The effect of biodegradation on gammacerane in crude oils

Gammacerane is one of the major biomarkers widely used in depositional environment diagnosis, oil family classification, and oil-source correlation. It is generally accepted that gammacerane is more resistant to biodegradation than regular hopanes. However, whether it is biodegradable as well has not been reported in literatures. In order to investigate the effect of biodegradation on gammacerane in crude oils, 69 core samples from two biodegraded petroleum accumulations were geochemically characterized by quantitative GC–MS analysis. All samples are originated from lacustrine source rocks in China and have experienced at least level 8 degree of biodegradation on the scale of Peters and Moldowan (The biomarker guide: interpreting molecular fossils in petroleum and ancient sediments, Prentice Hall, Englewood Cliffs, 1993). Both case histories showed the concentration of gammacerane decrease with increasing severity of biodegradation, indicating the destruction of gammacerane by biodegradation. A whole series of 25-norhopanes paralleling the 17α,21β-hopanes (up to C₃₄), together with C₂₈ 18-α-25,30-bisnorneohopane, C₂₉ 25-nordiahopane and C₂₉ 25-norgammacerane, is found in the Liaohe sample suite but C₃₃, C₃₄ 25-norhopane and 25-norgammacerane are almost undetectable in the Junggar case. The gammacerane in the Liaohe case study appear to be altered simultaneously with hopanes, although the rate of gammacerane alteration is slower. Its susceptibility to biodegradation is similar to 18α(H)-22,29,30-trisnorneohopane (Ts) and 17α(H)-22,29,30-trisnorhopane (Tm) but more vulnerable than 18α-30-norneohopane (C₂₉ Ts), 15α-methyl-17α(H)-27-norhopane (C₃₀ diahopane) and pregnanes. The gammacerane in the Junggar oils appear to be less biodegradable than the Liaohe case history. It was altered simultaneously with pregnanes and C₂₉ Ts but faster than C₃₀ diahopane. The present data suggest that biodegradation sequence is not universal since the relative rates of biodegradation of different compound classes depend upon specific environmental conditions. Like the case of hopane demethylation, the mechanism of gammacerane biodegradation is not straightforward. While the conversion of gammacerane to 25-norgammacerane is not quantitatively balanced in the Liaohe case history, no 25-norgammacerane has been formed from the degradation of gammacerane in the Junggar case history. The ratio of gammacerane to regular hopanes increases with biodegradation degree especially at extreme levels of degradation, gammacerane index is no longer valid for depositional environment assessment or oil-source correlation.     

Effects of nitrogen source on crude oil biodegradation

Summary The effects of NH₄Cl and KNO₃ on biodegradation of light Arabian crude oil by an oil-degrading enrichment culture were studied in respirometers. In poorly buffered sea salts medium, the pH decreased dramatically in cultures that contained NH₄Cl, but not in those supplied with KNO₃. The ammonia-associated pH decline was severe enough to completely stop oil biodegradation as measured by oxygen uptake. Regular adjustment of the culture pH allowed oil biodegradation to proceed normally. A small amount of nitrate accumulated in all cultures that contained ammonia, but nitrification accounted for less than 5% of the acid that was observed. The nitrification inhibitor, nitrapyrin, had no effect on the production of nitrate or acid in ammonia-containing cultures. When the culture pH was controlled, either by regular adjustment of the culture pH or by supplying adequate buffering capacity in the growth medium, the rate and extent of oil biodegradation were similar in NH₄Cl- and KNO₃-containing cultures. the lag time was shorter in pH-controlled cultures supplied with ammonia than in nitrate-containing cultures.     

Modeling of crude oil biodegradation using two phase partitioning bioreactor

In this work, crude oil biodegradation has been optimized in a solid‐liquid two phase partitioning bioreactor (TPPB) by applying a response surface methodology based d ‐optimal design. Three key factors including phase ratio, substrate concentration in solid organic phase, and sodium chloride concentration in aqueous phase were taken as independent variables, while the efficiency of the biodegradation of absorbed crude oil on polymer beads was considered to be the dependent variable. Commercial thermoplastic polyurethane (Desmopan®) was used as the solid phase in the TPPB. The designed experiments were carried out batch wise using a mixed acclimatized bacterial consortium. Optimum combinations of key factors with a statistically significant cubic model were used to maximize biodegradation in the TPPB. The validity of the model was successfully verified by the good agreement between the model‐predicted and experimental results. When applying the optimum parameters, gas chromatography‐mass spectrometry showed a significant reduction in n‐alkanes and low molecular weight polycyclic aromatic hydrocarbons. This consequently highlights the practical applicability of TPPB in crude oil biodegradation. © 2014 American Institute of Chemical Engineers Biotechnol. Prog., 30:797–805, 2014     

Modification of foliar solute concentrations by calcium in two species of wheat stressed with sodium chloride and/or potassium chloride

The effects of saline-stresses due to different salts on growth and on foliar solute concentrations in seedlings of two species of wheat that differed in salt tolerance. Triticum aestivum L. cv. Probred and Triticum turgidum L. (Durum group) cv. Aldura, were studied. Triticum aestivum is the more salt tolerant species. The salts used were NaCl, KCI, a 1:1 mixture of NaCI and KCI, and these same monovalent cation salts but mixed with CaCI₂ at a ratio of 2:1 on a molar basis of monovalent to divalent cation salts. Growth inhibition of both species was a function of media osmotic potentials. There was a small additional inhibition of growth if KCI replaced NaCI as the salinizing salt. CaCI₂ had little or no effect on growth inhibition beyond an osmotic effect except at the most severe stress level, i.e. when Ca²⁺ concentrations may be excessive. The amounts of water-soluble Ca²⁺ were about 10 times higher in leaves of plants grown in the presence of CaCI₂ than in its absence, but its concentrations even then were approximately 10% or less of those of the monovalent cations. Including CaCI₂ in growth media resulted in a reduction in the amount of Na⁺ in leaves compared to the amounts in plants grown at the same osmotic potential but in the absence of CaCI₂. Triticum aestivum was a better Na⁺-excluder than T. turgidum. With CaCI₂ in media, (Na⁺+ K⁺) remained relatively constant or increased by small amounts as media osmotic potentials décreased. In the absence of CaCI₂₊ (Na⁺+ K⁺) increased by large amounts when media osmotic potentials were at ?0.6 and ?0.8 MPa. It is concluded that the accumulation system in leaves for monovalent cations was under feed-back control, and that this control mechanism was inhibited by high media concentrations of Na⁺ and/or K⁺. Sucrose was present at a constant amount under all growth conditions. Proline started accumulating when (Na⁺+ K⁺) exceeded a threshold value of 200 μmol (g fresh weight)^?1. Its concentration was 5 to 13% of that portion of (Na⁺+ K⁺) that exceeded the threshold value.     

Effects of amendments on biodegradation of crude petroleum by sediment bacteria from Bonny River Estuary

The biodegradation of Bonny light crude petroleum by bacteria in batch culture was enhanced by the addition to culture media, of 0.2 mg of urea and soya bean lecithin per 100 ml of crude oil, sediment and water mixture. Biodegradation was found to be purely an aerobic process. There was a direct relationship between hydrocarbon content and proportion (%) of total heterotrophic count that was capable of growing on crude petroleum as sole carbon and energy source.     

Effects of sodium chloride on tobacco plants

Abstract The effect of salinity on the growth and ion concentrations in a number of tobacco cultivars is described. Sodium chloride, at a concentration of 200 mol m^?3, hardly affected the fresh weight, but significantly reduced the dry weight. The difference in the response of fresh and dry weights to salt was due to a change in succulence (water per unit leaf area); the latter increased with increasing leaf Na⁺ and Cl^? concentration. Under saline conditions, increasing the external Na⁺: Ca^? ratio by decreasing the Ca²⁺ concentration increased the accumulation of Na⁺ and Cl^? into the leaf tissue.     

Growth of Aeromonas species on increasing concentrations of sodium chloride

The growth of 16 strains of Aeromonas, representing 12 species of the genera, were examined at different salt levels (0-1.71 M NaCl). All the strains grew on media with 0.34 M NaCl, and nine on media with 0.68 M. Two strains, Aer. enteropelogenes and Aer. trota, were able to grow on media with 0.85 M and 1.02 M NaCl, respectively. Comparison of the growth curves of Aer. hydrophila ATCC7966 and Aer. trota ATCC 49657 on four concentrations of NaCl (0.08, 0.34, 0.68 and 1.02 M) confirm the high tolerance of Aer. trota, and indicate that high concentrations of salt increase the lag time and decrease the maximum growth rate. However, both strains were able to grow, slowly, in at least 0.68 M NaCl, a sodium chloride concentration currently used as food preservative.     

Volatile hydrocarbon biodegradation by a mixed-bacterial culture during growth on crude oil

Volatile hydrocarbon biodegradation by a mixed-bacterial culture during growth on Bow River crude oil was investigated using solid phase microextraction (SPME). Inoculum treatments were examined in relation to C₅–C₁₁ hydrocarbon degradation. Up to 1600 mg/l biomass (dry weight) was tested without achieving significant volatile hydrocarbon partitioning and affecting analysis. Inoculum age rather than concentration had the most profound impact on biodegradation. When late log phase crude oil-grown inocula were used, C₅–C₁₁ biodegradation reached 55–60%; methylcyclohexane and other branched compounds eluting before n-C₈ were recalcitrant. Increasing the late log inoculum concentration from 0.63 to 63 mg/l resulted in a twofold increase in degradation rate without improving the substrate range. Methylcyclohexane recalcitrance was correlated with reduced levels of hydrocarbon-degrading bacteria and volatile hydrocarbon evaporation from the inoculum flasks. A decreased lag phase prior to degradation was observed when using early stationary phase cultures as inocula and most compounds up to C₁₁, including methylcyclohexane, were biodegraded. Journal of Industrial Microbiology & Biotechnology (2001) 26, 356–362. Received 16 November 2000/ Accepted in revised form 17 March 2001     

Effects of altered tonicity by sodium chloride on L-tryptophan binding to hepatic nuclei

This study was concerned with theeffects of NaCl administered in vivo or added in vitro to isolatednuclei on [³H]tryptophan binding to rat hepaticnuclei assayed in vitro. Hypertonic (10.7%) NaCl administered in vivoto rats caused at 10 min a marked decrease in in vitro binding (totaland specific) of [³H]tryptophan to hepaticnuclei. In vitro incubation of isolated hepatic nuclei, but not ofisolated nuclear envelopes, with added NaCl (particularly at 0.125 × 10⁴ M and 0.25 × 10⁴ M) revealed significant inhibition of[³H]tryptophan binding. However, isolatedhepatic nuclear envelopes prepared after in vitro incubation ofisolated nuclei with added NaCl did show inhibition of[³H]tryptophan binding (total and specific)compared with controls. Other salts (KCl, MgCl₂,NaHCO₃, NaC₂H₃O₂, NaF,or Na₂SO₄), at similar concentrations to thatof NaCl except for MgCl₂, when added to isolated nuclei didnot appreciably inhibit nuclear tryptophan binding. Kinetic studies ofin vitro nuclear [³H]tryptophan binding in thepresence of 0.125 × 10⁴ M NaCl revealed thatbinding decreased at 0.5 h and continued to 2 h compared with nuclear[³H]tryptophan binding with controls (withoutNaCl addition). The results obtained in vivo in rats and those obtainedin vitro with isolated hepatic nuclei revealed NaCl-induced inhibitoryeffects on [³H]tryptophan binding to hepaticnuclei. Although the inhibitory effects were similar under the twodifferent experimental conditions, the mechanism for each may bedifferent in that the NaCl concentration in hepatic cells afteradministration of NaCl in vivo was appreciably higher than the lowlevels added in vitro to the isolated hepatic nuclei.

     

Production of chitinolytic enzymes from a novel species ofAeromonas

A bacterial strain secreting potent chitinolytic activity was isolated from shrimp-pond water by enrichment culture using colloidal crab-shell chitin as the major carbon source. The isolated bacterium, designated asAeromonas sp No. 16 exhibited a rod-like morphology with a polar flagellum. Under optimal culture conditions in 500-ml shaker flasks, it produced a chitinolytic activity of 1.4 U ml^–1. A slightly higher enzymatic activity of 1.5 U ml^–1 was obtained when cultivation was carried out in a 5-liter jar fermentor using a medium containing crystalline chitin as the carbon source. The secretion of the enzyme(s) was stimulated by several organic nitrogenous supplements. Most carbon sources tested (glucose, maltose, N-acetylglucosamine, etc) enhanced cell growth, but they slightly inhibited enzyme secretion. Glucosamine (0.5% w/v) severely inhibited cell growth (16% of the control), but it did not significantly affect enzyme secretion. The production of chitinolytic enzymes was pH sensitive and was enhanced by increasing the concentration of colloidal chitin to 1.5%. The observed chitinolytic activity could be attributed to the presence of -N-acetylglucosaminidase and chitinase. Chitinase was purified by ammonium sulfate fractionation and preparative gel electrophoresis to three major bands on SDS-PAGE. An in-gel enzymatic activity assay indicated that all three bands possessed chitinase activity. Analysis of the enzymatic products indicated that the purified enzyme(s) hydrolyzed colloidal chitin predominantly to N,N-diacetyl-chitobiose and, to a much lesser extent, the mono-, tri, and tetramer of N-acetylglucosamine, suggesting that they are mainly endochitinases.     

Effects of sodium acetate and sodium chloride on EMS-induced chlorophyll mutations in barley

Sodium acetate solutions to which sodium chloride was added, and acetate or chloride alone have been used as pre-, simultaneous, and post-treatment of dry and pre-soaked seeds of barley to study their effect on the types and frequencies of ethyl methanesulphonate (EMS)-induced chlorophyll mutations in spring barley, variety Elsa, and winter barley, varieties $\text{436}\text{35}$ and Ager. Application of acetate/chloride on dry seeds before or simultaneously with EMS both resulted in the frequency of chimeral plants with chlorophyll-deficient sectors in M₁ and chlorophyll mutants in M₂ approximately being halved as compared with the controls (EMS treatment alone).An opposite effect was observed after simultaneous treatment with acetate/ chloride and EMS (pH 4.5 and pH 7.0) and application of acetate/chloride after EMS treatment of pre-soaked seeds. In this case the mutagen sensitivity, i.e. the frequency of chimeral plants with induced chlorophyll-deficient sectors in M₁ and of chlorophyll mutants in M₂, was approximately doubled as compared with the control.Separate application of both acetate or chloride as a simultaneous treatment with EMS resulted also in an increase in the chlorophyll mutation frequency as compared with EMS treatment alone.Based on these results some aspects of the acetate/chloride effect are briefly discussed.     

Responses of four Brassica species to sodium chloride

Responses in sand culture of four Brassica species, B. campestris, B. carinata, B. juncea and B. napus to NaCl were assessed for growth and yield. B. napus produced significantly greater fresh and dry biomass than the other three species in NaCl treatments and also a higher seed yield in both absolute and relative terms when grown at 125 mol/m³ NaCl. In contrast, B. campestris had the lowest biomass production, seed yield and oil content. B. campestris did not differ significantly from B. juncea and B. carinata in biomass production for growth, but B. carinata had a significantly higher seed yield (1.60 g/plant) than that of B. juncea and B. campestris (0.69 and 0.61 g/plant, respectively). The higher seed yielding species, B. napus (1.74 g/plant) and B. carinata (1.60 g/plant) accumulated lower amounts of Na⁺ and Cl⁻ in their tissues and had significantly higher K selectivity (S_K,Na) in their shoots than did those of B. campestris and B. juncea, B. napus and B. carinata also had higher leaf succulence than that of B. campestris. In view of the results presented here it can be concluded that B. napus and B. carinata are relatively tolerant to NaCl whereas B. campestris and B. juncea are relatively sensitive to NaCl.     

Essential oils from two endemic species of Apiaceae from Iran

The composition of essential oils of Leutea glaucopruinosa (Rech.f.) Akhani & Salimian comb. nov., and Zeravschania (Boiss. & Hausskn.) Salimian & Akhani comb. nov. were analysed by GC-MS. 49 compounds are identified in the former and 33 compounds in the latter, comprising a total of 76 compounds in both species. Both species were originally described under Peucedanum, which are transferred in this paper into Leutea and Zeravschania, respectively. The chemical compounds of the essential oils show that there are only seven common compounds between two species. The major compounds of L. glaucopruinosa are mostly monoterpene hydrocarbons and oxygenated monoterpenes, in which alpha-pinene (31.5%), sabinene (9.7%), beta-pinene (9.2%), exo-fenchyl acetate (4.5%) are dominant. In Z. pastinacifolia sesquiterpene hydrocarbons and phenylpropanoids dominate with beta-bisabolene (37.3%), 3,1-butyl-1,2-dimethoxy benzene (14.9%), 10,11-dimethylbicyclo[6.3.0]undec-(8)-en-9-one (12.9%), 4-t-butyl-1,2-dimethoxy benzene (6.8%), (E)-asarone (5.1%) and elemicine (4.1%) as major compounds.     

Porous biocarrier-enhanced biodegradation of crude oil contaminated soil

Soil contamination with crude oil from petrochemicals and oil exploitation is an important worldwide issue. Comparing available remediation techniques, bioremediation is widely considered to be a cost-effective choice; however, slow degradation of crude oil is a common problem due to the low numbers of bacteria capable of degrading petroleum hydrocarbons and the low bioavailability of contaminants in soil. To promote crude oil removal, biocarrier for immobilization of indigenous hydrocarbon-degrading bacteria was developed using porous materials such as activated carbon and zeolite. Microbial biomass reached 10¹⁰ cells g^?1 on activated carbon and 10⁶ cells g^?1 on zeolite. Total microbial and dehydrogenase activities were approximately 12 times and 3 times higher, respectively, in activated carbon than in zeolite. High microbial colonization by spherical and rod shapes were observed for the 5–20 μm thick biofilm on the outer surface of both biocarriers using electronic microscopy. Based on batch-scale experiments containing free-living bacterial cultures and activated carbon biocarrier into crude oil contaminated soil, biocarrier enhanced the biodegradation of crude oil, with 48.89% removal, compared to natural attenuation with 13.0% removal, biostimulation (nutrient supplement only) with 26.3% removal, and bioaugmentation (free-living bacteria) with 37.4% removal. In addition, the biocarrier increased the bacterial population to 10⁸ cells g^?1 dry soil and total microbial activity to 3.5 A₄₉₀. A hypothesis model was proposed to explain the mechanism: the biocarrier improved the oxygen, nutrient mass transfer and water holding capacity of the soil, which were the limiting factors for biodegradation of non-aqueous phase liquid (NAPL) contaminants such as crude oil in soil.Scientific relevanceThis study explored the role of biocarrier in enhancing biodegradation of hydrophobic contaminants such as crude oil, and discussed the function of biocarrier in improving oxygen mass transfer and soil water holding capacity, etc.     

Effects of sodium chloride and sodium bicarbonate in the diet on the performance of calves

Sixty male Friesian calves were weaned from milk at 5 weeks of age. From 3 to 11 weeks of age, the calves were offered a diet of barley, meat meal, urea and 15% oat straw, supplemented with sodium chloride (NaCl) or sodium bicarbonate (NaHCO₃). The sodium (Na) contents of the diets supplemented with NaCl were 0.3, 1.1, 1.9 and 2.8%. The sodium contents of the diets supplemented with NaHCO₃ were 1.1 and 1.9%.The performance of the calves fed on the diets containing 0.3, 1.1 and 1.9% Na from NaCl was similar, but the organic matter intake and weight gains of the calves fed on the diet containing 2.8% Na were significantly lower between 5 and 11 weeks of age. The feed intake of the calves fed on the diets containing 1.1 and 1.9% Na from NaHCO₃ was 8 and 15% greater than the feed intake of the calves fed on the diet containing 0.3% Na. However, there was no significant difference in the intake of organic matter, the efficiency of feed conversion ratios or the weight gains of the calves.The sodium treatments resulted in no significant differences in the concentration of volatile fatty acids in the rumen. The addition of NaHCO₃ to the diets altered in acid—base balance in jugular blood.     

Accumulation of selenium by different plant species grown under increasing sodium and calcium chloride salinity

High levels of naturally occurring selenium (Se) are often found in conjunction with different forms of salinity in central California. Plants considered for use in phytoremediation of high Se levels must therefore be salt tolerant. Selenium accumulation was evaluated for the following species under increasing salt (NaCl and CaCl) conditions:Brassica napus L. (canola),Hibiscus cannibinus L. (kenaf),Festuca arundinacea L. (tall fescue), andLotus tenuis L. (birdsfoot trefoil). The experimental design was a complete randomized block with four salt treatments of <1, 5, 10, and 20 dS m^-1, four plant species, three blocks, and six replicates per treatment. Ninety days after growing in the respective salt treated soil with a Se concentration of 2 mg Se kg^-1 soil, added as Na₂SeO₄, all plant species were completely harvested. Among the species tested, shoot and root dry matter yield of kenaf was most significantly (p<0.001) affected by the highest salt treatment and tall fescue and canola were the least affected species. Generally there was a decrease in tissue accumulation of Se with increasing salt levels, except that low levels of salinity stimulated Se accumulation in canola. Canola leaf and root tissue accumulated the highest concentrations of Se (315 and 80 mg Se kg^-1 DM) and tall fescue the least (35 and 7 mg Se kg^-1 DM). Total soil Se concentrations all harvest were significantly (p<0.05) lower for all species at all salt treatments. Removal of Se from soil was greatest by canola followed by birdsfoot trefoil, kenaf and tall fescue. Among the four species, canola was the best candidate for removing Se under the tested salinity conditions. Kenaf may be effective because of its large biomass production, while tall fescue and birdsfoot trefoil may be effective because they can be repeatedly clipped as perennial crops.     

Thermophilic biodegradation of BTEX by two Thermus Species

Two thermophilic bacteria, Thermus aquaticus ATCC 25104 and Thermus species ATCC 27978, were investigated for their abilities to degrade BTEX (benzene, toluene, ethylbenzene, and xylenes). Thermus aquaticus and the Thermus sp. were grown in a nominal medium at 70 degrees C and 60 degrees C, respectively, and resting cell suspensions were used to study BTEX biodegradation at the same corresponding temperatures. The degradation of BTEX by these cell suspensions was measured in sealed serum bottles against controls that also displayed significant abiotic removals of BTEX under such high-temperature conditions. For T. aquaticus at a suspension density of only 1.3 x 10(7) cells/mL and an aqueous total BTEX concentration of 2.04 mg/L (0.022 mM), benzene, toluene, ethylbenzene, m-xylene, and an unresolved mixture of o-and p-xylenes were biodegraded by 10, 12, 18, 20, and 20%, respectively, after 45 days of incubation at 70 degrees C. For the Thermus sp. at a suspension density of 1.1 x 10(7) cells/mL and an aqueous total BTEX concentration of 6.98 mg/L (0.079 mM), benzene, toluene, ethylbenzene, m-xylene, and the unresolved mixture of o-and p-xylenes were biodegraded by 40, 35, 32, 33, and 33%, respectively, after 45 days of incubation at 60 degrees C. Raising the BTEX concentrations lowered the extents of biodegradation. The biodegradations of both benzene and toluene were enhanced when T. aquaticus and the Thermus sp. were pregrown on catechol and o-cresol, respectively, as carbon sources. Use of [U-(14)C]benzene and [ring-(14)C]toluene verified that a small fraction of these two compounds was metabolized within 7 days to water-soluble products and CO(2) by these nongrowing cell suspensions. Our investigation also revealed that the nominal medium can be simplified by eliminating the yeast extract and using a higher tryptone concentration (0.2%) without affecting the growth and BTEX degrading activities of these cells. (c) 1995 John Wiley & Sons, Inc.     

The effect of sodium chloride on enzyme activities from four halophyte species of chenopodiaceae

The in vitro effect of sodium chloride on the enzyme activity of four halophytes, Beta vulgaris ssp. maritima (L.) Thell., Halimione portulacoides (L.) Aell., Salicornia ramosissima Woods and Suaeda maritima (L.) Dum. was investigated. The activity was, in general, affected by sodium chloride in a similar manner to that reported for salt sensitive species. The most notable exceptions were the sodium chloride stimulated ATPases of Beta and Salicornia.