Arsenic-resistant bacteria isolated from agricultural soils of Bangladesh and characterization of arsenate-reducing strains

Aims:  To analyse the arsenic-resistant bacterial communities of two agricultural soils of Bangladesh, to isolate arsenic-resistant bacteria, to study their potential role in arsenic transformation and to investigate the genetic determinants for arsenic resistance among the isolates.
Methods and Results:  Enrichment cultures were performed in a minimal medium in the presence of As(III) and As(V) to isolate resistant bacteria. Twenty-one arsenic-resistant bacteria belonging to different genera of Gram-positive and Gram-negative bacteria were isolated. The isolates, with the exception of Oceanimonas doudoroffii Dhal Rw, reduced 2 mmol l⁻¹ As(V) completely to As(III) in aerobic conditions. Putative gene fragments for arsenite efflux pumps were amplified in isolates from Dhal soil and a putative arsenate reductase gene fragment was amplified from a Bacillus sp. from Rice soil.
Conclusions:  Phylogenetically diverse arsenic-resistant bacteria present in agricultural soils of Bangladesh are capable of reducing arsenate to arsenite under aerobic conditions apparently for detoxification purpose.
Significance and Impact of the Study:  This study provides results on identification, levels of arsenic resistance and reduction of arsenate by the bacterial isolates which could play an important role in arsenic cycling in the two arsenic-contaminated soils in Bangladesh.     

Cryptic anuran biodiversity in Bangladesh revealed by mitochondrial 16S rRNA gene sequences

To survey the diversity of anuran species in Bangladesh, we compared mitochondrial 16S rRNA gene sequences (approximately 1.4 kbp) from 107 Bangladesh frog specimens. The results of genetic divergence and phylogenetic analyses incorporating data from related species revealed the occurrence of at least eight cryptic species. Hoplobatrachus tigerinus from two districts diverged considerably, indicating the involvement of a cryptic species. Two Fejervarya sp. (large and medium types) and Hylarana cf. taipehensis formed lineages distinct from related species and are probably new species. Microhyla cf. ornata differed from M. ornata with respect to type locality area and involved two distinct species. In addition, we found that Hylarana sp. and Microhyla sp. did not match congeners examined to date in either morphology or 16S rRNA sequence. The occurrence of M. fissipes was tentatively suggested. Consequently, at least, 19 species were found from Bangladesh in this study. These findings revealed a rich anuran biodiversity in Bangladesh, which is unexpected considering the rather simple topographic features of the country.     

A new species of Periploca (Periplocaceae) from Bangladesh

RAHMAN, M. A. & WILCOCK, C. C, 1992. A new species of Periploca (Periplocaceae) from Bangladesh. A new species of Periploca is described from Bangladesh. This is the only representative of the genus occurring in the flora of Bangladesh. It resembles P. graeca but may be distinguished by having shorter peduncles, glabrous calyx lobes, hairy coronal scales, broader and horizontally spreading follicles.     

The volatilisation losses of nitrogen from added urea in some soils of Bangladesh

Summary Considerable volatilisation loss of nitrogen from added urea was recorded in the Coastal saline and Madhupur red soils of Bangladesh under laboratory conditions. The loss was highly magnified by the presence of decomposable organic materials having high C/N ratios.     

The mycoflora and incidence of aflatoxin,zearalenone and sterigmatocystin in dairy feed and forage samples from Eastern India and Bangladesh

The mycoflora of a range of mixed ruminant feed and forage samples collected in Eastern India and Bangladesh were determined. Most fungi isolated from the samples were those associated with low moisture contents. Several potentially mycotoxigenic fungi and thermotolerant species were present particularly in the rice straw. The most frequently isolated fungi were: Aspergillus versicolor (Vuill.) Tiraboschi, Penicillium citrinum Thorn, Eurotium species, Wallemia sebi (Fr.) v. Arx, Aspergillus penicilloides Speg. and yeasts. Fusarium moniliforme Sheldon and Cladosporium species were prevalent in straw but not other feeds. Levels of certain individual fungi, particularly thermotolerant types, were higher in Bangladesh rice straw although overall counts were similar to those of the Indian samples. Mycotoxin analyses for aflatoxins, zearalenone and sterigmatocystin were carried out. Aflatoxins were detected in significant amounts in some feed samples from Eastern India but not in rice straw from India and Bangladesh. Zearalenone occurred in a Paspalum straw sample and three other feed samples from India and sterigmatocystin was detected in three rice straw samples from Bangladesh.     

Habitat Characteristics of the Endangered Hoolock Gibbons of Bangladesh: The Role of Plant Species Richness

Hoolock gibbons ( Hoolock hoolock ) are endangered small apes occurring in Bangladesh, India, Myanmar, and south China. All known populations have undergone declines primarily due to habitat destruction or alteration. We examined the influence of area of natural forests, area of plantations, area of agricultural land and edible plant species richness on the hoolock gibbon numbers from 22 sites in Bangladesh using multiple regression analysis. Area of natural forests and plantations were not linked to hoolock gibbon numbers, whereas area of agricultural land and edible plant species richness were both significantly linked. Higher edible plant species richness was directly related to hoolock gibbon numbers, while the area of agricultural land was inversely related. This is the first quantitative study illustrating the importance of these two variables with hoolock gibbon numbers. We also analyzed the existing habitat characteristics in two of the largest hoolock gibbon populations in Bangladesh: Lawachara (42 individuals) and Kaptai (84 individuals). Trees in Lawachara were generally smaller compared to those in Kaptai. Artocarpus , Tectona , and Dipterocarpus were the three most important genera in both sites, although Artocarpus was more important in Lawachara. Each site also had an abundant variety of tree species utilized by hoolock gibbons for food. We discuss the current context of primate conservation in Bangladesh and suggest that the current conservation priority for gibbons in the country should be protection and improvement of habitat.     

Molecular characterization of marine and coastal fishes of Bangladesh through DNA barcodes

This study describes the molecular characterization of marine and coastal fishes of Bangladesh based on the mitochondrial cytochrome c oxidase subunit I (COI) gene as a marker. A total of 376 mitochondrial COI barcode sequences were obtained from 185 species belonging to 146 genera, 74 families, 21 orders, and two classes of fishes. The mean length of the sequences was 652 base pairs. In Elasmobranchii (Sharks and rays), the average Kimura two parameter (K2P) distances within species, genera, families, and orders were 1.20%, 6.07%, 11.08%, and 14.68%, respectively, and for Actinopterygii, the average K2P distances within species, genera, families, and orders were 0.40%, 6.36%, 14.10%, and 24.07%, respectively. The mean interspecies distance was 16‐fold higher than the mean intraspecies distance. The K2P neighbor‐joining (NJ) trees based on the sequences generally clustered species in accordance with their taxonomic position. A total of 21 species were newly recorded in Bangladesh. High efficiency and fidelity in species identification and discrimination were demonstrated in the present study by DNA barcoding, and we conclude that COI sequencing can be used as an authentic identification marker for Bangladesh marine fish species.     

Can Homegardens Conserve Biodiversity in Bangladesh?

In managed landscapes, tree-dominated habitats often show promise for biodiversity conservation. In Bangladesh where natural forest cover is less than 10 percent, homegardens, which are maintained by at least 20 millions households, represent one possible strategy for biodiversity conservation. This study investigated the floristic and structural diversity of 402 homegardens from six regions across southwestern Bangladesh. All plants were censused, totaling 419 species (59% native), including six IUCN Red Listed. The median homegarden (800 m²) contained a mean of 34 species. Each region contained a mean of 293 species in a mean of 67 homegardens. A total of 49,478 individuals (107 per homegarden and 1003 per hectare) of trees and shrubs were counted from 45.2 ha total sampled area. Thus, significant botanical richness was exhibited in the homegardens across southwestern Bangladesh. However, most species were rare: 82 percent of all species including 189 native were found in 50 or fewer homegardens, and 63 species (36 native) were found in only one or two homegardens. Sixty percent of all tree and shrub species had 50 or fewer individuals each. Thus, whereas richness across the landscape was high, serious effort must be made to increase the populations of most species. We propose three main conservation activities: (1) awareness building; (2) protection of existing individuals of rare species; and (3) propagation. Overlaying all of these activities is the inclusion of local communities in the process, who were the ones to retain these species in homegardens in the first place, and the stakeholders who will determine whether homegardens indeed act as long-term repositories to biodiversity conservation.     

Goezia bangladeshi n. sp. (Nematoda: Anisakidae) from an anadromous fish Tenualosa ilisha (Clupeidae)

A total of 1432 hilsa shad, Tenualosa ilisha (=Hilsa ilisha) from 11 fresh water, brackish water and marine localities in Bangladesh yielded 13 adult Goezia bangladeshi n. sp., all specimens being found in the intestine of a single fish host caught in the lower Ganges. A total of 2372 Goezia juveniles were recovered from 490 infected fish (prevalence 34.2%). This is the first Goezia species recorded from Bangladesh, and it differs from other valid species by the number of caudal papillae (pre 7-9, para 3, post 6); encircled by tiny spines, the position of double papillae, the arrangement of body spines, and the length ratio of the intestinal caecum and the ventricular appendix (1: 3.33-4.72). Juveniles were free in the gut, embedded in the gut wall and encapsulated in mesenteries. Tenualosa ilisha serves as the definitive host, but the predominance of juveniles may indicate that piscivorous hosts may also serve as such. A list of the nominal Goezia species with important characters is provided.     

Examination of gastrointestinal helminth in livestock grazing in grassland of Bangladesh

To determine association of grassland with parasitic diseases of livestock in Bangladesh, the 'Tracer' animals (two cow calves and two goats) were released for a month in a grassland used for communal grazing of livestock near school premise in Kanthal, Trishal, Mymensingh, Bangladesh. After slaughtering of the tracer animals, their gastrointestinal tract examination revealed six species of nematode and one cestode. The nematode species were Haemonchus contortus, Trichostrongylus axei, Mecistocirrus digitatus, Oesophagostomum spp., Trichuris spp. and Bunostomum sp. The cestode was one of the genus Moniezia. With this preliminary study, grasslands are thought to be one of the main sources of gastrointestinal parasitic diseases of livestock in Bangladesh.     

Cyanobacteria in rice soils

Cyanobacteria were recovered from each of 38 soil samples collected from local rice fields. Of the 84 species belonging to 31 genera that were isolated, 42 were heterocystous diazotrophic species belonging to 14 genera and the remaining were non-heterocystous. Fischerella, Nostoc and Calothrix were widespread.Z.U.M. Khan is with the Department of Botany, Jahangirnagar University, Savar, Dhaka, Bangladesh. Z.N. Tahmida Begum and M.Z. Hossain are with the Department of Botany and R. Mandal is with the Department of Soil Science, bot at the University of Dhaka, Dhaka-1000, Bangladesh;     

Fusarium Species From Plant Debris Associated With Soils From Maize Production Areas in the Transkei Region of South Africa

Fusarium species were isolated from plant debris in soil samples collected from cultivated maize fields and from undisturbed grasslands in two areas of the Transkei region. A total of 1205 Fusarium isolates were recovered from 27 soil samples. Fifteen Fusarium species were recovered from plant debris from Bizana soils and 13 Fusarium species from plant debris from Centane soils. The two dominant Fusarium species in both areas were F. oxysporum and F. equiseti. Very few isolates of F. moniliforme and F. subglutinans were recovered, but both of these species had significantly higher relative densities in cultivated soils than in undisturbed soils. This revised version was published online in June 2006 with corrections to the Cover Date.     

Comparison of ectomycorrhizas of Quercus garryana (Fagaceae) on serpentine and non-serpentine soils in southwestern Oregon

The diversity of ectomycorrhizal communities associated with Quercus garryana on and off serpentine soils was compared and related to landscape-level diversity. Serpentine soils are high in magnesium, iron, and heavy metals and low in fertility. In plant communities on serpentine soils, a high proportion of flowering plant species are endemic. At three sites with paired serpentine and nonserpentine soils in southwestern Oregon, we sampled Q. garryana roots and categorized ectomycorrhizas by morphotyping and by restriction fragment length patterns. Ectomycorrhizas were abundant at all sites; no single fungal species dominated in the ectomycorrhizas. Of 74 fungal species characterized by morphotype and pattern of restriction fragment length polymorphisms, 46 occurred on serpentine soils, and 32 were unique to serpentine soil. These species are potentially endemic to serpentine soil. Similarities in species composition between paired serpentine and nonserpentine soils were not significantly lower than among three serpentine sites or among three nonserpentine sites. We conclude that mycorrhizal communities associated with oaks on serpentine soil do not differ in species richness or species evenness from those on neighboring nonserpentine soil.     

Soil mycoflora from trufflè native areas of Saudi Arabia

Soil fungi of areas in the North-Eastern region of Saudi Arabia where truffles are native were surveyed. Forty-three species of fungi belonging to twenty genera were isolated. Most were recovered from soils underneath or around truffle ascocarps: thirty species from soil under the surface of Tirmania nivea ascocarps, twenty-four from Terfezia boudieri soil and twenty species each from Tirmania pinoyi and Terfezia claveryi soils. Rhizosphere soil of Helianthemum lippi, on the other hand, yielded twenty-four fungal species while only fourteen fungal species were found in soil without vegetation. The total counts of fungi/g soil were highest in soils from the under surface of truffles, followed by rhizosphere soil, with the lowest in soils without vegetation.     

Genetic differentiation of the Fejervarya limnocharis complex from Bangladesh and other Asian countries elucidated by allozyme analyses

The present study was conducted to elucidate the genetic divergence and the phylogenetic relationships in the F. limnocharis complex from Bangladesh and other Asian countries such as Sri Lanka, Thailand, Malaysia, Taiwan and Japan by allozyme analyses. We used a total of 95 frogs of the F. limnocharis complex from these countries and F. cancrivora from the Philippines as an outgroup. Based on body size, the F. limnocharis complex from Bangladesh was divided into three distinct groups: large, medium and small types. Allozyme analyses were carried out with 28 loci encoding 20 enzymes and two blood proteins by horizontal starch-gel electrophoresis. When genetic distance was calculated, distinct divergence was found among the three types: mean genetic distance was 0.782 between the small and medium types, 1.458 between the large and medium types, and 1.520 between the large and small types. Phylogenetic trees based on genetic distance showed that all populations of Bangladesh small type strongly formed a cluster and were found to be most closely related to the Sri Lanka population; that all populations of Bangladesh large type formed a very strong cluster and were grouped with several populations from Thailand, Malaysia, Japan, and Taiwan; and that the medium type was segregated from all other groups. This may imply that each of the three types is a different species, and that the medium type is possibly an undescribed taxon.     

Structure of the ground beetle (Coleoptera, Carabidae) complexes in potato field agrocenoses on different soils in Northwestern Russia

A 4-year study of Carabidae inhabiting potato fields in Northwestern Russia (Leningrad Province) revealed 58 species. Of these, 42 species were found in the areas with sandy soils, and 41 species, on loamy soils. The Jaccard’s faunistic similarity coefficient between the carabid complexes of fields with different types of soil was 43.1%. The ground-beetle complexes from fields on different soils differed in the species composition and the dominance structure. The number of individuals collected on sandy soils was almost 1.5 times as great as that collected on loamy soils; the latter biotopes were also characterized by a lower value of the Shannon species diversity index.     

Microsatellite markers from the Indian major carp species,Catla catla

The Indian major carp Catla catla is indigenous to the major river systems of Northern India, Pakistan and Bangladesh, and is an important contributor to aquaculture production in India and Bangladesh. Five polymorphic microsatellite loci, developed from Catla catla are described and their utility in other major carp and cyprinid species is tested.     

Length–weight and length–length relationships of 10 small fish species from the Ganges, Bangladesh

This study describes the length–weight (LWR) and length–length (LLR) relationships for ten small indigenous fish species from the lower part of the Ganges, Bangladesh, namely Ailia coila , Amblypharyngodon mola , Aspidoparia morar , Clupisoma atherinoides , Eutropiichthyes vacha , Glossogobius giuris , Gudusia chapra , Lepidocephalus guntea , Mystus vittatus , and Puntius ticto . A total of 2142 specimens, representing 10 species of 5 families used for this study were caught by traditional fishing gear from March 2006 to February 2007. Standard length (SL), total length (TL) and fork length (FL) for each specimen were measured by digital slide calipers and each body weight (BW) was taken by a digital balance. The allometric coefficient b of the LWR was close to the isometric value ( b  =   3.001) in G. giuris , although it suggested negative allometric growth in A. coila, A. morar, C. atherinoides, E. vacha, and P. ticto, whilst positive allometric growth in rest of the species. The results further indicated that the LLRs were highly correlated ( r ²  >   0.890; P < 0.01). To the best our knowledge, this study presented the first reference on LWR and LLR for most of the species in Bangladesh.     

Genetic relationships and reproductive-isolation mechanisms among the Fejervarya limnocharis complex from Indonesia (Java) and other Asian countries

In order to elucidate the genetic relationships and reproductive-isolation mechanisms among the Fejervarya limnocharis complex from Indonesia and other Asian countries, allozyme analyses and crossing experiments were carried out using 208 individuals from 21 localities in eight Asian countries. The allozyme analyses revealed that 17 enzymes examined were controlled by genes at 27 loci, and that 7.9 phenotypes were produced by 5.2 alleles on average. The two species recognized in F. limnocharis sensu lato from Southeast Asia (i.e., F. limnocharis sensu stricto and F. iskandari) were found to occur sympatrically at three localities (Bogor, Cianjur and Malingping), all on Java, Indonesia. Fejervaya iskandari was dominant at each of these localities and showed substantial geographic genetic variation. Laboratory-produced hybrids between F. limnocharis and F. iskandari from Java became underdeveloped and died at the tadpole stage, suggesting that these species are completely isolated by hybrid inviability. Hybrids between topotypic F. limnocharis and the Malaysian and Japanese conspecific populations developed normally to metamorphosis. Likewise, hybrids between topotypic F. iskandari and the Thailand and Bangladesh conspecific populations also showed normal viability throughout larval development. The present allozyme analyses and crossing experiments strongly suggested the presence of two distinct forms, the large type and the small type, in the F. limnocharis complex from Asia, and further subdivision of the large type into the F. limnocharis assemblage and the F. iskandari assemblage. The small type was found in samples from India, Thailand, Bangladesh and Sri Lanka, and included at least three different species. The sample from Pilok, Thailand, was considered to represent an undescribed species.