Shoot phytochrome B modulates reactive oxygen species homeostasis in roots via abscisic acid signaling in Arabidopsis

Underground roots normally reside in darkness. However, they are often exposed to ambient light that penetrates through cracks in the soil layers which can occur due to wind, heavy rain or temperature extremes. In response to light exposure, roots produce reactive oxygen species (ROS) which promote root growth. It is known that ROS‐induced growth promotion facilitates rapid escape of the roots from non‐natural light. Meanwhile, long‐term exposure of the roots to light elicits a ROS burst, which causes oxidative damage to cellular components, necessitating that cellular levels of ROS should be tightly regulated in the roots. Here we demonstrate that the red/far‐red light photoreceptor phytochrome B (phyB) stimulates the biosynthesis of abscisic acid (ABA) in the shoots, and notably the shoot‐derived ABA signals induce a peroxidase‐mediated ROS detoxification reaction in the roots. Accordingly, while ROS accumulate in the roots of the phyb mutant that exhibits reduced primary root growth in the light, such an accumulation of ROS did not occur in the dark‐grown phyb roots that exhibited normal growth. These observations indicate that mobile shoot‐to‐root ABA signaling links shoot phyB‐mediated light perception with root ROS homeostasis to help roots adapt to unfavorable light exposure. We propose that ABA‐mediated shoot‐to‐root phyB signaling contributes to the synchronization of shoot and root growth for optimal propagation and performance in plants.     

Effects of red and far-red light on cell division in the shoot apex ofSilene coeli-rosa L.

Summary 28-day-old plant ofSilene coeli-rosa were exposed at 1,700 hours to 5 or 10 minutes red light, 5 or 10 minutes far-red light, red followed by far-red, far-red followed by red or maintained in darkness. Measurements of the proportions of cells with the 2 C and 4 C amounts of DNA in the shoot apex of the plants, sampled at 2,000 hours, showed that far-red light promoted an increase in the G2 proportion whereas red light resulted in an increase in the G1 proportion of the cell cycle, relative to the dark controls. Moreover these changes were red, far-red reversible. All light treatments resulted in increases in the mitotic index in the apex compared with the dark controls, suggesting increases in the growth rate. The data implicate phytochrome in a low energy response and suggest that, in the shoot apex, G1 is shortened markedly following exposure to farred light, whilst G2 is shortened the most following exposure to red light. The results are discussed in relation to flower-initiation.     

Phytochrome regulation of endogenous bud development in root cultures of Convolvulus arvensis

Summary Buds produced endogenously from dark-grown Convolvulus root segments do not elongate more than a few millimeters. Red-light exposures given repeatedly during the culture period induce the buds to elongate and to develop a morphology characteristic of etiolated shoots. Far-red light exposure following each red exposure completely reverses the promotive effect of red light. The role of light in regulating both root geotropism and bud development is discussed as it relates to the developmental pattern of Convolvulus.This work was supported in part by U.S. Public Health Service grant No. GM-16353.     

Root phototropism: from dogma to the mechanism of blue light perception

In roots, the “hidden half” of all land plants, gravity is an important signal that determines the direction of growth in the soil. Hence, positive gravitropism has been studied in detail. However, since the 19th century, the response of roots toward unilateral light has also been analyzed. Based on studies on white mustard (Sinapis alba) seedlings, botanists have concluded that all roots are negatively phototropic. This “Sinapis-dogma” was refuted in a seminal study on root phototropism published a century ago, where it was shown that less then half of the 166 plant species investigated behave like S. alba, whereas 53% displayed no phototropic response at all. Here we summarize the history of research on root phototropism, discuss this phenomenon with reference to unpublished data on garden cress (Lepidium sativum) seedlings, and describe the effects of blue light on the negative bending response in Thale cress (Arabidopsis thaliana). The ecological significance of root phototropism is discussed and the relationships between gravi- and phototropism are outlined, with respect to the starch-statolith-theory of gravity perception. Finally, we present an integrative model of gravi- and blue light perception in the root tip of Arabidopsis seedlings. This hypothesis is based on our current view of the starch-statolith-concept and light sensing via the cytoplasmic red/blue light photoreceptor phytochrome A and the plasma membrane-associated blue light receptor phototropin-1. Open questions and possible research agendas for the future are summarized.     

Non-photosynthetic effects of red and far-red light on root-nodule formation by leguminous plants

Summary Nodulation of pea and broad bean plants grown in the light was found to be reduced when the roots were exposed to far-red light for 5–15 minutes daily during 5 consecutive days following inoculation with nodule bacteria. Similar results were obtained following a single exposure to far-red light during a period of 15 minutes at the 3rd or 4th day after inoculation. When the roots were exposed to far-red light either before inoculation or during the first two days afterwards there were either no effects or only slight effects on nodulation The inhibitory effect of far-red light on nodulation was partly reduced by subsequent exposure to red light, provided that the same part of the plant was exposed to both red and far-red light,viz either the root or the shoot. When different parts of the plant were exposed to red and far-red light respectively, there was no interaction between the two kinds of light on nodulation. Plants whose roots were exposed to far-red light did not subsequently show stem elongation.Nodules were found to develop on the roots of pea plants grown in the dark, provided that the plants were kept at or below 22°C. At 25°C nodulation was almost absent. Nodulation was decreased by addition of kinetin and IAA. In contrast to plants grown in the light pea plants grown in the dark, inoculated with either an effective or ineffective strain of Rhizobium, developed equal numbers of nodules. Exposure to red light slightly increased the percentage of nodulated plants but decreased the number of nodules per plant. Exposure to far-red light slightly decreased both the percentage of nodulated plants and the number of nodules per plant. The effect of far-red light was counteracted by red light andvice versa.     

Early responses of maize seedlings to Cu stress include sharp decreases in gibberellins and jasmonates in the root apex

Copper (Cu) interferes with numerous biological functions in plants, including plant growth, which is partly governed by plant hormones. In the present study, Cu stress effect on the roots of pre-emerging maize seedlings in terms of growth, nutrient composition, protein modifications, and root hormone homeostasis was investigated, focusing on possible metabolic differences between the root apex and the rest of the root tissues. Significant decreases in root length and root biomass after 72 h of Cu exposure (50 and 100 μM CuCl₂), accompanied by reductions in Ca, Mg, and P root contents, were found. Cu also generated cell redox imbalance in both root tissues and revealed by altered enzymatic and non-enzymatic antioxidant defenses. Oxidative stress was evidenced by an increased protein carbonylation level in both tissues. Copper also induced protein ubiquitylation and SUMOylation and affected 20S proteasome peptidase activities in both tissues. Drastic reductions in ABA, IAA, JA (both free and conjugated), GA3, and GA4 levels in the root apex were detected under Cu stress. Our results show that Cu exposure generated oxidative damage and altered root hormonal homeostasis, mainly at the root apex, leading to a strong root growth inhibition. Severe protein post-translational modifications upon Cu exposure occurred in both tissues, suggesting that even when hormonal adjustments to cope with Cu stress occurred mainly at the root apex, the entire root is compromised in the protein turnover that seems to be necessary to trigger and/or to sustain defense mechanisms against Cu toxicity.

     

Phytochromes A and B mediate red-light-induced positive phototropism in roots

The interaction of tropisms is important in determining the final growth form of the plant body. In roots, gravitropism is the predominant tropistic response, but phototropism also plays a role in the oriented growth of roots in flowering plants. In blue or white light, roots exhibit negative phototropism that is mediated by the phototropin family of photoreceptors. In contrast, red light induces a positive phototropism in Arabidopsis roots. Because this red-light-induced response is weak relative to both gravitropism and negative phototropism, we used a novel device to study phototropism without the complications of a counteracting gravitational stimulus. This device is based on a computer-controlled system using real-time image analysis of root growth and a feedback-regulated rotatable stage. Our data show that this system is useful to study root phototropism in response to red light, because in wild-type roots, the maximal curvature detected with this apparatus is 30 degrees to 40 degrees, compared with 5 degrees to 10 degrees without the feedback system. In positive root phototropism, sensing of red light occurs in the root itself and is not dependent on shoot-derived signals resulting from light perception. Phytochrome (Phy)A and phyB were severely impaired in red-light-induced phototropism, whereas the phyD and phyE mutants were normal in this response. Thus, PHYA and PHYB play a key role in mediating red-light-dependent positive phototropism in roots. Although phytochrome has been shown to mediate phototropism in some lower plant groups, this is one of the few reports indicating a phytochrome-dependent phototropism in flowering plants.     

The roles of phytochromes in elongation and gravitropism of roots

Gravitropic orientation and the elongation of etiolated hypocotyls are both regulated by red light through the phytochrome family of photoreceptors. The importance of phytochromes A and B (phyA and phyB) in these red light responses has been established through studies using phy mutants. To identify the roles that phytochromes play in gravitropism and elongation of roots, we studied the effects of red light on root elongation and then compared the gravitropic curvature from roots of phytochrome mutants of Arabidopsis (phyA, phyB, phyD and phyAB) with wild type. We found that red light inhibits root elongation approximately 35% in etiolated seedlings and that this response is controlled by phytochromes. Roots from dark- and light-grown double mutants (phyAB) and light-grown phyB seedlings have reduced elongation rates compared with wild type. In addition, roots from these seedlings (dark/light-grown phyAB and light-grown phyB) have reduced rates of gravitropic curvature compared with wild type. These results demonstrate roles for phytochromes in regulating both the elongation and gravitropic curvature of roots.     

Accumulation rate of ABA in detached maize roots correlates with root water potential regardless of age and branching order

How much ABA can be supplied by the roots is a key issue for modelling the ABA-mediated influence of drought on shoot physiology. We quantified accumulation rates of ABA ( S _ABA) in maize roots that were detached from well-watered plants and dehydrated to various extents by air-drying. S _ABA was estimated from changes in ABA content in root segments incubated at constant relative water content (RWC). Categories of root segments, differing in age and branching order, were compared (root branches, and nodal roots subdivided into root tips, subapical unbranched sections, and mature sections). All categories of roots accumulated ABA, including turgid and mature tissues containing no apex. S _ABA measured in turgid roots changed with root age and among root categories. This variability was largely accounted for by differences in water content among different categories of turgid roots. The response of S _ABA to changes in root water potential ( Ψ _root) induced by dehydration was common to root tips, nodal roots and branches of several ages, while this was not the case if root dehydration was expressed in terms of RWC. Differences among root categories in the response of S _ABA to RWC were due to different RWC values among categories at a given Ψ _root, and not to differences in the response of S _ABA to Ψ _root.     

Photoperceptive Site of the Photoinduction of Root Hairs in Lettuce (Lactuca sativa L. cv. Grand Rapids) Seedlings Under Low pH Conditions

Lactuca sativa L. cv. Grand Rapids) seedlings under acidic conditions by a phytochrome-mediated response. Microbeam irradiation of 1 mm root segments with the first (100 Jm⁻²) and second (1,000 Jm⁻²) maxima of the fluence response curve for red light induction of root hair initiation indicated that the ca. 5 mm apical portion of 12 mm long roots was the site of photoperception. The root hair-forming portion of the root was situated at a distance of 1.7 mm from the root tip at the time of red light irradiation and extended (at most 1.5 mm) towards the basal end at a later stage of development, irrespective of which portion of the root was irradiated with red light. Received 13 August 1999/ Accepted in revised form 22 December 1999     

Gene profiling of the red light signalling pathways in roots

Red light, acting through the phytochromes, controls numerousaspects of plant development. Many of the signal transductionelements downstream of the phytochromes have been identifiedin the aerial portions of the plant; however, very few elementsin red-light signalling have been identified specifically forroots. Gene profiling studies using microarrays and quantitativeReal-Time PCR were performed to characterize gene expressionchanges in roots of Arabidopsis seedlings exposed to 1 h ofred light. Several factors acting downstream of phytochromesin red-light signalling in roots were identified. Some of thegenes found to be differentially expressed in this study havealready been characterized in the red-light-signalling pathwayfor whole plants. For example, PHYTOCHROME KINASE 1 (PKS1),LONG HYPOCOTYL 5 (HY5), EARLY FLOWERING 4 (ELF4), and GIGANTEA(GI) were all significantly up-regulated in roots of seedlingsexposed to 1 h of red light. The up-regulation of SUPPRESSOROF PHYTOCHROME A RESPONSES 1 (SPA1) and CONSTITUTIVE PHOTOMORPHOGENIC1-like (COP1-like) genes suggests that the PHYA-mediated pathwaywas attenuated by red light. In addition, genes involved inlateral root and root hair formation, root plastid development,phenylpropanoid metabolism, and hormone signalling were alsoregulated by exposure to red light. Interestingly, members ofthe RPT2/NPH3 (ROOT PHOTOTROPIC 2/NON PHOTOTROPIC HYPOCOTYL3) family, which have been shown to mediate blue-light-inducedphototropism, were also differentially regulated in roots inred light. Therefore, these results suggest that red and bluelight pathways interact in roots of seedlings and that manyelements involved in red-light-signalling found in the aerialportions of the plant are differentially expressed in rootswithin 1 h of red light exposure. Key words: Arabidopsis, gene profiling, microarray, photomorphogenesis, red light, roots     

In-situ localization of chalcone synthase mRNA in pea root nodule development

In this paper studies on the role of flavonoids in pea root nodule development are reported. Flavonoid synthesis was followed by localizing chalcone synthase (CHS) mRNA in infected pea roots and in root nodules. In a nodule primordium, CHS mRNA is present in all cells of the primordium. Therefore it is hypothesized that the Rhizobium Nod factor induces cell division in the root cortex by stimulating the production of flavonoids that function as auxin transport inhibitors. In nodules CHS mRNA is predominantly present in a region at the apex of the nodule consisting of meristematic and cortical cells. These cells are not infected by Rhizobium. Therefore it is postulated that CHS plays a role in nodule development rather than in a defence response. In roots CHS mRNA is located at a similar position as in nodules, suggesting that CHS has the same function in both root and nodule development. When nodules are formed by mutants of Rhizobium leguminosarum bv. viciae that are unable to secrete β(1-2) glucan and to synthesize the O-antigen containing LPS I, CHS genes are also expressed in regions of the nodule that are infected by Rhizobium. It is postulated that the impaired development of nodules formed by these mutants is due to an induction of a plant defence response.     

Extension rate and respiratory activity in the growth zone of wheat roots: Time-course for adjustments after defoliation

The time-course for adjustments in the rate of extension of wheat (Triticum aestivum L. cv. Alexandria) roots, and the activity and capacity of respiratory pathways in the root apex, were determined after pruning the shoot to the ligule of the first leaf. Leaf pruning reduced the extension rate of both seminal and lateral roots. The onset of the response occurred within 1 h of pruning for laterals and between 2 and 3 h for seminals. The reduction in rate appears to be the result of a decrease in carbohydrate availability because (1) in seminal roots it was preceded by a decrease in soluble sugar content of the apical part of the growth zone (0–5 mm behind the root apex) and (2) supplying glucose (50 mM) to the roots of plants defoliated 24 h earlier led to a steady increase in extension rate of both seminal and lateral roots compared to non-fed controls. Supplying 3-O-methyl glucose had no effect. The reduction in extension rate of seminal roots was accompanied (or slightly preceded) by a reduction in respiratory O₂ uptake in the apical part of the growth zone (0–5 mm). Changes in respiratory activity in the basal part of the growth zone (5–10 mm) only occurred several hours later. At the time root extension rate was reduced, the rate of O₂ uptake could be stimulated with FCCP, which indicates that respiration was under the fine control of adenylates. From these results we suggest the following sequence of events occurs after defoliation. Firstly, defoliation reduces the supply of sugars to the root apex, this leads to a reduction in rate of extension through some form of coarse control by carbohydrates on cell division and expansion, which in turn reduces the rate of respiratory O₂ uptake because of a smaller demand for ATP. The results also indicate that there is a rapid (<1.5 h) reduction in respiratory capacity in the root apex after defoliation which occurs before any change in the overall rate of respiration.     

The evening complex is central to the difference between the circadian clocks of Arabidopsis thaliana shoots and roots

The circadian clock regulates the timing of many aspects of plant physiology, and this requires entrainment of the clock to the prevailing day:night cycle. Different plant cells and tissues can oscillate with different free-running periods, so coordination of timing across the plant is crucial. Previous work showed that a major difference between the clock in mature shoots and roots involves light inputs. The objective of this work was to define, in Arabidopsis thaliana, the operation of the root clock in more detail, and in particular how it responds to light quality. Luciferase imaging was used to study the shoot and root clocks in several null mutants of clock components and in lines with aberrant expression of phytochromes. Mutations in each of the components of the evening complex (EARLY FLOWERING 3 and 4, and LUX ARRHYTHMO) were found to have specific effects on roots, by affecting either rhythmicity or period and its response to light quality. The data suggest that the evening complex is a key part of the light input mechanism that differs between shoots and roots and show that roots sense red light via phytochrome B.     

Phytochrome Controlled Adhesion of Mung Bean Root Tips to Glass: A Detailed characterization of the Phenomenon

Various parameters of the Tanada effect (Proc. Natl. Acad. Sci. U.S. 59: 376–380. 1968) have been defined. This phenomenon, in which root tips of Phaseolus aureus L. adhere to a negatively charged glass surface when they are irradiated with 660 nm (red) light and release under 730 nm (far-red) light, has been characterized as follows. Secondary roots, whether etiolated or light grown exhibit photoreversible adhesion. Primary roots do not. Tips from 6–8 mm secondary roots exhibit the best response to red light, whereas tips from 3 mm roots respond best to far-red light. Red light saturetes the adhesion system at about 50 μ W/cm²xnm and far-red light, release system at about 150 ü W/cm² xnm. The adhesion effect begins to show escape from far-red reversibility within 60–90 seconds, an observation quite different from other “typical” long term de- etiolation effects. In addition, root tips irradiated with red light begin to release spontaneously in the dark after 10 min, and have nearly completed release after 50 min. Tips irradiated with continuous red light show gradual release after 15 minutes of exposure. Whether these data indicate an extremely rapid dark reversion of P_fr to P_r or decay of P_fr under continuous red light is not known at this time. In order to study tip adhesion and release, the glass beaker surface may be negatively charged with thiocyanate (SCN^-), nitrate (NO₃^-), sulfate (SO₄^2-), chloride (Cl^-), phosphate (PO₄^3-), citrate (C₆H₅O₇^3-), oxalate (C₂O₄^2-) or glutamine (C₅H₈NO₄^-). Benzoate (C₇H₅O₂^-) and acetate (CH₃COO^-) were found to be relatively ineffective for red light adhesion, however when citrate and oxalate were used release was inhibited. This was apparently due to a chelation of Ca²⁺since release began immediately as excess Ca⁺² was added to the bathing solution. Substitution of GTP, ITP, UTP, or CTP for ATP resulted in only 20 to 40% adhesion and release for GTP, ITP and UTP, CTP showed normal adhesion kinetics under red light but very slow release kinetics under far-red light. The effects of red and far-red light in the numbers of secondary roots are that red light inhibits root initiation while far-red light partially reverses the red light effect.     

ANATOMY OF MACROZAMIA COMMUNIS LATERAL ROOTS AND ROOT NODULES FORMED IN VITRO STUDIED WITH LIGHT AND SCANNING ELECTRON MICROSCOPY

The anatomy of Macrozamia communis L. Johnson lateral roots and nodules was studied following axenic culture in light and darkness. Pointed lateral roots from dark cultures had an open apical organization similar to that of other cycads and gymnosperms. A distinct protoderm-derived epidermis was not observed. At the apex, the dermis was formed by the outer root capcortical cell layer. Subapically, the outer cortex formed the dermis. No evidence of an algal zone was observed in these roots. The stele was bounded by a distinct endodermis and contained an exarch, diarch xylem. Apogeotropic nodules which developed at the root-shoot junction in darkness, branched dichotomously and had rounded tips covered by tangentially-enlarged root cap cells. The root cap was reduced to a few cell layers and was confined to the extreme nodule apex. The central region of the apical meristem was enlarged, and meristematic cells contained differentiated amyloplasts. A presumptive algal zone was present in some but not all nodules and divided the cortex into inner and outer regions. Stelar anatomy was similar to that observed in pointed, dark-grown lateral roots, except that there was greater xylem differentiation. Nodules which developed in the light were similar to dark-formed nodules, except that root cap cells were radially enlarged and extended over the flanks of the nodule forming a persistent root cap. The heteromorphic lateral roots of M. communis formed a developmental continuum not a heterorhizic root system.     

Inhibition of flower induction on in vitro chicory root explants by hydroponic forcing pretreatment of roots

Fragments of vernalized chicory roots (Cichorium intybus L.) cultured in vitro under continuous light flower almost 100%. When chicory roots were placed in hydroponic forcing before in vitro culture, flowering percentage was reduced by half. The build-up of inhibition during 3 weeks of hydroponic forcing was studied in detail. The third week, in which growth of the chicory head is the strongest, was especially important in the inhibition process. When the root apex was eliminated during hydroponic forcing, flowering inhibition in vitro was weaker. The same observation was made when adventitious roots, developed during hydroponic forcing, were removed. The photoperiodic conditions during hydroponic forcing had no influence on the build-up of inhibition. It is suggested that activity of the apex and, possibly, of the adventitious roots during hydroponic forcing cause the flowering inhibition on chicory root fragments in vitro.     

Principal directions of growth and the generation of cell patterns in wild-type and gib-1 mutant roots of tomato (Lycopersicon esculentum Mill.) grown in vitro

The patterns of cell growth and division characteristic of the apex of tomato roots grown in vitro were simulated by computer using a growth tensor (GT). The GT was used to clarify the basis of the altered cell patterns found within apices of roots whose gibberellin levels had been depressed by mutation (at the GIB-1 locus) or through application of the gibberellin-biosynthesis inhibitor, 2S,3S paclobutrazol. At the pole of wild-type roots, where the cell files of the cortex converge, there are commonly only one or two tiers of cortical cells sandwiched between the pole of the stele and the cap initials. By contrast, root apices of the gib-1 mutant contain additional tiers in this region. The development of these additional tiers is suppressed when roots of the mutant are grown in the presence of gibberellic acid (GA₃), but could be induced in wild-type roots when they are grown in 2S,3S paclobutrazol. The wild-type cell pattern can be simulated using the GT and by the application of appropriate rules that govern cell growth and division. The induced variations in cell pattern are interpreted as being due to displacements, within the apex, of the principal directions of growth (PDGs), which are represented, in part, by the set of periclines and anticlines seen in the cell wall network; these, in turn, are utilized in the specification of the GT. During normal (wild-type) root growth, the PDGs maintain a stable pattern and the corresponding cell pattern is also stable. However, in order to interpret the cellular behaviour found in wild-type roots grown in 2S, 3S paclobutrazol, simulation using the GT shows that, if the pattern of PDGs is destabilized and displaced distally along the root axis, the cell pattern reorganizes into that typical of gib-1 mutant roots. Conversely, the cell pattern of gib-1 roots, which reverts to wild-type upon exposure to GA₃, can be simulated if the PDGs are displaced proximally to the inside of the apex whereupon the number of cortical tiers at the root pole decreases. These results suggest a link between endogenous gibberellin level and the specification of the PDGs in the growing tomato root apex. Furthermore, the evidence of cell patterns from gib-1 roots suggests that, in order to achieve stability of PDGs with concomitant stable cellular patterning, an optimal gibberellin level is necessary. In practice, this can be attained by culturing the mutant roots in medium containing 1 M GA₃.Abbreviations GA₃ gibberellic acid - GT growth tensor - NCS natural coordinate system - PDG principal direction of growth - QC quiescent centre - RERG relative elemental rate of growth We are grateful to the former Agricultural and Food Research Council for financial support under the International Scientific Interchange Scheme to enable J.N. to work at Long Ashton Research Station, and to K. Kurczyski (Silesian University, Katowice, Poland) for help in writing a computer program for cell proliferation. Preparation of the model for growth and division was supported in part by a grant from the Committee for Scientific Research, Poland.     

Local root apex hypoxia induces NO-mediated hypoxic acclimation of the entire root

Roots are very sensitive to hypoxia and adapt effectively to a reduced availability of oxygen in the soil. However, the site of the root where oxygen availability is sensed and how roots acclimate to hypoxia remain unclear. In this study, we found that the root apex transition zone plays central roles in both sensing and adapting to root hypoxia. The exposure of cells of the root apex to hypoxia is sufficient to achieve hypoxic acclimation of the entire root; particularly relevant in this respect is that, of the entire root apex, the transition zone cells show the highest demand for oxygen and also emit the largest amount of nitric oxide (NO). Local root apex-specific oxygen deprivation dramatically inhibits the oxygen influx peak in the transition zone and simultaneously stimulates a local increase in NO emission. The hypoxia-induced efflux of NO is strictly associated with the transition zone and is essential for hypoxic acclimation of the entire root.