Occurrence of Gobiidae larvae in a tropical Brazilian estuary,with particular emphasis on the use of size classes to categorize species guilds

The structure and seasonal dynamics of larvae of the Gobiidae family in the Mucuri Estuary (Bahia, Brazil) were studied for nine consecutive years. Sampling was conducted at three stations in the lower estuary channel, between 2002 and 2010, in relation to season, day and night and tidal variations. A total of 5802 Gobiidae larvae, representing 15 taxa (12 species and three morphotypes), were collected in the Mucuri Estuary during this time. The highest mean ± s.d. density of fish larvae, 54·7 ± 79·8 larvae 100 m^?3, was recorded during the flood tide and night sampling. Ctenogobius boleosoma was the most abundant species (68%), being dominant in the rainy and dry seasons and had a long reproductive period. This species was classed as a marine estuarine‐opportunist because it was observed at high frequencies and active larvae entering the estuary between 6·1 and 12·0 mm standard length (L_S). Gobionellus oceanicus, second in abundance (12%), occurred only in later larval stages but did not use the estuary as a preferred location for spawning, being classed a marine estuarine dependent. Microgobius carri (11%) was represented in all L_S classes and was resident in the estuary for spawning, remaining there throughout their life cycle. The other species were considered rare due to their low densities and could not be classified in any guild.     

Occurrence of Larval and Early Juvenile Fishes in the Surf Zone Adjacent to two Intermittently Open Estuaries, South Africa

I monitored larval and early juvenile fishes in the surf zone adjacent to two warm temperate, intermittently open estuaries in South Africa. Mugilidae (59–67%) dominated fish assemblages in the surf zones adjacent to the Van Stadens and Kabeljous estuaries. Other dominant families included the Atherinidae, Sparidae and Soleidae. The most abundant species caught during the study were the catadromous mugilid Myxus capensis, in a postflexion or early juvenile stage of development, and the sparid Rhabdosargus holubi, in a postflexion stage of development. Species displaying a degree of dependence on estuaries during the early phase of their life cycle dominated (96–98%) surf zone catches. Most fish encountered were at the postflexion stage of larval development. Larval and early juvenile fishes were more abundant during the summer and autumn months with density peaking several-fold during natural estuary opening events, particularly in the surf zone adjacent to the Kabeljous Estuary. Decreases in salinity showed a significant relationship with increases in fish density during a March opening event in the surf adjacent to the Kabeljous Estuary where catches were concentrated along a current-driven estuarine plume. Catches adjacent to the Van Stadens Estuary also increased considerably during two smaller opening events in March and November although salinity played no statistically significant role in these increased catches. Results from the surf adjacent to the Van Stadens Estuary suggested that either very small amounts of estuarine water entering the surf zone can elicit an accumulation response by estuary-dependent larval and early juvenile fishes or that an additional characteristic of estuary/river water, other than salinity per se, is aiding the cueing process.     

Do different degrees of human activity affect the diet of Brazilian silverside Atherinella brasiliensis?

The aim of the present study was to test whether different degrees of human activity affect the diet of the Brazilian silverside Atherinella brasiliensis in two tropical estuaries. Fish were collected along the salinity gradient of two Brazilian estuaries, the heavily impacted Paraiba Estuary and the less impacted Mamanguape Estuary, in the dry and wet seasons. The findings confirm that A. brasiliensis has generalist feeding habits and is able to change its diet under different environmental conditions. The results indicate clear spatial (i.e. along the estuarine gradient) changes in diet composition in both estuaries, but diet was also influenced by the degree of anthropogenic disturbance. During the wet season in the nutrient enriched Paraiba Estuary, when human activity was higher, the diet of A. brasiliensis was poorer and dominated by few dietary items, reflecting the potential impoverishment of prey items in this heavily disturbed system. The specimens collected in the most affected estuary also had a greater frequency of micro‐plastics and parasites in their stomachs, reflecting the greater degree of human disturbance in the estuary. The present findings suggest that the diet of A. brasiliensis could be a useful indicator of changes in the ecological quality of these and other tropical estuaries of the western Atlantic Ocean.     

Fish assemblage structure in an estuary of the Atlantic Forest biodiversity hotspot (southern Brazil)

We described the fish assemblage in the estuary of the Guaraguaçu River (one of the largest tributaries of the Paranaguá Bay Estuary, located within Brazil’s Atlantic Forest Biosphere Reserve) from June 2005 to May 2006, and assessed the seasonal and spatial effects of abiotic environmental attributes on the fish assemblage structure. Despite some oscillations in salinity, the upper and lower estuaries had year-round persistent oligohaline and polyhaline conditions, respectively. Despite high species richness (55 species), the Guaraguaçu River Estuary fish community contains a few dominant taxa; 11% of the richness accounts for >60% of its density and biomass. The most abundant species (in terms of both biomass and density) was Atherinella brasiliensis. Species whose densities were most strongly associated with the upper estuary were Centropomus parallelus, Ctenogobius schufeldti, Eucinostomus melanopterus, Platanichthys platana, Trinectes paulistanus, and Eugerres brasilianus. Those whose densities were most strongly associated with the lower estuary were A. brasiliensis, Sphoeroides greeleyi, Eucinostomus argenteus, Sphoeroides testudineus, Diapterus rhombeus, and Harengula clupeola. Throughout the year, canonical correspondence analysis identified: (1) the pattern of horizontal stratification of salinity along the river as being the most important variable for explaining most of the fish fauna structure; and (2) a strong relationship between the fish fauna and the salinity gradient along the estuary. Analysis of similarity further confirmed that each estuarine zone supports a year-round persistent and relatively homogeneous fish species assemblage. Total mean density and biomass remained constant over time in each estuarine habitat, but density shifted in the most abundant species, which appears related to recruitment patterns. Such species and abundance persistence likely occurs because seasonal rainfall-induced changes in river discharge are not sufficient to significantly shift runoff and salinity and thus fish assemblage structure (species composition, density and biomass) along the estuary. Such a lack of seasonal fish fauna movement as a response to changes in river flow contrasts with other estuarine systems around the world.     

The composition and community structure of the ichthyofauna of the upper Scheldt estuary: synthesis of a 10-year data collection (1991–2001)

Fish collections on the cooling water filter screens of the Doel power plant were used to analyse temporal trends in estuarine fish populations of the upper Scheldt estuary, Belgium. Between 1991 and 2001, 62 species shared the estuary, with 15 species present at any one time. Identified were 23 marine stragglers, 16 freshwater species and four diadromous species, but their contribution to the total catch was insignificant. In terms of numbers, marine estuarine opportunists (17 species) mainly occurring as juveniles and estuarine residents (two species) were the dominant life cycle categories. Six fish species contributed to >97% of the total catch: three Pomatoschistus species [P. minutus (32%), P. microps (30%) and P. lozanoi (6%)], two Clupeidae [Clupea harengus (16%) and Sprattus sprattus (8%)] and Syngnathus rostellatus (5%). Abundance of almost all species in the estuary was highly seasonal and characterized by pronounced abundance peaks. Ordination of the data showed that variability in the temporal structure of estuarine fish community was first determined by differences in annual recruitment and then by predictable, cyclical patterns of species abundance.     

Parotocinclus jacksoni,a new hypoptopomatine catfish (Siluriformes: Loricariidae) from the Rio Mamanguape basin,north-eastern Brazil

A new species of Parotocinclus is described from the Rio Mamanguape basin, in the State of Paraíba, north-eastern Brazil. The new species can be distinguished from all of its congeners, except for P. bahiensis, P. cesarpintoi, P. jumbo, P. nandae and P. spilosoma, by the presence of an abdomen covered by a few small and dispersed platelets (vs. an abdomen entirely covered by large plates in adult individuals or the absence of plates in that region). The new species differs from those mentioned above with respect to several features, such as an exposed pectoral girdle and supporting odontodes medially and laterally, the number of premaxillary and dentary teeth, odontodes covering only the lateral portion of the cleithrum and the absence of irregular golden lines on the head and body (colour in vivo). The new species was collected only in the upper and middle portions of the Rio Mamanguape basin, suggesting a geographic distribution restricted to the Caatinga biome.     

Environmental influences on seasonal distribution of coastal and estuarine fish assemblages at Wemindji,eastern James Bay

Synopsis The coastal fish assemblages of Wemindji, eastern James Bay, were studied in 1987 and 1988 to describe seasonal utilization of the Maquatua River estuary and the adjacent coastal waters by marine and anadromous fishes. Fish diversity was low (11 sp.) and experimental gill net catches were highly variable between sites in the estuary and coastal waters, and also seasonally at a given site. During summer, the estuarine fishes were numerically dominated by two marine species, the fourhorn sculpin,Myoxocephalus quadricornis, and the slender eelblenny,Lumpenus fabricii, and also by juvenile cisco,Coregonus artedii, and juvenile lake whitefish,C. clupeaformis. In coastal waters, three marine species were abundant: the shorthorn sculpin,M. scorpius, the arctic sculpin,M. scorpioides and the Greenland cod.Gadus ogac. In contrast with the estuary, large (> 270 mm) cisco and lake whitefish were abundant in coastal waters indicating extensive movements of these species in James Bay during the summer. Distribution patterns were influenced by a combination of physical conditions (salinity and temperature) and biological characteristics (habitat choice, migration and reproduction) depending on the season.     

Does the flatfish community of the Mondego estuary (Portugal) reflect environmental changes?

Temporal and spatial patterns of abundance of the flatfish community in the Mondego estuary were investigated from 2003 to 2007, based on monthly beam trawl samples. During the study period there was a severe drought, with consequential reductions in river runoff. A total of eight flatfish species occurred within the estuary, with seasonal specific richness and abundance varying considerably. It was possible to identify three main groups: one composed of species present throughout the study period and in high densities: Platichthys flesus and Solea solea (maximum densities 3.7 and 4.1 Ind 1000 m^?2, respectively); a second group of less abundant but regularly present species: Scophthalmus rhombus and Solea senegalensis (maximum densities 0.2 and 0.3 Ind 1000 m^?2, respectively); and a third group of occasional species that occurred only during the drought period: Arnoglossus laterna, Buglossidium luteum, Dicologlossa hexophthalma and Pegusa lascaris. Flatfish distribution patterns varied according to the estuarine use guild: marine‐estuarine dependent fish occurred mainly in the upper reaches, while marine stragglers and marine‐estuarine opportunists occurred mostly in the downstream areas. Species with more northern latitudinal affinities were the most affected by the drought, related with a lesser extent of river plumes to the coastal area, resulting in a reduction in half of the abundance levels. However, flatfish species with more southern affinities increased in abundance during the drought, benefiting also from an increase in estuarine water temperature. Early summer salinity and precipitation values were good proxies for estimating abundance levels of P. flesus and S. solea, respectively, emphasizing the importance of hydrodynamics for the recruitment and abundance of these commercially important species.     

Characteristics of the ichthyofauna of a temperate microtidal estuary with a reverse salinity gradient,including inter‐decadal comparisons

Data on the fish fauna of the Leschenault Estuary on the lower west coast of Australia were collected and used as a model to elucidate the characteristics of permanently open estuaries with a reverse salinity gradient, which undergo seasonal changes similar to many other estuaries with Mediterranean climate. Focus was placed on determining (1) the relationships of the number of species, density, life cycle category and species composition of fishes with region (within estuary), season and year and salinity, (2) whether species are partitioned along the lengths of such systems and (3) the extent and significance of any inter‐decadal changes in species composition. The analyses and interpretation involved using multi‐factorial permutational multivariate analysis of variance (PERMANOVA) and analysis of similarity (ANOSIM) designs, and three new or recently published visualization tools, i.e. modified non‐metric multidimensional scaling (nMDS) plots, coherent species curves and segmented bubble plots. The base, lower, upper and apex regions of the Leschenault Estuary, along which the salinity increased in each season except in winter when most rainfall occurs, were sampled seasonally for the 2 years between winter 2008 and autumn 2010. Estuarine residents contributed twice as many individuals, but less than half the number of species as marine taxa. While the numbers of marine species and estuarine residents declined between the base or lower and apex regions, the individuals of marine species dominated the catches in the base region and estuarine residents in the other three regions. Ichthyofaunal composition in each region underwent conspicuous annual cyclical changes, due to time‐staggered differences in recruitment among species, and changed sequentially along the estuary, both paralleling salinity trends. Different groups of species characterized the fauna in the different regions and seasons, thereby partitioning resources among species. The ichthyofauna of the apex region, in which salinities reached 54 and temperatures 36° C, recorded the highest maximum density and, in terms of abundance, was dominated (90%) by three atherinid species, emphasizing the ability of this family to tolerate extreme conditions. Comparisons between the data for 2008–2010 and 1994 demonstrate that the spotted hardyhead Craterocephalus mugiloides and the common hardyhead Atherinomorus vaigiensis had colonized and become abundant in the Leschenault Estuary in the intervening period. This represents a southwards extension of the distribution of these essentially tropical species during a period of increasing coastal water temperatures as a result of climate change. The abundance of weed‐associated species, e.g. the western gobbleguts Ostorhinchus rueppellii and the soldier Gymnapistes marmoratus, increased, whereas that of the longfinned goby Favonigobius lateralis decreased, probably reflecting increases in eutrophication and siltation, respectively.     

A REVIEW OF THE MACROBENTHIC FAUNA OF THE MHLATHUZE ESTUARY: SETTING THE ECOLOGICAL RESERVE

Summary

This paper reviews historical and current ecological information on macrobenthos from the Mhlathuze Estuary before and after development of the Richards Bay Harbour. The fauna is described in terms of the potential influence of a change in freshwater inflow to the system and the requirements for the setting of an Ecological Reserve. Over 95% of the species recorded were primarily marine and to a lesser extent estuarine in origin. Fauna typical of sheltered, soft-bottomed marine environments inhabited the estuary, whereas estuarine fauna was limited to the canalised sections of the Mhlathuze River. Certain areas were characterised by opportunistic species indicative of disturbed or organically enriched sediments while others sustained a high diversity of more sensitive climax species, several of which are endemic to southern Africa. The majority of species belonged to the Class Polychaeta but the estuarine mudcrab Paratylodiplax blephariskios dominated the benthic biomass. The pre-feasibility stage of the Ecological Reserve Determination indicated that a reduction in freshwater input would negatively impact upon the already reduced estuarine component at the head of the estuary. Conversely, if freshwater flow to the estuary is augmented, sediment transport via the river could increase without there being an. improved catchment management policy in place.     

The fish assemblage of the Mondego estuary: composition,structure and trends over the past two decades

The fish assemblage of the Mondego estuary was studied from June 2003 to May 2004. Five areas with different environmental conditions were sampled monthly, using a 2 m beam trawl (5 mm mesh size at the cod end). To complement information, sampling was also performed, seasonally, using a 7 m otter trawl with a 10 mm mesh size. Thirty-two species were identified. Dicentrarchus labrax, Pomatoschistus microps, Pomatoschistus minutus, Solea solea, Platichthys flesus and Diplodus vulgaris were the most abundant species. Marine juvenile migrants had the highest number of species, thirteen, followed by estuarine residents with eight species. Marine species that use the estuary as nursery grounds were the most abundant in terms of density and biomass. In spring and summer, juveniles occur in the upper, oligohaline areas, but afterwards, in autumn and winter, they tend to disperse to the middle and lower areas, with higher marine influence. Comparing the results obtained in this study with those reported in the early 1990’s, a marked decrease in species richness can be noticed, which is probably due to anthropogenic factors, namely an increase in depth of the main channel and intense euthrophication processes in the middle and upper areas.     

The dynamics of the yeast community of the Tagus river estuary: testing the hypothesis of the multiple origins of estuarine yeasts

Yeasts are common inhabitants of different types of aquatic habitats, including marine and estuarine waters and rivers. Although numerous studies have surveyed yeast occurrence in these habitats, the identification of autochthonous populations has been problematic because several yeast species seem to be very versatile and therefore mere presence is not sufficient to establish an ecological association. In the present study we investigated the dynamics of the yeast community in the Tagus river estuary (Portugal) by combining a microbiological study involving isolation, quantification, and molecular identification of dominant yeast populations with the analysis of hydrological and hydrographical data. We set out to test the hypothesis of the multiple origins of estuarine yeast populations in a transect of the Tagus estuary and we postulate four possible sources: open sea, terrestrial, gastrointestinal and the estuary itself in the case of populations that have become resident. Candida parapsilosis and Pichia guilliermondii were correlated with Escherichia coli, which indicated an intestinal origin. Other cream-colored yeasts like Debaryomyces hansenii and Candida zeylanoides had similar dynamics, but no association with E. coli and quite distinct ecological preferences. They might represent a group of resident estuarine populations whose primary origin is diverse and can include marine, terrestrial, and gastrointestinal habitats. Another major yeast population was represented by Rhodotorula mucilaginosa. The cosmopolitan nature of that species and its moderate association with E. coli point to terrestrial sources as primary habitats.     

Prawn community structure in the subtropical Mfolozi–Msunduzi estuarine system,KwaZulu-Natal,South Africa

The life cycles of many marine and freshwater prawn species are closely associated with estuarine habitat. Here, the prawn community of the Mfolozi–Msunduzi estuarine system is described and the system's potential as an alternative nursery for prawns during prolonged closure of the adjacent St Lucia estuarine system is examined. Sampling was conducted at five localities in summer and winter in 2007–2012. The Mfolozi–Msunduzi Estuary is a river-dominated system with mouth condition, sediment grain size and turbidity being the most important factors affecting the structure of its prawn community. Twelve prawn species were recorded, including five marine penaeid and five freshwater palaemonid species. The prawn community was numerically dominated by freshwater Macrobrachium equidens and two penaeids, Fenneropenaeus indicus and Metapenaeus monoceros. Significant differences were recorded between summer and winter samples, with freshwater species dominating the catch in summer, while penaeid species were dominant in winter. The marked seasonal change in the prawn community was related to strong river flows during summer creating low-salinity conditions, unsuitable for penaeid postlarval development, throughout most of the system. Compared to St Lucia, the Mfolozi–Msunduzi Estuary can be regarded as a poor alternative nursery area for penaeids during the summer peak postlarval recruitment period.     

Penaeid and carid community changes in the St Lucia estuarine lake system,South Africa,under low water level,extended closed periods and marine reconnection conditions

Penaeid and carid communities were assessed in St Lucia over a wide range of saline conditions, water level conditions and mouth states, including a six-month marine connection and various connections to the Mfolozi Estuary. Samples were collected biannually in spring and autumn from November 2004 to May 2012 using seine nets. Seven penaeid and seven carid species were recorded, of which Palaemon pacificus, P. peringueyi, Penaeus indicus and Metapenaeus monoceros were the most abundant. The decline from 2004 to 2007 in both species recorded and densities of freshwater, estuarine and marine species during the initial closed period was linked to increased salinity, lack of recruitment and reduced estuarine surface area. Increased wave action and high seas following Cyclone Gamede opened the mouth in March 2007 after a 57-month closed period, resulting in recruitment of marine species, predominantly P. indicus, followed by a decline in densities after reclosure in August 2007. Increases in marine and freshwater species were evident after Mfolozi flood connections during 2008, 2009 and 2010. Highest densities were recorded after breaching in 2007 and after flood connections, highlighting the importance of a marine link to maintain the recruitment of penaeid species.     

Importance of the upper estuary as a nursery ground for fishes in Ariake Bay,Japan

To examine the importance of the upper estuarine areas of Ariake Bay as a nursery ground for fish, assemblages of larvae and juveniles were compared among various aquatic habitats. The upper estuaries of the bay (the Rokkaku and Hayatsue estuaries) are brackish, highly turbid waters with high tidal velocities, and differ substantially from the Isahaya area, which has been separated from the bay by a man-made dike, to the middle estuary (the Kikuchi estuary). Abundances of larvae and juveniles were higher in the estuaries than in the open bay and Isahaya areas. Abundant species in the upper estuaries were similar to each other, but differed from those of the middle estuary. This was primarily due to larvae and juveniles of fishes that occurred almost entirely in the upper estuaries, such as Acanthogobius hasta, Boleophthalmus pectinirostris, Coilia nasus, Cynoglossus abbreviatus, Nibea albiflora, Odontamblyopus lacepedii, Trachidermus fasciatus and Tridentiger barbatus. These results suggest that the upper estuaries play an important role as nursery grounds for fishes.     

The forth estuary: a nursery and overwintering area for North Sea fishes

The fish community of the Forth estuary, Scotland, has several components — estuarine resident species, diadromus migratory species, marine and freshwater adventitious species, marine juvenile migrants using the area as a nursery, and adults of marine species with seasonal migrations. The population changes during the period 1981–1988 in six species representative of the last two categories are described here. The species are the juvenile gadoids, whiting, Merlangius merlangus (L.) and cod, Gadus morhua L., juvenile flatfish, plaice, Pleuronectes platessa L. and common dab, Limanda limanda (L.), and the adult clupeids, sprat, Sprattus sprattus (L.) and herring, Clupea harengus L.The species' population changes are described in relation to aspects of wider significance such as commercial fishing for these species in North Sea areas. In particular, the underlying decline of the juvenile cod populations since 1981 in the Forth Estuary is discussed in relation to the recent reduction in commercial fishing quotas.     

Factors affecting seasonal variations in demersal fish assemblages at an ecocline in a tropical–subtropical estuary

Seasonal changes of fish species composition in terms of biomass, density and number of species in three areas of the main channel of the Paranaguá Estuary (axis east–west) are described in relation to seasonal fluctuations in salinity, water temperature and dissolved oxygen in the main channel. Two hundred and thirty‐four samples were collected monthly, between July 2000 and June 2001, in the main channel. Seventy‐nine species of 29 families were captured with a total estimated mean density and biomass of 1513 individuals ha^?1 and 34 kg ha^?1, respectively. The number of species and total mean density differed significantly among areas and seasons, but the total mean biomass differed only significantly throughout the ecocline (areas) of the Paranaguá Estuary. For the most abundant species, the mean densities of Stellifer rastrifer, Aspistor luniscutis, Menticirrhus americanus, Sphoeroides testudineus, Cynoscion leiarchus and Symphurus tesselatus (with the exception of Cathorops spixii and Genidens genidens) differed significantly among seasons. The mean biomass of these species, with the exception of G. genidens, S. rastrifer, A. luniscutis and S. testudineus, also differed significantly for the factor seasons. Area was a significant factor for the eight most abundant species (density and biomass), except S. testudineus (density), G. genidens, C. leiarchus and S. tesselatus (biomass). The season v. area interaction term was significant for C. leiarchus (density). Most of these differences occurred during the rainy season when fishes concentrated principally in the middle of the estuary, where the salinity remained stable. It is suggested that the salinity stability in the middle of the estuary is the main reason why the most estuarine resident fish species move downstream and remain there, regardless of the increased freshwater runoff. Moreover, canonical correspondent analysis output detected that during the late rainy season, the variable dissolved oxygen (P < 0·01) was the most important environmental variable, responsible for structuring patterns of fishes assemblages in the west–east axis of Paranaguá Estuary. During the end of the dry season, both salinity (P < 0·01) and dissolved oxygen (P < 0·05) were responsible for this ecological feature in the estuary. Finally, it was possible to detect that juveniles and adults of some important species respond differently to seasonal fluctuations of the ecocline‐determining environmental factors. This behaviour is suggested as a strategy to avoid competition and predation during the rainy season in the middle estuary. The Paranaguá Estuary did not fit with the pre‐existing models described in the tropical and subtropical estuarine fish literature since its main channel fish assemblages remained within its bounds even during the rainy season.     

Dynamics of the shallow-water fish assemblage of the Patos Lagoon estuary (Brazil) during cold and warm ENSO episodes

In southern Brazil, cold ( La Niña ) and warm ( El Niño ) episodes of the El Niño Southern Oscillation (ENSO) phenomenon cause drought and high rainfall, respectively. The low precipitation and freshwater outflow associated with La Niña during 1995–1996 were associated with an increase in the abundance of marine species in the Patos Lagoon estuary. During the 1997–1998 El Niño , high precipitation and river discharge were associated with low abundance of marine species in the estuary. ANOVA results showed a higher abundance during La Niña than El Niño for estuarine resident (RES) and estuarine dependent (DEP) fishes. During La Niña catch per unit of effort (CPUE) of RES increased from the marine to estuarine area, but during El Niño CPUE increased at the marine area and diminished during summer and autumn in some estuarine sites. DEP fishes had an opposite abundance pattern. During La Niña , these fishes were abundant at the coastal marine area and along some estuarine sites, but during El Niño , CPUE remained almost the same at the marine area but dropped along some estuarine sites. These different abundance patterns for dominant fish groups yielded a positive interaction between stations and climatic events. With higher river discharge and the consequent decline of dominant euryhaline fishes, such as Mugil platanus and Atherinella brasiliensis , freshwater species increased in abundance and richness in the shallow waters of the stuary. The ENSO phenomenon influences precipitation and estuarine salinity in southern Brazil and thereby seems to have a strong influence on recruitment, immigration, and emigration dynamics of fish species living within and adjacent to estuarine habitats.     

Estuarine and scalar patterns of invasion in the soft-bottom benthic communities of the San Francisco Estuary

The spatial patterns of nonindigenous species in seven subtidal soft-bottom communities in the San Francisco Estuary were quantified. Sixty nonindigenous species were found out of the 533 taxa enumerated (11%). Patterns of invasion across the communities were evaluated using a suite of invasion metrics based on the abundance or species richness of nonindigenous species. Patterns of invasion along the estuarine gradient varied with the invasion metric used, and the ecological interpretation of the metrics is discussed. Overall, the estuarine transition community located in the estuarine turbidity maximum zone (mean 5 practical salinity unit (psu)), main estuarine community (mean 16 psu), and marine muddy community (mean 28 psu) were more invaded than two fresh-brackish communities (mean < 1 psu) and a marine sandy community (mean 27 psu). Nonindigenous species were numerically dominant over much of the Estuary, making up more than 90% of the individuals in two communities. The percentage of the total species composed of nonindigenous species increased at smaller spatial scales: 11% at the estuary (gamma) scale, 21% at the community (alpha) scale, and 42% at the grab (point) scale. Wider spatial distributions of nonindigenous species and a relatively greater percentage of rare native species may have resulted in this pattern. Because of this scale dependency, comparisons among sites need to be made at the same spatial scale. Native species were positively correlated with nonindigenous species in several of the communities, presumably due to similar responses to small-scale differences in habitat quality. The rate of invasion into the soft-bottom communities of the San Francisco Estuary appears to have increased over the last one to two decades and many of the new introductions have become numerically dominant.