蛋白质结构与功能中的结构域

结构域是蛋白质亚基结构中的紧密球状区域.结构域作为蛋白质结构中介于二级与三级结构之间的又一结构层次,在蛋白质中起着独立的结构单位、功能单位与折叠单位的作用.在复杂蛋白质中,结构域具有结构与功能组件与遗传单位的作用.结构域层次的研究将会促进蛋白质结构与功能关系、蛋白质折叠机制以及蛋白质设计的研究.     

Language Structure Is Partly Determined by Social Structure

Background

Languages differ greatly both in their syntactic and morphological systems and in the social environments in which they exist. We challenge the view that language grammars are unrelated to social environments in which they are learned and used.

Methodology/Principal Findings

We conducted a statistical analysis of >2,000 languages using a combination of demographic sources and the World Atlas of Language Structures— a database of structural language properties. We found strong relationships between linguistic factors related to morphological complexity, and demographic/socio-historical factors such as the number of language users, geographic spread, and degree of language contact. The analyses suggest that languages spoken by large groups have simpler inflectional morphology than languages spoken by smaller groups as measured on a variety of factors such as case systems and complexity of conjugations. Additionally, languages spoken by large groups are much more likely to use lexical strategies in place of inflectional morphology to encode evidentiality, negation, aspect, and possession. Our findings indicate that just as biological organisms are shaped by ecological niches, language structures appear to adapt to the environment (niche) in which they are being learned and used. As adults learn a language, features that are difficult for them to acquire, are less likely to be passed on to subsequent learners. Languages used for communication in large groups that include adult learners appear to have been subjected to such selection. Conversely, the morphological complexity common to languages used in small groups increases redundancy which may facilitate language learning by infants.

Conclusions/Significance

We hypothesize that language structures are subjected to different evolutionary pressures in different social environments. Just as biological organisms are shaped by ecological niches, language structures appear to adapt to the environment (niche) in which they are being learned and used. The proposed Linguistic Niche Hypothesis has implications for answering the broad question of why languages differ in the way they do and makes empirical predictions regarding language acquisition capacities of children versus adults.     

褐藻糖胶的结构及构效关系研究

综述了褐藻糖胶结构方面的研究进展,以及褐藻糖胶的抗凝血活性和抗病毒活性与结构之间的关系。     

Structure of ivory

Profiles with all orientations have been used to visualize the 3D structure of ivory from tusks of elephant, mammoth, walrus, hippopotamus, pig (bush, boar, and warthog), sperm whale, killer whale, and narwhal. Polished, forming, fractured, aged, and stained surfaces were prepared for microscopy using epi-illumination. Tusks have a minor peripheral component, the cementum, a soft derivative of the enamel layer, and a main core of dentine=ivory. The dentine is composed of a matrix of particles 5-20 microm in diameter in a ground substance containing dentinal tubules about 5 microm in diameter with a center to center spacing of 10-20 microm. Dentinal tubules may be straight (most) or curly (pigs). The main findings relate to the way that dentinal tubules align in sheets to form microlaminae in the length of the tusk. Microlaminae are sheets of laterally aligned dentinal tubules. They are axial but may be radial (most), angled to the forming face (pigs and hippopotamus canines), or radial but helical (narwhals). Within the microlaminae the dentinal tubules may be radial, angled to the axis (whales, walrus, and pigs), or may change their orientation from one microlamina to the next in helicoids (canines of hippopotamuses, incisors of proboscidea). In the nonbanded, featureless ivories from the hippopotamus incisors, the dentinal tubules form radial microlamina from which the arrangements in other ivories can be derived. In the canines of hippopotamuses and incisors of proboscidea, the dentinal tubule orientation changes incrementally from one microlamina to the next in a helicoid, a stack of dentinal tubules that change their orientation by 180 degrees anticlockwise. Dentinal tubules having different orientations are laid down concurrently, not layer by layer as in most examples of helicoidal architecture (e.g., insect cuticle). In proboscidean ivory, the microlaminae are radial, normal to the banding of growth layers marking the plane of deposition. They form radial segments with each 180 degrees turn in the orientation of their constituent dentinal tubules. Below the cementum they are almost complete 180 degrees helicoids, but nearer to the core they become narrower with the loss of radially oriented dentinal tubules. These truncated helicoidal patterns appear in longitudinal profile as VVVV feather patterns rather than intersection intersection intersection intersection, each V or intersection being the side view of a partial or complete helicoid. The Schreger pattern in proboscidean ivory consists of these helicoids divided tangentially into columns in the length of the tusk. Narwhals have the most abundant matrix particles with their radial/helical dentinal tubules having a twist opposite to that in the cementum.     

Structure of porosin

The reported structure of porosin, 3a-allyl-5-methoxy-3-methyl-2-veratryl-2,3,3a,6,7,7a-hexahydro-6-oxo-benzofuran, is revised with respect to Δ-4,5. ¹H NMR (LIS), UV and photochemical evidence shows that the double bond is located at the 7,7a-position.     

Spelling Protein Structure

Abstract

We would be tempted to state that there has never been a Levinthal paradox. Indeed, Levinthal raised an interesting problem about protein folding, as he realized that proteins have no time to explore exhaustively their conformational space on the way to their native structure. He did not seem to find this paradoxical and immediately proposed a straightforward solution, which has essentially never been refuted. In other words, Levinthal solved his own paradox.     

Structure of Xanthocidin

A burnt flavoring compound, which imparts to aged sake its characteristic and dominant flavor, was isolated by Diaion HP–20, silicic acid and Dowex 1–X8 (CH₃COO^?) column chromatography and chloroform extraction. Based on thin-layer and gas liquid chromatography, UV and GC–MS spectral data, it was identified as 3-hydroxy-4,5-dimethyl-2 (5H)-furanone and its structure was also confirmed by synthesis. It was suggested that this compound was formed by the condensation of a-ketobutyric acid with acetaldehyde which occurred from degradation of threonine.     

Structure of Chromatin

Physico-chemical experiments show that histones are not evenly distributed in chromatin. About half of the DNA is “open” and not covered with proteins.     

Structure of galtamycin

Structure of galtamycin, a novel anthracycline antibiotic was assessed with 1H NMR, 13C NMR and mass spectroscopy. Galtamycin includes an unusual aglycone i.e. galtamycinone containing the C-glycoside bond and glycosylated with trisaccharide consisting of two fragments of L-rodinose and one fragment of D-olivose.     

Structure of brevobiose

A new disaccharide, brevobiose (1), has been isolated from the dried twigs of Sarcostemma brevistigma. The structure of 1 has been established as 4-O-(6-deoxy-2-O-methyl-β-d-allopyranosyl)-d-boivinose on the basis of chemical and spectroscopic evidence, and identification of its hydrolysis products.     

Structure of Thermolysin

Results of the chemical and X-ray analyses are combined to locate the active site and the calcium binding sites.     

Structure of caveolae

The introduction of the electron microscope to the study of the biological materials in the second half of the last century has dramatically expanded our view and understanding of the inner workings of cells by enabling the discovery and study of subcellular organelles. A population of flask-shaped or spherical invaginations of the plasma membrane were described and named plasmalemmal vesicles or caveolae. Until the discovery of caveolin-1 as their first molecular marker in early 1990s, the study of caveolae was the exclusive domain of electron microscopists that demonstrated caveolae at different surface densities in most mammalian cells with few exceptions. Electron microscopy techniques in combination with other approaches have also revealed the structural features of caveolae as well as some of their protein and lipid residents. This review summarizes the data on the structure and components of caveolae and their stomatal diaphragms.