Hyphal growth and mycorrhiza formation by the arbuscular mycorrhizal fungus Glomus claroideum BEG 23 is stimulated by humic substances

Effects of humic substances (humic acid or fulvic soil extract) or saprophytic microorganisms (Paecilomyces lilacinus and an unidentified actinomycete) on growth of mycelium and mycorrhiza formation by Glomus claroideum BEG23 were studied in a hydroponic system. Humic substances stimulated root colonization and production of extraradical mycelium by the mycorrhizal fungus. Both humic and fulvic acids tended to decrease populations of culturable bacteria and fungi in the cultivation system, indicating a moderately antibiotic activity. The addition of saprophytic microorganisms able to use humic substances to the cultivation system further stimulated the development of the mycorrhizal fungus. However, stimulation of G. claroideum was also observed when the saprophytic microorganisms were heat-killed, suggesting that their effect was not linked to a specific action on humic substances. The results indicate that humic substances may represent a stimulatory component of the soil environment with respect to arbuscular mycorrhizal fungi.     

Characterization of humic materials extracted from hazelnut husk and hazelnut husk amended soils

This study was carried out to determine effects of composted hazelnut husk (CHH) on some chemical properties of soil and soil humic acid (HA). Compost application increases organic matter (OM) content of the soil considerably, OM value of 3.18% became 3.89% in 3 years time interval. Before application of compost, the soil pH was found to be 5.37, while after compost application it became 5.61. FTIR characteristics of humic acid/humic acid-like materials extracted from the original hazelnut husk, composted hazelnut husk and composted hazelnut husk amended soil have been investigated. C and O content of humic acid-like/humic acid materials were in the range of 41.4–50.8% and 37.8–50.5%, respectively. The N content of the humic acid/humic acid-like materials are in the expected range for humic materials which is 2–6%. Comparison of FTIR spectra of hazelnut husk and composted hazelnut husk humic acid-like fractions shows that both exhibit similar but not identical series of IR bands indicating the presence of the same functional groups in both samples. The only difference in the spectra seemed to be a decrement in the peak intensities of composted sample compared to uncomposted one. The similar differentiation of the intensities of IR bands of compost applied soil sample has also been observed. The FTIR spectral results show that the characteristics of composted material tend to become similar to that of soil humic acids characteristics in time.     

Biochemical origin and refractory properties of humic acid extracted from maize plants: the contribution of lignin

The soil organic carbon (SOC) pool is the largest terrestrial reservoir of carbon and plant residues play an important role in its maintenance. Up to 70–80% of SOC in arable soil is composed of humic substances (HS). In these soils post-harvested residues, left in arable soil after harvesting the crops, are the basic source of humus. Previous research indicated that maize plants residue contain a humic acid (HA) fraction possessing recalcitrant compounds that contributed to soil-HA fraction. This study presents updated results obtained using Pyrolysis-Gas Chromatography/Mass Spectrometry (Py-GC/MS) to provide an indication of the contribution of the lignin to the soil HA. Results obtained indicated that the HAs from maize plants were mainly composed of lignin-derived moieties that were likely derived from the partial hydrolysis of p-coumaric and ferulic acid that are linked to lignin, polysaccharides or other biopolymers of the cell wall. Lignin composing the HAs derived from plants and incubated in soil was substantially preserved. Nevertheless the modification of the syringyl/guaiacyl ratio and the oxidation of the side-chains of lignin, suggested a turnover of lignin-derived molecules in soil-HA fraction. This fact indicated an involvement of the alkali insoluble fraction of maize plant residue (humin) in the soil-HA formation, up-dating our previous knowledge.     

Degradation of humic acid of a forest soil by some fungal isolates

Summary In a laboratory incubation study the humic acid isolated from a forest soil of Palamau (Bihar) was subjected to biodegradation for a period of six weeks by using nine cultures of fungi. These fungi were tested earlier for their cellulose decomposing ability. The humic acid was used as sole source of carbon, nitrogen and carbon plus nitrogen in Czapek-Dox broth. Of the nine culturesAspergillus awamori (IARI),Penicillium sp. (Ranchi),Humicola insolense (Hissar) were found to be very effective in decomposing humic acid. The humic acid used as sole source of carbon was most efficiently degraded followed by that used as carbon+nitrogen source. When it was used as sole source of nitrogen, it could not be degraded so efficiently. This may be due to unavailability of its nitrogen to these microorganisms.     

Water repellency of Casuarina windbreaks (Casuarina equisetifolia Forst.) caused by fungi in central Taiwan

The water repellent layer (WRL) in the Casuarina plantation near Taichung Harbor in central Taiwan is mainly due to the development of filamentous fungi. The hyphae of the isolated fungi and the metabolites of the TCHC-5 and TCHC-20 fungi are also significantly hydrophobic. In the soil layers, humic substances decrease the phosphorus fixation and contribute to the formation of WRL. The hydrophobic properties of humic substances are unfavorable for the nutrient cycling in this area. The water contact angles of fulvic acids and humic acids are pH-dependent. Increasing the solution pH value reduces the hydrophobic strength for fulvic acids and/or humic acids. TCHC-15 and TCHC-16 isolated fungi exude strong acidic metabolites (pH 2.7–3.0). This may result in polymerization and/or precipitation of fulvic acids and humic acids and increase the hydrophobic strength of the soil layers. Humic substances with aliphatic chains are the main components that form WRL in soils. Soil pH may be an indicator of the hydrophobic potential for organic matters.     

川西亚高山森林凋落物去除对土壤腐殖质动态的影响

森林凋落物作为森林土壤腐殖质的主要来源, 在土壤腐殖质的形成中发挥着重要作用, 但不同森林类型凋落物因其含量、组成等的不同, 对土壤腐殖质的影响也不同。该研究以川西亚高山针叶林、阔叶林和针阔混交林3种不同森林类型为对象, 采用凋落物原位控制实验, 对比研究不同关键期凋落物去除对土壤可提取腐殖质、胡敏酸和富里酸含量及胡敏酸/富里酸、胡敏酸/可提取腐殖质的影响。主要结果: (1)土壤可提取腐殖质、胡敏酸和富里酸含量在不同森林类型中差异显著。土壤可提取腐殖质含量总体表现为针叶林>针阔混交林>阔叶林, 胡敏酸含量总体表现为针阔混交林>针叶林>阔叶林, 而富里酸含量则表现为针叶林>阔叶林>针阔混交林, 其中3种林型中土壤腐殖质的主要成分为富里酸, 总体均表现为富里酸型。不同采样时期也显著影响了土壤可提取腐殖质、胡敏酸和富里酸含量, 总体均表现为先升高后下降的趋势。除个别采样时期外, 凋落物去除总体降低了土壤可提取腐殖质、胡敏酸和富里酸的含量。(2)胡敏酸/富里酸和胡敏酸/可提取腐殖质的结果显示3种林型土壤总体腐殖化程度均较低, 整体表现为针阔混交林>阔叶林>针叶林, 凋落物去除在一定程度上有利于提高阔叶林与针阔混交林的腐殖质品质。(3)相关分析表明不同凋落物处理间土壤可提取腐殖质与土壤有机碳含量、全氮含量和土壤含水量呈显著正相关关系, 与温度呈显著负相关关系。综上所述, 短期的凋落物去除会降低土壤腐殖物质的含量, 但不同林型间由于凋落物类型差异会导致土壤腐殖质的不同变化, 说明土壤腐殖质的动态变化受凋落物类型以及环境因素的综合调控。因此, 关于凋落物变化对土壤腐殖质的影响还需进一步的长期研究。     

Altered microbial community structure and organic matter composition under elevated CO2 and N fertilization in the duke forest

The dynamics and fate of terrestrial organic matter (OM) under elevated atmospheric CO₂ and nitrogen (N) fertilization are important aspects of long‐term carbon sequestration. Despite numerous studies, questions still remain as to whether the chemical composition of OM may alter with these environmental changes. In this study, we employed molecular‐level methods to investigate the composition and degradation of various OM components in the forest floor (O horizon) and mineral soil (0–15 cm) from the Duke forest free air CO₂ enrichment (FACE) experiment. We measured microbial responses to elevated CO₂ and N fertilization in the mineral soil using phospholipid fatty acid (PLFA) profiles. Increased fresh carbon inputs into the forest floor under elevated CO₂ were observed at the molecular‐level by two degradation parameters of plant‐derived steroids and cutin‐derived compounds. The ratios of fungal to bacterial PLFAs and Gram‐negative to Gram‐positive bacterial PLFAs decreased in the mineral soil with N fertilization, indicating an altered soil microbial community composition. Moreover, the acid to aldehyde ratios of lignin‐derived phenols increased with N fertilization, suggesting enhanced lignin degradation in the mineral soil. ¹H nuclear magnetic resonance (NMR) spectra of soil humic substances revealed an enrichment of leaf‐derived alkyl structures with both elevated CO₂ and N fertilization. We suggest that microbial decomposition of SOM constituents such as lignin and hydrolysable lipids was promoted under both elevated CO₂ and N fertilization, which led to the enrichment of plant‐derived recalcitrant structures (such as alkyl carbon) in the soil.     

Effects of the Addition of Humic Substances on Soil Protease Activities in Andosols in the Presence of Cadmium

Cadmium extraction, sorption, and immobilization seem to be the effective mechanisms in detoxification of Cd-contaminated soil. Humic substances present in soils may play an important role both in controlling the negative effects of pollution with Cd and in stabilizing soil enzymes. In this context, we have compared the effects of humic substances on soil protease activities in the presence and absence of Cd in forest and cultivated field soil samples. The samples were taken from surface soils of Andosols in a single upland area of the Kanto district in Japan. Humic substances extracted from the two soils showed differences in elemental composition, the degree of condensation of aromatic groups, and the proportions of major functional groups. Compared with the control soil samples, those with added humic substances showed a significant increase in protease activities, even in the presence of Cd (10 and 50 mg Cd kg^?1 soil). However, the addition of Cd decreased the protease activities, protein contents, and soil pH in both soil samples at each of the two levels of humic substance fortification (+5% and +10%). Moreover, protease activities showed significant negative correlation with exchangeable Cd, but adding humic substances did not lead to a reduction in either sample. Thus, although the addition of humic substances increased and stabilized protease activities, it did not lead to a clear reversal of enzyme inhibition by Cd. The obtained results indicate that in both soil samples the humic substances used in this study did not have sufficient affinity to adsorb Cd, and the impact on enzyme activities depends on the difference in chemical characteristics of the added organic matter, as suggested by the difference in enhancement of protease activities between forest and cultivated field soil samples.     

腐殖质在环境污染物生物降解中的作用研究进展

腐殖质物质在地球的生态环境中大量存在,它不仅可以在有毒化合物的生物降解和生物转化过程中起到氧化还原中间体的作用,加速有毒物质的降解和转化。也可以作为唯一末端电子受体,接受来自一些有机酸或者甲苯等环境中有毒物质提供的电子,偶联能量的产生,支持菌体的生长,形成一种新的细菌厌氧呼吸形式——腐殖质呼吸。因此,对腐殖质在环境有毒物质的生物降解和生物转化过程中的作用进行研究,不仪对于深入理解细菌呼吸的本质具有重要的理论意义,而且对于环境有毒物质的降解和转化以及元素的生物地球化学循环具有重要的生态学意义,同时对地球表面的有毒物质进行更有效的生物降解具有重要的现实意义。     

Mechanisms of alkaline buffering by peat and quantitative estimation of its buffering capacity

The alkaline buffering capacity of humic substances in persistent organic materials such as peats has been utilized for remediation of alkaline soils. The purposes of the present study were to reveal the mechanism of alkaline buffering and to quantify the alkaline buffering capacity of humic substances contained in three peat samples obtained from Hokkaido, Canada, and Sri Lanka. Acidic functional groups in humic acid and fulvic acid extracted from the three natural peats were quantified by alkalimetric titration and pK distribution analyses of the titration curves. The results indicate that the inherent degree of humification of the organic matter can be identified from the pK distribution, which showed that the humic substances in peats contained diprotic acids. The present study also showed that the ratios of amounts of deprotonation to organic carbon content, as well as the organic carbon content, were needed for quantification of the pH buffering capacity. Moreover, the study showed that the composition of the peat from Sri Lanka was different from those of other peats and that it is a effective organic material for buffering under alkaline conditions.     

Soil textural class plays a major role in evaluating the effects of land use on soil quality indicators

Inappropriate land use that negatively affects ecological processes and soil quality is generally considered to be the primary cause of soil degradation in tropical agroecosystems. We hypothesized that in addition to land use, soil textural class also has an important effect on ecological processes and soil quality. To test our hypothesis, effects of land use change on soil organic fractions as well as microbial and biochemical indicators were quantified for clayey and sandy-clay-loam soils within the native Cerrado biome, pasture (Brachiaria brizantha) and sugarcane (Saccharum officinarum) agroecosystems in southwestern Brazil (Minas Gerais state). Labile carbon, humic substances, soil microbial respiration (SMR), microbial biomass carbon (MBC), metabolic quotient (qCO₂), hydrolysis of fluorescein diacetate (FDA), beta-glucosidase, urease, phosphatase and arylsulphatase activities were measured for each sample. Labile carbon concentrations were not affected by land use but were lower in sandy-clay-loam soil than clayey soil. Humic substances were at the highest concentrations in the native Cerrado and the lowest in sugarcane agroecosystems. Sandy-clay-loam soil had lower humic acid concentrations than clayey soil. Soil microbial indicators (SMR, MBC and FDA) showed lower values in pasture and sugarcane agroecosystems than in the native Cerrado. FDA was a more sensitive microbial indicator than SMR and MBC for detecting land use and textural class differences. The qCO₂ indices were greater in sugarcane systems than in either pasture or native Cerrado systems. The activity of exocellular hydrolytic enzymes, such as beta-glucosidase, urease, phosphatase and arylsulphatase, was smaller in sugarcane and pasture agroecosystems than in native Cerrado ecosystems. Within the same land use, the activity of these enzymes was always greater in clayey soil than in sandy-clay-loam soil, indicating a higher impact of land uses on enzyme activities in clayey soils. Results for the measured indicators support the hypothesis that soil textural class plays a major role in assessing differences between land use systems in the Brazilian Cerrado biome.     

冻融环境下亚高山森林凋落叶添加对土壤腐殖质动态的影响

亚高山森林土壤形成过程中,胡敏酸、富里酸等腐殖物质的累积是维持土壤肥力及物质循环的重要途径,它受到土壤基质质量、凋落叶和环境因素的调控.本研究以川西亚高山典型的针叶林、针阔混交林和阔叶林土壤为对象,采用室内培养控制冻融环境和凋落叶添加的方法,研究冻融环境下凋落叶添加对土壤腐殖物质累积的影响.结果表明:冻融循环环境下针叶林土壤腐殖质含量升高,而针阔混交林和阔叶林土壤腐殖质含量降低,且凋落叶对土壤腐殖质含量无显著影响.培养前期冻融环境下3种林型土壤胡敏酸净累积,净累积量大小为针阔混交林>针叶林>阔叶林,富里酸含量下降,下降程度为阔叶林>针阔混交林>针叶林,且凋落叶对土壤胡敏酸和富里酸含量无显著影响.随培养时间的延长,3种林型土壤胡敏酸及富里酸含量均下降.这表明,凋落叶对土壤腐殖质含量的影响与土壤基质质量存在密切关系,且受到冬季土壤冻融时间长短的影响.     

禾草内生真菌对其它微生物的影响研究进展

禾草内生真菌在宿主植物的茎叶等地上组织中普遍存在,不仅能够提高禾草对生物与非生物逆境的抗性,而且能够对周围环境中的不同微生物类群产生影响。主要总结了禾草Neotyphodium/Epichlo内生真菌对病原真菌、丛枝菌根真菌和土壤微生物的影响及其作用机理。发现禾草内生真菌普遍存在对病原真菌的抑制作用,而对丛枝菌根真菌存在不对称的竞争作用,且因种类而异。禾草内生真菌对土壤微生物群落的作用则会随着土壤类型和时间等外界因素发生变化。禾草内生真菌对不同类群微生物的影响机制主要包括:通过生态位竞争、抑菌物质分泌、诱导抗病性等对病原真菌造成影响;通过根系化学物质释放、营养元素调节、侵染条件差异等对丛枝菌根真菌造成影响;通过根际沉积物和凋落物等对土壤微生物群落造成影响。禾草内生真菌产生的生物碱能提高宿主植物对包括昆虫在内草食动物采食的抗性,影响病原菌的侵入、定殖和扩展;根组织分泌物中包含次生代谢产物能够抑制菌根真菌、土传病原真菌及其它土壤微生物的侵染与群落组成;也可能通过次生代谢物影响禾草的其它抗性。因此,禾草内生真菌在植物-微生物系统中的作用应该给予更多的关注和深入研究。     

环境因子对西藏高原草地植物丛枝菌根真菌的影响

对西藏高原不同草地类型建群种植物的研究结果表明,寄主植物根围土壤AM真菌孢子密度与菌根侵染率之间无相关性;不同海拔条件下温度、降水量等的显著变化对草地植物AM真菌的发育和侵染具有重要影响,不同草地类型、土壤质地对AM真菌的影响亦较明显;在一定范围内,孢子密度随土壤pH、有机质含量的提高分别呈显著增加(r=0.5319^*,n=20)和下降趋势(r=-0.1973,n=20),菌根侵染率与土壤pH、有机质含量间则分别呈一定程度的负相关和正相关;高磷土壤环境对AM真菌的产孢和侵染均具有不同程度的抑制作用;最适AM真菌发育和产孢的土壤pH、有机质和有效磷含量范围分别为8.0～8.7、3.8～4.8g·kg和7.8～10.1mg·kg^-1;中度特别是重度退化草地对AM真菌的繁殖和侵染均具有不利影响,适度放牧对AM真菌关键种的保持具有重要意义;AM真菌对沙生苔草、矮生嵩草和扁穗莎草根系均具有良好的侵染效应.     

Transformation of rock phosphate during composting and the effect of humic acid

Summary Phosphorus from Mussoorie rock phosphate (MRP) was solubilized and transformed into available forms when MRP was incorporated during composting of organic wastes. Clusterbean and redgram utilized phosphorus efficiently from the phosphorus enriched compost containing 3.1% P when added in the soil of pH 7.6 to 7.8. The solubilization of phosphorus during composting has been attributed to the formation of humic substances.     

Anin vitro effect of soil organic matter fractions and synthetic humic acids on the generation of superoxide radicals

Summary Humic acid, and the acid-extracted residue obtained from it, stimulated the production of superoxide radicals (O₂ ^.–) generated in the xanthine-xanthine oxidase system. Several synthetic humic acids, prepared by the oxidation of simple phenolic substances, also stimulated the production of O₂ ^.– but the degree of stimulation depended on the initial phenol. Fulvic acid and water-extractable soil organic matter were less effective in stimulating O₂ ^.– production than was humic acid. The activity of superoxide dismutase, an enzyme which destroys O₂ ^.–, was also enhanced by HA. In contrast, fulvic acid and water-extractable soil organic matter had little effect on the activity of the dismutase.     

Removal of Humic Substances from Aqueous Solution by Fungal Pellets

The removal of humic substances from aqueous solution at pH=4.8 and 6.0 and 25 °C by pure culture of Aspergillus niger has been examined. The removal of humic substances from aqueous phase was monitored by following the decrease in absorbance at 370 nm. COD and fungal growth were also measured. The initial concentration of humic and fulvic acids, pH and diameter of fungal pellets were found to be the most important parameters. The results suggested that decolorization of batch culture was a consequence of several processes. In the first 5 hours for pellets with diameter 1-3 mm and 10 hours for pellets with diameter 2-5 mm adsorption of humic substances was dominant. Afterwards, desorption of slightly bound humic substances and their degradation, as well as degradation of remaining humic substances in the solution, continued simultaneously through the period of 10 days.     

Highly diverse fungal communities in carbon-rich aquifers of two contrasting lakes in Northeast Germany

Fungi are an important component of microbial communities and are well known for their ability to decompose refractory, highly polymeric organic matter. In soils and aquatic systems, fungi play an important role in carbon processing, however, their diversity, community structure and function as well as ecological role, particularly in groundwater, are poorly studied. The aim of this study was to examine the fungal community composition, diversity and function in groundwater from 16 boreholes located in the vicinity of two lakes in NE Germany that are characterized by contrasting trophic status. The analysis of 28S rRNA gene sequences amplified from the groundwater revealed high fungal diversity and clear differences in community structure between the aquifers. Most sequences were assigned to Ascomycota and Basidiomycota, but members of Chytridiomycota, Cryptomycota, Zygomycota, Blastocladiomycota, Glomeromycota and Neocallimastigomycota were also detected. In addition, 27 species of fungi were successfully isolated from the groundwater samples and tested for their ability to decompose complex organic polymers – the predominant carbon source in the groundwater. Most isolates showed positive activities for at least one of the tested polymer types, with three strains, belonging to the genera Gibberella, Isaria and Cadophora, able to decompose all tested substrates. Our results highlight the high diversity of fungi in groundwater, and point to their important ecological role in breaking down highly polymeric organic matter in these isolated microbial habitats.     

Modelling the production and transport of dissolved organic carbon in forest soils

DyDOC describes soil carbon dynamics, with a focus on dissolved organic carbon (DOC). The model treats the soil as a three-horizon profile, and simulates metabolic carbon transformations, sorption reactions and water transport. Humic substances are partitioned into three fractions, one of which is immobile, while the other two (hydrophilic and hydrophobic) can pass into solution as DOC. DyDOC requires site-specific soil characteristics, and is driven by inputs of litter and water, and air and soil temperatures. The model operates on hourly and daily time steps, and can simulate carbon cycling over both long (hundreds-to-thousands of years) and short (daily) time scales. An important feature of DyDOC is the tracking of ¹⁴C, from its entry in litter to its loss as DO¹⁴C in drainage water, enabling information about C dynamics to be obtained from both long-term radioactive decay, and the characteristic ¹⁴C pulse caused by thermonuclear weapon testing during the 1960s ("bomb carbon"). Parameterisation is performed by assuming a current steady state. Values of a range of variables, including C pools, annual DOC fluxes, and ¹⁴C signals, are combined into objective functions for least-squares minimisation. DyDOC has been applied successfully to spruce forest sites at Birkenes (Norway) and Waldstein (Germany), and most of the parameters have similar values at the two sites. The results indicate that the supply of DOC from the surface soil horizon to percolating water depends upon the continual metabolic production of easily leached humic material. In contrast, concentrations and fluxes of DOC in the deeper soil horizons are controlled by sorption processes, involving comparatively large pools of leachable organic matter. Times to reach steady state are calculated to be several hundred years in the organic layer, and hundreds-to-thousands of years in the deeper mineral layers. It is estimated that DOC supplies 89% of the mineral soil carbon at Birkenes, and 73% at Waldstein. The model, parameterised with "steady state" data, simulates short-term variations in DOC concentrations and fluxes, and in DO¹⁴C, which are in approximate agreement with observations.     

C/N Ratio Drives Soil Actinobacterial Cellobiohydrolase Gene Diversity

Cellulose accounts for approximately half of photosynthesis-fixed carbon; however, the ecology of its degradation in soil is still relatively poorly understood. The role of actinobacteria in cellulose degradation has not been extensively investigated despite their abundance in soil and known cellulose degradation capability. Here, the diversity and abundance of the actinobacterial glycoside hydrolase family 48 (cellobiohydrolase) gene in soils from three paired pasture-woodland sites were determined by using terminal restriction fragment length polymorphism (T-RFLP) analysis and clone libraries with gene-specific primers. For comparison, the diversity and abundance of general bacteria and fungi were also assessed. Phylogenetic analysis of the nucleotide sequences of 80 clones revealed significant new diversity of actinobacterial GH48 genes, and analysis of translated protein sequences showed that these enzymes are likely to represent functional cellobiohydrolases. The soil C/N ratio was the primary environmental driver of GH48 community compositions across sites and land uses, demonstrating the importance of substrate quality in their ecology. Furthermore, mid-infrared (MIR) spectrometry-predicted humic organic carbon was distinctly more important to GH48 diversity than to total bacterial and fungal diversity. This suggests a link between the actinobacterial GH48 community and soil organic carbon dynamics and highlights the potential importance of actinobacteria in the terrestrial carbon cycle.