Banded karyotypes of mole rats (Spalax, Spalacidae, Rodentia) from Turkey: a comparative analysis

Chromosome banding (G-, C- and Ag-NOR) analysis was carried out on 27 specimens of Sphalax ehrenbergi from seven localities and two specimens of S. leucodon from one locality, all from Turkey. No chromosomal variation was detected in S. ehrenbergi populations from Elazig, Siverek, Diyarbakir and Birecik having the same diploid numbers (2n = 52) and morphology of chromosomes (NFa = 72). The karyotypes of mole rats from Tarsus and Gaziantep possessed the identical diploid number (2n = 56) but different numbers of autosomal arms: NFa = 68 in the Tarsus and NFa = 78 in the Gaziantep populations. Chromosomes of S. leucodon from Malaty (2n = 60, NFa = 74) differed distinctly in the C-banding pattern from all S. ehrenbergi cytotypes by the almost entire absence of heterochromatin in acrocentric autosomes and the presence of heterochromatin arms iin subtelocentric autosomes. Nucleolar organizing regions were found mainly on three pairs of chromosomes, but some differences in their localization were revealed. Comparison of G-banded chromosomes showed, that most chromosomes have a similar pattern. The types of chromosomal rearrangemetns were revealed due to the banding methods.     

New Ctenomys karyotypes (Rodentia,Octodontidae) from north-eastern Argentina and from Paraguay confirm the extreme chromosomal multiformity of the genus

Bone-marrow karyotypes of 68 specimens of the subterranean octodontid rodent genus Ctenomys from 16 different populations of north east Argentina and one from Paraguay have been studied. A surprising variety of chromosome numbers was found, ranging from 2n=42 to 2n=70. Some of the karyomorphs are clearly assigned to named species by topotypy: C. conoveris 2n=50, FN=56; C. argentinus, 2n=44, FN=54; C. perrensi, 2n=50, FN=84; C. dorbignyi, 2n=70, FN=84; C. roigi, 2n=48, FN=80; C. yolandae, 2n=50, FN=78. Four populations of Corrientes Province similar in morphology to C. perrensi were found to be polymorphic and polytypic; they maintain the same FN=84, but diploid numbers increase from 2n=54 to 2n=58 from SW to the NE, thus suggesting Robertsonian rearrangements. In the middle of this cline, a stable karyomorph of 2n=62, FN=84 was found in two different populations, suggesting to belong to an undescribed species. Another karyomorph of 2n=42, FN=76 found in Curuzú Laurel, Corrientes, may also prove to represent another undescribed species. One karyomorph of 2n=52, FN=74, and another of 2n=56, FN=78 from Paraná and Ubajaý (Entre Ríos Province, Argentina) respectively are close to C. rionegrensis. The relationships among these karyomorphs is considered in light of data on sperm morphology. The hypothesis is advanced that karyotypic rearrangements among the FN=84 group may be the result of Robertsonian repatterning from a 2n=70 original widespread form. Fixation of chromosomal variants is correlated with patchy distribution and small size of unstable demes, and may or may not have resulted in reproductive isolation.     

Cytotaxonomic study of genusHymenasplenium (Aspleniaceae) in Xishuangbanna, Southwestern China

The gametic chromosome numbers of sevenHymenasplenium (Aspleniaceae) species from Xishuangbanna, Yunnan Prov., China, were investigated. All the examined individuals ofH. obscurum, H. cheilosorum andH. latipinnum were sexual diploids with n=39 chromosomes. Intraspecific cytological variation was found inH. excisum, which has a sexual diploid (n=39) and a tetraploid (n=78). Only a triploid apogamous cytotype (n=ca.117) was found inH. laterepens. Hymenasplenium apogamum showed the most complicated intraspecific variation and included a sexual diploid (n=39), a sexual tetraploid (n=78) and an apogamous triploid (n=ca.117). This work reports for the first time the sexual diploids ofH. cheilosorum andH. apogamum, which are only apogamous elsewhere in east Asia, Himalayas and Indochina. These results may indicate that this area is one of the diversity centers ofHymenasplenium. Most of the above species have chromosome numbers based on x=39. In contrast,H. costarisorum contains a sexual diploid (n=36) and a sexual tetraploid (n=72), indicating that its basic number is x=36.     

The Genetic Structure of Natural Populations of Drosophila Melanogaster. Xxii. Comparative Study of DNA Polymorphisms in Northern and Southern Natural Populations

Restriction map variation in four gene regions (Adh, Amy, Pu and Gpdh) was surveyed for 86 second chromosomes from northern (Aomori) and southern (Ogasawara) Japanese populations of Drosophila melanogaster (43 chromosomes from each population). The regions examined cover a total of 62 kilobases. Estimates of nucleotide diversity (pi) were approximately constant across the gene regions and populations examined. The distribution of restriction site polymorphisms was compatible with the expectation from the neutral mutation-random genetic drift hypothesis, but insertion/deletion polymorphisms were not consistent with it. While the two populations shared a majority of restriction site polymorphisms, frequencies of individual restriction site variants were significantly different between the two populations at 7 out of 35 segregating sites. In addition, an insertion in the Amy region was found in 15 chromosomes from the Ogasawara sample but absent in the Aomori sample. A considerable difference was observed in the number of rare insertions and deletions between the two populations. The numbers of aberrations uniquely represented were 16 in the Ogasawara sample and only 3 in the Aomori sample. These findings suggest that the two populations were differentiated from each other to some degree by means of random genetic drift and/or other factors.     

A karyological study on subterranean mole rats of the Spalax leucodon Nordmann, 1840 superspecies in Turkey

The karyotypes of 179 specimens of the subterranean mole rats of the Spalax leucodon Nordmann, 1840 superspecies across 40 localities in Turkey were analysed. It was determined that S. leucodon has 2n = 56, NF = 76 in the European part of Turkey (Eceabat population) but 2n = 38, NF = 74; 2n = 50, NF = 70; 2n = 52, NF = 70; 2n = 54, NF = 72; 2n = 56, NF = 74; 2n = 58, NF = 78; 2n = 60, NF = 78; 2n = 60, NF = 80 in populations analysed from the Asian part of Turkey. According to these karyological findings the diploid chromosome numbers of 2n = 50, 2n = 52, 2n = 56 and 2n = 58 determined from the Asian part of Turkey are new fo Spalax leucodon in Turkey. Because diploid numbers of these populations were formerly found from geographically distant localities in Turkey, they were designated as 2n = 50 N, 52 N, 56 N and 58 N, to differentiate from the other forms having the same diploid chromosome numbers but different chromosome morphology.

The occurrence of so many chromosomal forms in such small areas suggested that many other new forms may be found by new studies in Turkey. The presence of 2n = 50, 56 and 58 populations in very small areas is strongly supportive of the opinion of a peripatric chromosomal evolution in Spalax.     

Glacial survival does not matter: RAPD phylogeography of Nordic Saxifraga oppositifolia

The arctic-alpine Saxifraga oppositifolia has recently been suggested to have survived the last glaciation in high-arctic refugia, based on a finding of more genetic (RFLP) variation in Svalbard compared with more southern areas. To elucidate the migration history of this allogamous species, we analysed 18 populations from Norway, Svalbard and Novaya Zemlya using random amplified polymorphic DNAs (RAPDs). There was no more RAPD variation in the high Arctic than further south. In an analysis of molecular variance (AMOV A), most of the RAPD variation was found within populations (64%). There was less intrapopulational variation in Svalbard (65%) than in northern Norway (78%) and southern Norway (86%), suggesting that there is more inbreeding towards the north, probably because of lower pollinator activity. Twenty-eight per cent of the RAPD variation was found among populations within these geographical regions, and only 9% was found among the regions. In PCO and UPGMA analyses, plants and populations of different geographical origins were to a large extent intermingled. There was, however, a distinct, south-north clinal geographical structuring of the RAPD variation both in the PCO analysis and in a spatial autocorrelation (Mantel) analysis. These results suggest that there has been extensive gene flow among more or less continuously distributed populations of S. oppositifolia during the Weichselian, and that the extant Nordic populations were established after massive, centripetal immigration from these genetically variable, periglacial populations. The postglacial period may not have been sufficiently long for the subsequently isolated populations of this long-lived, allogamous perennial to diverge. Given the high levels of migration inferred from this study, genetic differentiation of glacial survivor populations, if any existed, would most likely have been swamped in the postglacial period. Thus, our molecular data support recent conclusions based on palaeobotanical and biogeographical data that the glacial survival hypothesis is superfluous.     

Geographic patterns of chromosomal variation in South American marsh rats, Holochilus brasiliensis and H. vulpinus.

Karyotypes were prepared from 146 individuals, representing nine populations evenly spaced along a 2,000-km north-south transect in Paraguay and Argentina, to determine the nature, extent, and pattern of chromosomal variation in Holochilus brasiliensis chacarius and H. vulpinus. Two distinct patterns of chromosomal variation characterized these two species. In H. brasiliensis, the diploid number (2n) ranged from 48 to 56 and the nombre fondamental (NF) from 57 to 63. Four classes of chromosomal variation were found in populations of H. brasiliensis: whole-arm Robertsonian (Rb) translocations, including Rb changes with monobrachial homology, variation in the number and kind of supernumerary (B) chromosomes, centromeric rearrangements (putative pericentric inversions), and variation in the amount of euchromatin. The amount of structural variation was uniformly high in all populations of H. brasiliensis sampled, and all rearrangements appeared to be in Hardy-Weinberg proportions, corroborating the hypothesis that chromosomal rearrangements are not strongly underdominant in this species. In H. vulpinus, 2n ranged from 35 to 39 and NF from 57 to 61. Two classes of variation were found in this species: variation in the number, but not the kind, of supernumerary chromosomes and variation in the amount of euchromatin.     

GEOGRAPHICAL DISTRIBUTION OF B CHROMOSOMES OF XANTHISMA TEXANUM (COMPOSITAE: ASTEREAE). II. LOCAL VARIATION WITHIN AND BETWEEN POPULATIONS AND FREQUENCY VARIATION THROUGH TIME

Variation in the frequency of individuals of Xanthisma texanum with B chromosomes among populations at the local level and variation in the frequency and distribution through time of individuals with B chromosomes within populations was investigated in a small area of southwestern Oklahoma and adjacent Texas between 1974 and 1987. The chromosome numbers of 1,224 individuals were determined from meiotic material; 15.8% of these had B chromosomes, less than 1% had three or four B chromosomes; none had more than four B chromosomes. The frequency of plants with B chromosomes among all sites sampled ranged from 0 to 33% and from 0 to 25% in sites separated by only a hundred meters; large differences in sample size occurred. Even at the subsite level large differences in frequencies in plants with B chromosomes were found. Within single sites, B chromosome frequency was not constant through time: the pattern of change differed among subsites within populations. In some cases the frequency went to zero. No correlations between environmental parameters and B chromosome frequency were documented.     

Biosystematic study ofSedum L. SubgenusAizoon (Crassulaceae)

Variation in chromosome number and morphological characters ofSedum aizoon L. var.floribundum Nakai were investigated to analyze, correlations between them. Geographical variation in chromosome number was also examined. Chromosome numbers of 189 individuals from 55 localities were counted as 2n=32, 33, 34, 48, 61, 64, 78, 80, 84, 85, 88, 93, 94, 95, 96, 97 and 102. InSedum subgenusAizoon, which has the basic number of X=8, var.floribundum of the speciesaizoon showed a polyploid series from tetraploid to dodecaploid. Tetraploids were found most frequently in this variety. More than two chromosome numbers were found in all the populations with 2n=61 or more. Tetraploids were mainly distributed in the eastern part of Japan, and higher polyploids (higher than hexaploid level except octaploids) were distributed in the western part of Japan. Thirteen morphological characters were examined in 119 individuals belonging to 30 populations. The principal component analysis and the cluster analysis of these characters indicated that populations with similar chromosome numbers were not always morphologically similar. Ten morphotypes can be recognized based on the combination of chromosome number and morphological characters. ThusS. aizoon var.floribundum can be regarded as a polyploid-aneuploid complex.     

Supernumerary chromosomes,Robertsonian rearrangement and variability of the sex chromosomes inNectomys squamipes (Cricetidae,Rodentia)

Chromosomes were analyzed in 91 specimens ofNectomys squamipes, collected in three distinct geographic regions of Brazil. Chromosomal polymorphism due to supernumerary chromosomes, Robertsonian rearrangement and variation of sex chromosomes is reported. Samples collected in the northeastern region had 2n=52, FN=52; 2n=53, FN=54; 2n=54, FN=56; 2n=55, FN=56; 2n=56, FN=56; 2n=57, FN=57. The specimens from the southeastern and southern regions showed 2n=55, FN=56; 2n=56, FN=56; 2n=57, FN=58; 2n=58, FN=60; 2n=59, FN=62. Seven different types of supernumeraries were observed. These vary in size, morphology and C-banding characteristics.The Brazilian populations ofNectomys squamipes are composed of at least two basic entities, one with 2n=52 and its increasing series up to 2n=55, the other with 2n=56, increasing to 2n=59. Both entities are characterized by variation from 0 to 3 supernumeraries. The X and Y chromosomes present polymorphisms in terms of the size, shape as well as the distribution of constitutive heterochromatin.This research was supported by CNPq-PIG (Projeto Integrado de Genética) and is part of the Rodent Cytogenetic Colaborative Study, developed by different Laboratories in Brazil.     

Chromosome polymorphism of thePoa macrocalyx complex in Hokkaido

A chromosome survey ofPoa macrocalyx growing on the coast of Hokkaido was carried out. Counts were made for 619 samples collected from 37 populations. A large variation in the chromosome numbers (2n=42-2n=87) was disclosed, and on the basis of this and some other observations, this species was presumed to represent an apomictic polyploid complex. Three main cytotypes with 2n=42, 2n=49 and 2n=68 were discovered. They differed in their geographical distribution. Plants with 2n=70 and 2n=77 appeared to a considerable extent, but it could not be ascertained whether they were good “races”. Other plants with diverse chromosome numbers, and in some cases only ephemeral, were also sporadically detected. Infrapopulational variation was scarce in some populations while fairly common in some others. Uneven segregation of chromosomes at meiosis and the fusion of reduced and unreduced gametes seemed to be the main factors contributing to chromosome fluctuations within a population.     

Variations of 18S rDNA Loci Among Six Populations of Paeonia obovata Maxim. （Paeoniaceae） Revealed by Fluorescence In Situ Hybridization

The localization of 18S ribosomal RNA genes （rDNA） by fluorescence in situ hybridization （FISH） had been performed for some species of Paeonla. However, the pattern of 18S rDNA loci among populations Is Indistinct. In the present study, we localized 18S rDNA loci on meiotic or mitotic chromosomes of six populations of Paeonla obovata Maxim. （Paeonlaceae）. Different numbers of rDNA loci were found with different diploid （2n=10） populations, namely eight （Lushl and Mt. JIuhua populations）, 10 （Mt. Talbal population）, and seven （Mt. Guandl population）, whereas tetraplold （2n=20） populations were all found with 16 loci. Aii rDNA loci were mapped near teiomeres of mitotic chromosomes and there was no chromosome with two loci. The present results show that molecular cytological polymorphlsm exists among P. obovata diploid populations, Indicating that structural variations occurred frequently during the evolutionary history of this species, accompanied with differentiation among populations.     

Polymorphism and mosaicism of B chromosome number in Korean field mouse <Emphasis Type="Italic">Apodemus peninsulae</Emphasis> (Rodentia) in the Russian Far East

A karyotype analysis of the Apodemus peninsulae (n = 355) from 41 trapping points from the Russian Far East has allowed us to identify B chromosomes in 87.9% of the animals, 61.7% of which are mosaics. Different levels of variability in the B chromosome numbers have been studied, including both the inter- and intrapopulational, as well as intraindividual variability (mosaicism). It was found that the frequencies of the occurrence of individuals with B chromosomes and mosaicism between different population samples were not constant. The range of the modal B chromosome number variability and variation of the xB index (zero to four; on average, the xB amounted to 1.67) were studied for the first time in different samples and populations of this species. Individuals with the predominant numbers of B chromosome (as a rule, zero to two) were revealed in both groups of animals (with stable and mosaic karyotypes), but the frequency was different in geographical regions. The spectra of B chromosome variability were wider in mosaics (zero to seven) compared to animals with stable karyotypes (zero to four). The importance of this for species of the high frequency of individuals with B chromosomes and with mosaicism has been discussed. The adaptive role of the low number of B chromosomes (one to two), as well as the imbalance of the B chromosome system for the species as a whole is assumed.     

Diversified chromosomal characteristics in Centropyge fishes (Pomacanthidae, Perciformes)

We studied karyotypes and other chromosomal markers such as C-banded heterochromatin and Ag-stained nucleolus organizer regions (Ag-NORs), in seven Centropyge fishes (Pomacanthidae, Perciformes). These results revealed diversified chromosomal characteristics in Centropyge species. Three species had 2n = 48 chromosomes, whereas four species had 2n = 52 chromosomes. Fundamental numbers showed a large variation from 48 to 82, particularly in the species with 2n = 52 chromosomes. In all the species, Ag-NORs were located in a single chromosome pair and C-bands were mainly distributed in the centromeric regions of most chromosomes, as commonly seen in teleostean fishes. However, these chromosomal markers showed species-specific variations and provided us with useful information that could help us in understanding chromosomal evolution. On the basis of these chromosomal characteristics, we infer the process of chromosomal evolution, which according to us involves an increase in chromosome number from 2n = 48 to 2n = 52 through centric fission or other mechanisms, and in fundamental number through pericentric inversion. In particular, karyotypic evolution involving the increase in chromosome number is an unusual event in the evolution of higher teleostean groups. Handling editor: K. Martens     

Chromosome differences in Peromyscus maniculatus populations at different altitudes in Colorado

Mice of the genus Peromyscus all have 48 chromosomes. Yet the appearance of the 48 chromosomes is highly variable from species to species (Hsu & Arrighi, 1966, 1968, 1971; Pathak et al., 1973) and even in different populations of the same species (Sparkes & Arakaki, 1966; Ohno et al., 1966; Hsu & Arrighi, 1968; Arakaki et al. 1970; Te & Dawson, 1971; Bradshaw & Hsu, 1972; Murray & Kitchin, 1976). The evolutionary significance of this variation and the mechanisms for its initiation and maintenance have been of interest for quite a few years. However, it was not until the sophisticated chromosome banding techniques became available that mammalian cytogeneticists were able to begin to study the chromosome variation of Peromyscus in some detail. The use of C-banding led Hsu & Arrighi (1971) to the finding that the short arms of chromosomes in three different species of Peromyscus contained constitutive heterochromatin. These results suggested that the variations in the number of acrocentric chromosomes in Peromyscus might be a result of different amounts of heterochromatin. Later studies (Duffey, 1972; Waterbury, 1972; and Pathak et al., 1973) were also consistent with this hypothesis.However, it was soon discovered that not all chromosomal differences among Peromyscus populations are due to heterochromatin changes. Studies by Arighi et al. (1976) and Murray & Kitchin (1976) showed that some chromosomal differences between species and subspecies of Peromyscus are due to pericentric inversions. Thus, it appears that both inversions and the addition of heterochromatin are involved in the evolution of the karyotype of Peromyscus.The purpose of our study was to investigate the chromosomes of Peromyscus maniculatus in different populations in Colorado (U.S.A.) and to test for relationships involving an altitudinal gradient. In the first part of this study, orcein stained chromosomes from three subspecies of mice sampled at nine different altitudes were examined for karyotype variability. In the second part of the study, karyotypes of two subspecies (P. m. rufinus and P. m. luteus), representing high and low altitude populations were examined with Q banding to determine the mechanisms responsible for chromosomal differences.     

Supernumerary chromosomes, mosaicism, and dynamics in two populations of Eastern-Asian wood mouse (Apodemus peninsulae, Rodentia) from Primorski? Krai at various seasons of the year]

Karyotypes of 47 individuals of the wood mice Apodemus peninsulae from two reserves in Primorskii krai (Kedrovaya Pad' and Ussuriiskii) were studied during spring, summer, and autumn. In each population, variation in the number of B-chromosomes (2n = 48 + 0-5B) as well as the intratissue mosaicism determined by variation of the number, size and morphology of supernumerary chromosomes were described. Animals that have one dotlike B-chromosome were first described in both populations as rare variants. Individuals that have bone-marrow cell clones with two or three B-chromosomes were found to be predominant in the populations of Primorskii krai. The number of clones varied from one to three per animal. The frequency of mosaics showed seasonal variation. In the population of the Ussuriiskii reserve, a sharp increase in the frequency of animals with a stable karyotype was detected in autumn, at the phase of increased numbers. The variation for mosaicism was suggested to correlate with the population numbers in mice and to indicate the genetic differences between generations of the population.     

Chromosomes tell half of the story: the correlation between karyotype rearrangements and genetic diversity in sedges,a group with holocentric chromosomes

Chromosome rearrangements may affect the rate and patterns of gene flow within species, through reduced fitness of structural heterozygotes or by reducing recombination rates in rearranged areas of the genome. While the effects of chromosome rearrangements on gene flow have been studied in a wide range of organisms with monocentric chromosomes, the effects of rearrangements in holocentric chromosomes—chromosomes in which centromeric activity is distributed along the length of the chromosome—have not. We collected chromosome number and molecular genetic data in Carex scoparia, an eastern North American plant species with holocentric chromosomes and highly variable karyotype (2n = 56–70). There are no deep genetic breaks within C. scoparia that would suggest cryptic species differentiation. However, genetic distance between individuals is positively correlated with chromosome number difference and geographic distance. A positive correlation is also found between chromosome number and genetic distance in the western North American C. pachystachya (2n = 74–81). These findings suggest that geographic distance and the number of karyotype rearrangements separating populations affect the rate of gene flow between those populations. This is the first study to quantify the effects of holocentric chromosome rearrangements on the partitioning of intraspecific genetic variance.     

Basic chromosome numbers of terrestrial orchids

The chromosome numbers of forty-one Brazilian species belonging to 11 genera of preferentially terrestrial orchids (subfamilies Cypripedioideae, Spiranthoideae, Orchidoideae, and Vanilloideae) were examined. Previous records for these subfamilies were reviewed in order to identify the ancestral chromosome numbers of terrestrial orchids. The variation observed within the subfamilies Spiranthoideae (2n=28, 36, 46, 48 and 92), and Orchidoideae (2n=42, 44, ca. 48, ca. 80, 84, and ca. 168) was similar to that previously reported in the literature. In the subfamily Spiranthoideae, some species of Prescottia (subtribe Prescottiinae) and some genera of Spiranthinae showed a bimodal karyotype with one distinctively large pair of chromosomes. The analysis of chromosome numbers of the genera in subfamilies revealed the predominance of the polyploid series 7, 14, 21, 28, 42 with a dysploid variation of ±1 in each ploidy level. These results suggest that the basic chromosome number of terrestrial orchids is x₁=7 for the subfamilies Spiranthoideae and Orchidoideae, as well as other Epidendroid orchids, and that the majority of the genera are composed of palaeopolyploids.     

Influence of northern limit range on genetic diversity and structure in a widespread North American tree,sugar maple (Acer saccharum Marshall)

Due to climate change, the ranges of many North American tree species are expected to shift northward. Sugar maple (Acer saccharum Marshall) reaches its northern continuous distributional limit in northeastern North America at the transition between boreal mixed‐wood and temperate deciduous forests. We hypothesized that marginal fragmented northern populations from the boreal mixed wood would have a distinct pattern of genetic structure and diversity. We analyzed variation at 18 microsatellite loci from 23 populations distributed along three latitudinal transects (west, central, and east) that encompass the continuous–discontinuous species range. Each transect was divided into two zones, continuous (temperate deciduous) and discontinuous (boreal mixed wood), based on sugar maple stand abundance. Respective positive and negative relationships were found between the distance of each population to the northern limit (D_north), and allelic richness (A_R) and population differentiation (F_ST). These relations were tested for each transect separately; the pattern (discontinuous–continuous) remained significant only for the western transect. structure analysis revealed the presence of four clusters. The most northern populations of each transect were assigned to a distinct group. Asymmetrical gene flow occurred from the southern into the four northernmost populations. Southern populations in Québec may have originated from two different postglacial migration routes. No evidence was found to validate the hypothesis that northern populations were remnants of a larger population that had migrated further north of the species range after the retreat of the ice sheet. The northernmost sugar maple populations possibly originated from long‐distance dispersal.