate that pVHL suppresses both cap-dependent and cap-independent protein synthesis. Our findings unravel a novel function of pVHL and provide insight into the regulation of ribosome biogenesis by the tumor suppressor pVHL.     

Thylakoid Membrane Protein Kinase Activity as a Signal Transduction Pathway in Chloroplasts

Photosynthetica - In plants external stimuli are perceived through a cascade of signals and signal transduction pathways. Protein phosphorylation and de-phosphorylation is one of the most important...