鱼类抗冻蛋白的研究进展

抗冻蛋白 (AFP)可非依数性地降低溶液冰点 ,对冷冻细胞和胚胎具有高效的保护作用。目前的研究表明 ,不同的鱼类抗冻蛋白尽管都具有降低冰点的活性 ,但在结构和组成上又存在有较大的差异。根据其结构和化学组成 ,一般将它们分为 4大类 :AFP I、AFP II、AFP III和AFP IV。抗冻蛋白的编码基因为基因组中多拷贝基因家族的成员 ,其基因表达在很大程度上要受到季节变化的影响。目前 ,普遍使用吸附抑制假说来解释AFP非依数性降低溶液冰点的分子机制 ,但不同类抗冻蛋白在降低溶液冰点时的作用模式却不尽相同。现就鱼类的 4类抗冻蛋白的结构组成、基因性质、抗冻机制及其在细胞和胚胎冻存中的作用等领域的研究进展进行概括性综述     

抗冻蛋白结构与抗冻机制

抗冻蛋白(amifreeze proteins,AFPs)是20世纪60年代从极地鱼血淋巴中分离的一种大分子抗冻剂,迄今为止科学工作者已从陆地昆虫、植物、细菌和真菌等各类生物中分离到多种抗冻蛋白,并测得了它们的基因序列及一些晶体结构,近些年的工作主要集中在该类蛋白质抗冻机制的研究上。抗冻蛋白具有广泛的应用前景,它不但可以应用于食物的冷鲜贮存及移植器官的低温保存,还可通过转基因提高经济作物的抗冻能力。     

美洲鲽抗冻蛋白基因的亚克隆及构建转基因鱼的表达载体

用限制性内切酶Ｐｓｔ Ｉ部分消解含有美洲鲽抗冻蛋白基因的ｐＣＴ５质粒,分离得到３２４ｂｐ的片段,将此片段亚克隆到ｐＵＣ１９质粒中,筛选到ｐＵＣ－ＡＦ重组子。从ｐＵＣ－ＡＦ重组子中,用ＢａｍＨＩ和ＨｉｒｄⅢ切下３２４ｂｐ的抗冻蛋白基因,再重组到含有ＳＶ４０病毒启动子的ｐＫＳＶ－１０的载体中,构建成转基因鱼的表达载体,此表达载何可用于鱼的基因转移的研究。     

南极eel Pout(Lycodichthys dearborni)多聚体Ⅲ型抗冻蛋白基因的克隆及进化分析

冰冻海洋中生存的南极eelpout（Lycodichthys dearborni）体内能合成高浓度的Ⅲ型抗冻蛋白（AFPⅢ）。为了寻找新的AFPⅢ基因，构建了L．dearborni肝脏cDNA文库。通过斑点杂交筛选此文库，发现一个2．87kb的cDNA克隆，LD12。序列分析采用DNAssist2．0和ClustalX 1．8软件。结果显示，LDl2分子由12个串联重复的片段构成，每一个片段编码一个61个氨基酸（aa）的Ⅲ型抗冻蛋白分子和一个9aa的连接子。这是第一次在合成AFPⅢ的极地鱼类中发现这样的多聚蛋白结构基因。有趣的是，组成、结构和起源都不相同的抗冻糖蛋白AFGP，其基因也呈现类似的多聚蛋白结构的现象。因此，这种独特的多聚基因结构可能是鱼类基因组在适应极端寒冷的环境中采取的一种普遍方式。     

抗冻蛋白活性的差示扫描量热测定及其吸附-抑制机制

用差示扫描量热技术(DSC)测定了从黄粉虫(Tenebrio molitor)幼虫体内提取的抗冻蛋白(AFP)的活性,结果表明AFP活性随其浓度的增加及初始冰晶量的减少而增大,这与AFP对冰晶的吸附-抑制机制相一致。     

准噶尔小胸鳖甲抗冻蛋白MpAFP698在真核细胞中的表达与鉴定

目的:构建真核表达质粒pEGFP-N1-mpafp698,转染人胚肾293T细胞,并表达准噶尔小胸鳖甲抗冻蛋白MpAFP698.方法:PCR扩增出mpafp698序列,将其克隆入本室保存的真核表达载体pEGFP-N1中,转染293T细胞;利用RT-PCR、流式细胞仪、免疫荧光、Western 印迹检测蛋白表达.结果:构...     

昆虫抗冻蛋白的研究进展

抗冻蛋白是具有热滞效应,能结合并抑制新的冰晶生长,能抑制冰的重结晶的一类蛋白质。近几年来,昆虫抗冻蛋白的研究取得了较快的发展,本文就昆虫抗冻蛋白的结构,活性的调控,功能与应用做一综述。     

昆虫抗冻蛋白的研究进展

抗冻蛋白是一类与冰晶有亲合力,能够与冰晶结合并抑制冰晶生长的蛋白或糖蛋白。自20世纪60年代以来,研究人员已经分别从鱼类、昆虫、植物、真菌和细菌中发现多种抗冻蛋白。其中已知鱼类抗冻蛋白有5种,也是研究最详细的。但是,近几年来发现昆虫抗冻蛋白活性普遍比较高,因此受到研究人员重视,研究取得了较快的发展。主要讨论昆虫抗冻蛋白的结构特点、抗冻活性、作用机制和应用,并分析目前的研究现状提出一些待解决的问题,以期望对昆虫抗冻蛋白的研究进行比较系统化的整理。     

Characterization of the Adhesive Properties of the Type IIb Subfamily Receptor Protein Tyrosine Phosphatases

Abstract

Receptor protein tyrosine phosphatases (RPTPs) have cell adhesion molecule–like extracellular domains coupled to cytoplasmic tyrosine phosphatase domains. PTPμ is the prototypical member of the type IIb subfamily of RPTPs, which includes PTPρ, PTPκ, and PCP-2. The authors performed the first comprehensive analysis of the subfamily in one system, examining adhesion and antibody recognition. The authors evaluated if antibodies that they developed to detect PTPmu also recognized other subfamily members. Notably, each antibody recognizes distinct subsets of type IIb RPTPs. PTPμ, PTPρ, and PTPκ have all been shown to mediate cell-cell aggregation, and prior work with PCP-2 indicated that it can mediate bead aggregation in vitro. This study reveals that PCP-2 is unique among the type IIb RPTPs in that it does not mediate cell-cell aggregation via homophilic binding. The authors conclude from these experiments that PCP-2 is likely to have a distinct biological function other than cell-cell aggregation.     

抗冷冻蛋白基因(afp)转化大豆的研究

目的:通过农杆菌介导法遗传转化大豆。方法:通过热激法将质粒pCAAFP66导入根癌农杆菌菌株EHA105中获得含有抗冷冻蛋白基因(afp)及除草剂抗性筛选标记基因(bar)的农杆菌工程菌株;以大豆品种华春6号和马祖1号种子的下胚轴为外植体,经过农杆菌介导将抗冷冻蛋白基因导入大豆基因组中,在含有除草剂草丁膦(PPT)的培养基中筛选、并经过PCR鉴定获得大豆转化植株。结果:PPT的最佳筛选浓度为1.0mg/L,华春6号和马祖1号的阳性植株数分别为6株和2株,转化效率分别为3.70%和0.94%。结论:不同基因型大豆的转化率存在差异,抗冷冻蛋白基因成功遗传转化进大豆细胞中。     

Physical Basis of Functioning of Antifreeze Protein

Molecular Biology - Antifreeze proteins, expressed in cold-blooded organisms, prevent ice formation in their bodies, and thus help them to survive in extremely cold winter temperatures. However,...     

The Refined Crystal Structure of an Eel Pout Type III Antifreeze Protein RD1 at 0.62-Å Resolution Reveals Structural Microheterogeneity of Protein and Solvation

RD1 is a 7-kDa globular protein from the Antarctic eel pout Lycodichthys dearborni. It belongs to type III of the four types of antifreeze proteins (AFPs) found in marine fishes living at subzero temperatures. For type III AFP, a potential ice-binding flat surface has been identified and is imbedded with side chains capable of making hydrogen bonds with a specific lattice plane on ice. So far, all crystallographic studies on type III AFPs were carried out using the Atlantic ocean pout Macrozoarces americanus as the source organism. Here we present the crystal structure of a type III AFP from a different zoarcid fish, and at an ultra-high resolution of 0.62 Å. The protein fold of RD1 comprises a compact globular domain with two internal tandem motifs arranged about a pseudo-dyad symmetry. Each motif of the “pretzel fold” includes four short β-strands and a 3₁₀ helix. There is a novel internal cavity of 45 ų surrounded by eight conserved nonpolar residues. The model contains several residues with alternate conformations, and a number of split water molecules, probably caused by alternate interactions with the protein molecule. After extensive refinement that includes hydrogen atoms, significant residual electron densities associated with the electrons of peptides and many other bonds could be visualized.     

抗冻蛋白结构基因片段的克隆

为了研究和开发利用抗冻蛋白或多肽,木文通过聚合酶链式反应（ＰＣＲ）合成了抗冻蛋白１１０ｂｐ的结构基因片段,然后将该基因片段克隆到大肠杆菌质粒载体Ｐ（Ｂｌｕｅｓｃｒｉｐｔ）Ⅱｋｓ＋／－上,获得了重组质粒,经酶切证明,获得的重组质粒中含有抗冻蛋白结构基因片段,以供该基因在大肠杆菌或酵母中表达抗冻蛋白。     

Bacteriology of Spoilage of Fish Muscle: III. Characterization of Spoilers

A total of 807 bacterial isolates from fresh and spoiling fillets of English sole (Parophrys vetulus) stored at 5 C were classified as to genus and tested for various biochemical activities, including the ability to spoil sterile muscle press juice at 5 C. Production of off-odor, volatile reducing substances, and trimethylamine was used to estimate spoilage. It was found that (i) spoilers could be distinguished from nonspoilers on the basis of the juice spoilage test, (ii) differentiation between spoilers and nonspoilers could not be achieved by means of the usual biochemical tests, (iii) no micrococci, flavobacteria, and “coryneforms” were spoilers, (iv) certain specific subgroups of the genus Pseudomonas consisted exclusively of spoilers whereas others were inactive, (v) the genus Achromobacter likewise consisted of spoilers and nonspoilers, and (vi) “coliforms” could produce spoilage. It was concluded that a method is now available to determine directly and unequivocally the role played in spoilage by various bacterial groups and that it is no longer necessary to rely on indirect evidence.     

Characterization of the Interaction between the Salmonella Type III Secretion System Tip Protein SipD and the Needle Protein PrgI by Paramagnetic Relaxation Enhancement

Many Gram-negative bacteria that cause major diseases and mortality worldwide require the type III secretion system (T3SS) to inject virulence proteins into their hosts and cause infections. A structural component of the T3SS is the needle apparatus, which consists of a base, an external needle, and a tip complex. In Salmonella typhimurium, the external needle is assembled by the polymerization of the needle protein PrgI. On top of this needle sits a tip complex, which is partly formed by the tip protein SipD. How SipD interacts with PrgI during the assembly of the T3SS needle apparatus remains unknown. The central region of PrgI forms an α-helical hairpin, whereas SipD has a long central coiled-coil, which is a defining structural feature of other T3SS tip proteins as well. Using NMR paramagnetic relaxation enhancement, we have identified a specific region on the SipD coiled-coil that interacts directly with PrgI. We present a model of how SipD might dock at the tip of the needle based on our paramagnetic relaxation enhancement results, thus offering new insight about the mechanism of assembly of the T3SS needle apparatus.     

Preparation and Some Properties of Type I Collagen from Fish Scales

Soluble collagen from fish (sardine) scales was yielded at about 5% with 0.5 m acetic acid after demineralization with EDTA, while a great portion of the collagen remained insoluble. The solubility of this insoluble collagen was about 20% at 45°C (denaturation temperature of soluble collagen) for 24 h. The remaining 80% of the insoluble collagen was denatured in the form of insoluble gelatin, and that may be an interesting food material.     

Process of Protein Transport by the Type III Secretion System

The type III secretion system (TTSS) of gram-negative bacteria is responsible for delivering bacterial proteins, termed effectors, from the bacterial cytosol directly into the interior of host cells. The TTSS is expressed predominantly by pathogenic bacteria and is usually used to introduce deleterious effectors into host cells. While biochemical activities of effectors vary widely, the TTSS apparatus used to deliver these effectors is conserved and shows functional complementarity for secretion and translocation. This review focuses on proteins that constitute the TTSS apparatus and on mechanisms that guide effectors to the TTSS apparatus for transport. The TTSS apparatus includes predicted integral inner membrane proteins that are conserved widely across TTSSs and in the basal body of the bacterial flagellum. It also includes proteins that are specific to the TTSS and contribute to ring-like structures in the inner membrane and includes secretin family members that form ring-like structures in the outer membrane. Most prominently situated on these coaxial, membrane-embedded rings is a needle-like or pilus-like structure that is implicated as a conduit for effector translocation into host cells. A short region of mRNA sequence or protein sequence in effectors acts as a signal sequence, directing proteins for transport through the TTSS. Additionally, a number of effectors require the action of specific TTSS chaperones for efficient and physiologically meaningful translocation into host cells. Numerous models explaining how effectors are transported into host cells have been proposed, but understanding of this process is incomplete and this topic remains an active area of inquiry.