THE INFLUENCE OF SELF-FERTILIZATION AND POPULATION DYNAMICS ON THE GENETIC STRUCTURE OF SUBDIVIDED POPULATIONS: A CASE STUDY USING MICROSATELLITE MARKERS IN THE FRESHWATER SNAIL BULINUS TRUNCATUS

The distribution of neutral genetic variability within and among sets of populations results from the combined actions of genetic drift, migration, extinction and recolonization processes, mutation, and the mating system. We here analyzed these factors in 38 populations of the hermaphroditic snail Bulinus truncatus. The sampling area covered a large part of the species range. The variability was analyzed using four polymorphic microsatellite loci. A very large number of alleles (up to 55) was found at the level of the whole study. Observed heterozygote deficiencies within populations are consistent with very high selfing rates, generally above 0.80, in all populations. These should depress the variability within populations, because of low effective size, genetic hitchhiking, and background selection, whatever the model of mutation assumed. However, that some populations exhibit much more variability than others suggests that historical demographic processes (e.g., population size variation, bottlenecks, or founding events) may play a significant role. A hierarchical analysis of the distribution of the variability across populations indicates a strong pattern of isolation by distance, whatever the geographical scale considered. Our analysis also illustrates how the mutation rate may affect population differentiation, as different mutation rates result in different levels of homoplasy at microsatellite loci. The effects of both genetic drift and gene flow vary with the temporal and spatial scales considered in B. truncatus populations.     

THE INFLUENCE OF INTRASPECIFIC VARIATION IN DISPERSAL STRATEGIES ON THE GENETIC STRUCTURE OF PLANTHOPPER POPULATIONS

The hypothesis that levels of gene flow among populations are correlated with dispersal ability has typically been tested by comparing gene flow among species that differ in dispersal abilities, an approach that potentially confounds dispersal ability with other species-specific differences. In this study, we take advantage of geographic variation in the dispersal strategies of two wing-dimorphic planthopper species, Prokelisia marginata and P. dolus, to examine for the first time whether levels of gene flow among populations are correlated with intraspecific variation in dispersal ability. We found that in both of these coastal salt marsh–inhabiting species, population-genetic subdivision, as assessed using allozyme electrophoresis, parallels geographic variation in the proportion of flight-capable adults (macropters) in a population; in regions where levels of macroptery are high, population genetic subdivision is less than in regions where levels of macroptery are low. We found no evidence that geographic variation in dispersal capability influences the degree to which gene flow declines with distance in either species. Thus, both species provided evidence that intraspecific variation in dispersal strategies influences the genetic structure of populations, and that this effect is manifested in population-genetic structure at the scale of large, coastal regions, rather than in genetic isolation by distance within a region. This conclusion was supported by interspecific comparisons revealing that: (1) population-genetic structure (G_ST) of the two Prokelisia species correlated negatively with the mean proportion of flight-capable adults within a region; and (2) there was no evidence that the degree of isolation by distance increased with decreasing dispersal capability. Populations of the relatively sedentary P. dolus clustered by geographic region (using Nei's distances), but this was not the case for the more mobile P. marginata. Furthermore, gene flow among the two major regions we surveyed (Atlantic and Gulf Coasts) has been substantial in P. marginata, but relatively less in P. dolus. The results for P. marginata suggest that differences in the dispersal strategies of Atlantic and Gulf Coast populations occur despite extensive gene flow. We argue that gene flow is biased from Atlantic to Gulf Coast populations, indicating that selection favoring a reduction in flight capability must be intense along the Gulf. Together, the results of this study provide the first rigorous evidence of a negative relationship within a species between dispersal ability and the genetic structure of populations. Furthermore, regional variation in dispersal ability is apparently maintained by selective differences that outweigh high levels of gene flow among regions.     

GENETIC DRIFT AND COLLECTIVE DISPERSAL CAN RESULT IN CHAOTIC GENETIC PATCHINESS

Chaotic genetic patchiness denotes unexpected patterns of genetic differentiation that are observed at a fine scale and are not stable in time. These patterns have been described in marine species with free‐living larvae, but are unexpected because they occur at a scale below the dispersal range of pelagic larvae. At the scale where most larvae are immigrants, theory predicts spatially homogeneous, temporally stable genetic variation. Empirical studies have suggested that genetic drift interacts with complex dispersal patterns to create chaotic genetic patchiness. Here we use a coancestry model and individual‐based simulations to test this idea. We found that chaotic genetic patterns (qualified by global F_ST and spatio‐temporal variation in F_ST's between pairs of samples) arise from the combined effects of (1) genetic drift created by the small local effective population sizes of the sessile phase and variance in contribution among breeding groups and (2) collective dispersal of related individuals in the larval phase. Simulations show that patchiness levels qualitatively comparable to empirical results can be produced by a combination of strong variance in reproductive success and mild collective dispersal. These results call for empirical studies of the effective number of breeders producing larval cohorts, and population genetics at the larval stage.     

HYDROTHERMAL-VENT ALVINELLID POLYCHAETE DISPERSAL IN THE EASTERN PACIFIC. 2. A METAPOPULATION MODEL BASED ON HABITAT SHIFTS

Marine organisms typically fall into two main categories: those with a high level of population structuring and those with a low one. The first are often found to be poor dispersers, following isolation by distance or stepping-stone theoretical predictions. The second are commonly associated with high-dispersal taxa and are best described by the island model. Deep-sea hydrothermal vent systems represent a good model for studying one-dimensional metapopulations. Whereas isolation by distance might be expected to be the rule in such a system for species with limited dispersal capabilities, a biological paradox can be observed: an apparent genetic homogeneity in some vent species with short-scale dispersal potential, in a one-dimensional fragmented habitat. This can be explained if one key assumption of the existing models is not met: gene flow between populations and genetic drift may not have the time to equilibrate. Geophysical models revealed that hydrothermal convection is intrinsically unstable, inducing processes of coalescence or splitting of venting areas in a chaotic manner. This is likely to generate frequent extinctions and recolonizations. Theoretical genetic predictions derived from extinctions/recolonizations cannot satisfactorily model a situation where habitat shifts are frequent and constantly affect the metapopulation equilibrium. Because neither the island and the stepping-stone models nor the classical metapopulation models resemble the hydrothermal vent reality, we present here a realistic model developed to provide a compromise between existing conceptual models and what is currently known of the biology and ecology of one of the most peculiar and best-studied vent species, the polychaete Alvinella pompejana. This model allows us to define the boundaries between which the metapopulation is evolutionary stable in an unstable context. Simulations show different patterns in which metapopulation size and recolonization vary but reach an equilibrium despite chaotic vent extinctions. In contrast, the model also shows that displacing habitat continuously affects the equilibrium between gene flow and drift. As a consequence, the time required to balance these evolutionary forces can never be attained, leading to chaotic fluctuations in F-statistics. Those fluctuations are mainly due to stochastic changes of the interpatch distance which affect migration rates. The shifting of active zones of venting can episodically counterbalance differentiation and allow a long-term genetic homogenization at the ridge scale. These findings lead to a new concept in which the exchanges between populations would mainly depend on the habitat's movements along the ridge axis rather than the organim's dispersal. We therefore propose a new model based on patch-network displacements in which transient contact zones allow low levels of gene flow throughout the metapopulation.     

GENE DISPERSAL AND SPATIAL GENETIC STRUCTURE

Spatial autocorrelation statistics have been studied in theoretical population genetic models and widely used in experimental studies of spatial structure in many plant and animal populations. However, the statistical properties of spatial autocorrelation statistics have remained uncharacterized. Little is known about how values of spatial autocorrelation statistics in population samples depend on the level of dispersal and scheme of sampling. In this paper, we characterize the statistical properties of join-count spatial autocorrelation statistics for population genetic surveys under various conditions of dispersal and sampling. The results indicate generally high statistical power. These results can provide a method to estimate gene dispersal based on standing spatial patterns of genetic variation observed within populations.     

POPULATION GENETIC STRUCTURE OF CECROPIA OBTUSIFOLIA,A TROPICAL PIONEER TREE SPECIES

Theoretical analyses of the genetic organization of pioneer species have postulated two very different scenarios. Some models have predicted that such species would show strong population substructuring, whereas other models have suggested that extinction and recolonization can augment gene flow and reduce interpopulation differentiation. We tested these alternative scenarios by analyzing the genetic structure of eight loci from populations of the pioneer dioecious tree, Cecropia obtusifolia, in the tropical rain forest region of Los Tuxtlas, México. The populations studied exhibit low overall F_ST values, no clear pattern of isolation by distance, and high estimates of gene flow. These results suggest either that the species is not at a genetic equilibrium under present levels of gene flow with populations derived from each other in the recent past, or that pollen and seed dispersal in this species occur over long distances (up to more than 100 km). Mating among relatives appears higher than expected by chance based on significantly positive fixation indices (F) and F_IS values at some loci. However, no direct evidence for biparental inbreeding was found. The multilocus and single-locus outcrossing rates for C. obtusifolia were estimated at t_m = 0.974 (SE = 0.024) and t_s = 0.980 (SE = 0.035), respectively. These are not significantly different from 1, and the difference, t_m — t_s = — 0.006 (SE = 0.018), is not significantly different from 0. These estimates, however, could be biased because in all enzymes, except PGM-1, we found statistically significant departures from the mixed-mating model used to estimate them. Two rare alleles were found only in seeds collected from the soil, and the greatest number of different alleles were found also in soil seeds. It is hypothesized that the seed bank may play an important role in the genetic buffering of C. obtusifolia. Significantly positive or negative fixation indices in adults at some loci and significantly different heterozygosities among different life stages (from seeds to adults) suggest the action of selection at some loci.     

POPULATION GENETICS AND COLONY STRUCTURE OF THE ARGENTINE ANT (LINEPITHEMA HUMILE) IN ITS NATIVE AND INTRODUCED RANGES

Abstract.— Introduced species often possess low levels of genetic diversity relative to source populations as a consequence of the small population sizes associated with founder events. Additionally, native and introduced populations of the same species can possess divergent genetic structuring at both large and small geographic scales. Thus, genetic systems that have evolved in the context of high diversity may function quite differently in genetically homogeneous introduced populations. Here we conduct a genetic analysis of native and introduced populations of the Argentine ant (Linepithema humile) in which we show that the population‐level changes that have occurred during introduction have produced marked changes in the social structure of this species. Native populations of the Argentine ant are characterized by a pattern of genetic isolation by distance, whereas this pattern is absent in introduced populations. These differences appear to arise both from the effects of recent range expansion in the introduced range as well as from differences in gene flow within each range. Relatedness within nests and colonies is lower in the introduced range than in the native range as a consequence of the widespread genetic similarity that typifies introduced populations. In contrast, nestmates and colony‐mates in the native range are more closely related, and local genetic differentiation is evident. Our results shed light on the problem posed for kin selection theory by the low levels of relatedness that are characteristic of many unicolonial species and suggest that the loss of genetic variation may be a common mechanism for the transition to a unicolonial colony structure.     

THE INFLUENCE OF DENSITY AND SEX ON PATTERNS OF FINE-SCALE GENETIC STRUCTURE

Natal philopatry is expected to limit gene flow and give rise to fine-scale spatial genetic structure (SGS). The banner-tailed kangaroo rat ( Dipodomys spectabilis ) is unusual among mammals because both sexes are philopatric. This provides an opportunity to study patterns of local SGS faced by philopatric and dispersing animals. We evaluated SGS using spatial genetic autocorrelation in two D. spectabilis populations (Rucker and Portal) over a 14-year temporal series that covered low, medium, and high population densities. Significantly positive autocorrelation values exist up to 800 m at Rucker and 400 m at Portal. Density was negatively associated with SGS (low >medium >high), and suggests that increases in density are accompanied by greater spatial overlap of kin clusters. With regard to sex-bias, we find a small but significant increase in the SGS level of males over females, which matches the greater dispersal distances observed in females. We observed variation in SGS over the ecological time scale of this study, indicating genetic structure is temporally labile. Our study is the first temporal exploration of the influence of density and sex on spatial genetic autocorrelation in vertebrate populations. Because few organisms maintain discreet kin clusters, we predict that density will be negatively associated with SGS in other species.     

GENETIC POPULATION STRUCTURE AND MATING SYSTEM IN CHONDRUS CRISPUS (RHODOPHYTA)1

Chondrus crispus Stackh. has been intensely studied, yet no study to date has elucidated its population structure or mating system despite many populations in which there was a haploid bias and lack of male gametophytes. Therefore, 12 nuclear microsatellite loci were identified in this red alga. Microsatellite markers were developed and tested against a panel of specimens collected from two shore levels at two sites in Brittany, France: Pointe de Primel and Pointe de la Jument, Concarneau. Single locus genetic determinism was verified at eight polymorphic loci, as only one band was observed for haploid genotypes, whereas one or two bands were observed for diploids. These markers enabled the detection of unique genotypes within sampled populations, indicating that very few fronds shared the same multilocus genotype. This finding suggests that asexual reproduction was not the prevailing mode of reproduction. In addition, we explored the hierarchical population structure showing that gene flow is restricted at small spatial scales (<50 m) between upper and lower Chondrus‐range populations within a shore. Sexual reproduction predominated in the populations of C. crispus studied, but probably due to fine‐scale spatial substructuring, inbreeding was also significant. In conclusion, this study reveals that fine‐scale genetic variation is of major importance in C. crispus, suggesting that differences between microhabitats should be essential in understanding evolutionary processes in this species.     

THE EVOLVING GENETIC HISTORY OF A POPULATION OF LATHYRUS SYLVESTRIS: EVIDENCE FROM TEMPORAL AND SPATIAL GENETIC STRUCTURE

We analyze patterns of genetic microdifferentiation within a natural population of Lathyrus sylvestris, a perennial herb with both sexual reproduction and clonal growth. In a population from the northern foothills of the Pyrénées in southwestern France, a combined demographic and genetic investigation enabled the study not only of spatial genetic structure of the population, but also of the history of the population's spatial genetic structure over time. Excavation of all individuals allowed identification of clonemates. Age of each individual was determined by counting annual growth rings in the taproot, a method tested with individuals of known age planted in experimental gardens. Each individual was mapped, and genotypes of all individuals were determined using allozyme markers for a number of polymorphic loci. Distribution patterns and spatial genetic structure, both for all individuals and for different age classes, were analyzed using spatial autocorrelation statistics (Geary's Index, Moran's Index). Patterns of gene flow within the population were also studied using F-statistics and tests for random associations of alleles. Because age, allele frequencies, and location were known for each individual, it was possible to study how spatial genetic structure changed over time. Results from all these diverse approaches are consistent with one another, and clearly show the following: (1) founder effects, with the study transect being first colonized by individuals at either end of the transect that were homozygous for different alleles at one marker locus; (2) a difference in spatial distribution of individuals originated from sexual reproduction (seedlings) and from clonal growth (connected individuals); (3) restricted gene flow, due to inbreeding among related, clumped individuals; and (4) increase in heterozygote deficit within the youngest cohort of individuals. The results indicate that genetic differentiation in time was much less marked than differentiation in space. Nevertheless, the results revealed that the studied population is experiencing demographic and genetic variation in time, suggesting that it is not at equilibrium. On the one hand, spatial structuring is becoming less marked due to the recombination of founder genotypes; on the other hand, as establishment of new individuals increases, a new spatial structure emerges due to mating between relatives.     

GENETIC STRUCTURE OF THE FROGS GEOCRINIA LUTEA AND GEOCRINIA ROSEA REFLECTS EXTREME POPULATION DIVERGENCE AND RANGE CHANGES,NOT DISPERSAL BARRIERS

I describe the genetic structure of two frog species, Geocrinia rosea and Geocrinia lutea, using allozyme electrophoresis to understand population structure and thereby possible mechanisms of divergence and speciation. The sampling regimes represented the entire range of both species and provided replicated tests of the impact of ridges, rivers, and dry forest on gene flow. Geocrinia rosea and G. lutea were highly genetically subdivided (F_ST = 0.69, 0.64, respectively). In the extreme, there were fixed allelic differences between populations that were only 4 km (G. rosea) or 1.25 km (G. lutea) apart. In addition to localized divergence, two-dimensional scaling of genetic distance allowed the recognition of broad-scale genetic groups, each consisting of several sample sites. Patterns of divergence were unrelated to the presence of ridges, rivers, or dry forest. I argue that range contraction and expansion, combined with extreme genetic divergence in single, isolated populations, best accounts for the genetic structure of these species.     

EFFECTS OF AVIAN SEED DISPERSAL ON THE GENETIC STRUCTURE OF WHITEBARK PINE POPULATIONS

We used allozyme analysis to examine family structure, the spatial patterning of related individuals, in two populations of whitebark pine (Pinus albicaulis), a subalpine conifer that commonly displays a multistem form. The individual stems within clumps are genetically distinct individuals, having arisen from separate seeds. Individuals within a clump are genetically more similar than individuals in different clumps, but individuals in neighboring clumps do not appear to be more similar than individuals in distant clumps. This family structure appears to be a direct result of the seed-caching behavior of Clark's nutcrackers (Nucifraga columbiana), the primary dispersal agent for whitebark pine seeds.     

MICROSATELLITE MARKERS REVEAL POPULATION GENETIC STRUCTURE OF THE TOXIC DINOFLAGELLATE ALEXANDRIUM TAMARENSE (DINOPHYCEAE) IN JAPANESE COASTAL WATERS1

This is the first report to explore the fine‐scale diversity, population genetic structure, and biogeography of a typical planktonic microbe in Japanese and Korean coastal waters and also to try to detect the impact of natural and human‐assisted dispersals on the genetic structure and gene flow in a toxic dinoflagellate species. Here we present the genetic analysis of Alexandrium tamarense (Lebour) Balech populations from 10 sites along the Japanese and Korean coasts. We used nine microsatellite loci, which varied widely in number of alleles and gene diversity across populations. The analysis revealed that Nei's genetic distance correlated significantly with geographic distance in pair‐wise comparisons, and that there was genetic differentiation in about half of 45 pair‐wise populations. These results clearly indicate genetic isolation among populations according to geographic distance and restricted gene flow via natural dispersal through tidal currents among the populations. On the other hand, high P‐values in Fisher's combined test were detected in five pair‐wise populations, suggesting similar genetic structure and a close genetic relationship between the populations. These findings suggest that the genetic structure of Japanese A. tamarense populations has been disturbed, possibly by human‐assisted dispersal, which has resulted in gene flow between geographically separated populations.     

GENETIC CONSEQUENCES OF SEED DISPERSAL IN THREE SYMPATRIC FOREST HERBS. I. HIERARCHICAL POPULATION-GENETIC STRUCTURE

To examine the effects of seed dispersal on spatial genetic structure, we compare three sympatric species of forest herbs in the family Apiaceae whose fruits differ widely in morphological adaptations for animal-attached dispersal. Cryptotaenia canadensis has smooth fruits that are gravity dispersed, whereas Osmorhiza claytonii and Sanicula odorata fruits have appendages that facilitate their attachment to animals. The relative seed-dispersal ability among species, measured as their ability to remain attached to mammal fur, is ranked Sanicula > Osmorhiza > Cryptotaenia. We use a nested hierarchical sampling design to analyze genetic structure at spatial scales ranging from a few meters to hundreds of kilometers. Genetic differentiation among population subdivisions, estimated by average genetic distance and hierarchical F-statistics, has an inverse relationship with dispersal ability such that Cryptotaenia > Osmorhiza > Sanicula. In each species, genetic differentiation increases with distance among population subdivisions. Stochastic variation in gene flow, arising from seed dispersal by attachment to animals, may partly explain the weak relationship between pairwise spatial and genetic distance among populations and heterogeneity in estimates of single locus F-statistics. A hierarchical island model of gene flow is invoked to describe the effects of seed dispersal on population genetic structure. Seed dispersal is the predominant factor affecting variation in gene flow among these ecologically similar, taxonomically related species.     

DISPERSAL AND GENETIC STRUCTURE IN KANGAROO RATS

We used spatial autocorrelation of allele frequencies to examine local structure in a population of bannertailed kangaroo rats for which Wright's isolation-by-distance model seems applicable, and for which we can estimate neighborhood size based on 10 years of data on demography and dispersal. The uniform dispersion and strong philopatric tendencies of this species provide a test case for the idea that restricted dispersal can lead to local genetic structure in small mammals. Whether we considered such complications as nonnormal dispersal distances, variation in lifetime reproductive success, fluctuating population density, and adult as well as juvenile dispersal, our estimate of effective population size was fewer than 15 animals. Nevertheless, data from four polymorphic allozyme loci analyzed over a range of separations between 50 m (approximately one home range diameter) and 1,000 m detected no evidence for spatial clustering of alleles. One resolution of this apparent paradox is that “gamete dispersal,” caused by the movements of males away from their residences during the breeding season, may be a significant (and unmeasured) component of gene dispersal. Our analyses also demonstrate that a decline in population density may actually increase neighborhood size. A more general implication is that even extremely philopatric mammals have effective population sizes large enough to prevent the development of local genetic structure.     

DISPERSAL, ROOKERY FIDELITY, AND METAPOPULATION STRUCTURE OF STELLER SEA LIONS (EUMETOPIAS JUBATUS) IN AN INCREASING AND A DECREASING POPULATION IN ALASKA

Over the past 24 yr, 8,596 Steller sea lion ( Eumetopias jubatus ) pups were branded on their natal rookeries throughout Alaska with the objectives of determining survival rates, recruitment, movements, and site fidelity. Our objectives here were to examine the extent of dispersal of Steller sea lions away from their natal rookeries, movements between stocks, and degree of natal rookery fidelity. Pups (<1 yr old) usually remained within 500 km of their natal rookery. Branded juveniles dispersed widely and were resighted at distances up to 1,785 km from their natal rookeries. Adults generally remained within 500 km of their natal rookeries. No interchange of breeding animals between the ES (eastern stock) and WS (western stock) was observed. Although natal rookery fidelity was prevalent, 33% of the 12 observations of females branded in the WS during 1987–1988 and 19% of the 29 observations of females branded in the ES during 1994–1995 were observed with newly born pups at sites other than their natal rookeries. Steller sea lions generally conformed to the metapopulation concept as depicted by Hanski and Simberloff (1997), with local breeding populations (rookeries) and movements among these local populations having the potential of affecting local dynamics.     

ESTIMATION OF GENETIC NEIGHBORHOOD PARAMETERS FROM POLLEN AND SEED DISPERSAL IN THE MARINE ANGIOSPERM ZOSTERA MARINA L.

The relative importance of random genetic drift and local adaptation in causing population substructuring in plant species remains an important empirical question. Here I estimate the effective size of the genetic neighborhood, N_b, as a means of evaluating the likely role of genetic drift in creating genetic differentiation within a population of a marine plant, Zostera marina L. (eelgrass). Calculations of effective neighborhood size are based on field estimates of pollen and seed-dispersal distributions, an electrophoretic estimate of the mating system using open-pollinated progeny arrays, and determination of the effective density of reproductive individuals in the population. Neighborhood area calculated from the parent-offspring dispersal variances was equal to N_a = 524 m²; variance in the seed-dispersal distribution contributes more than twice as much as variance in pollen dispersal to N_a. Including an outcrossing rate slightly different from random, estimated neighborhood size for Z. marina is N_b = 6255. This estimate is one of the largest reported for plants or animals and indicates that genetic drift in small neighborhoods is highly unlikely to cause genetic substructuring in the study population. High gene-flow levels provided by the marine environment appear to prevent genetic isolation by distance among eelgrass patches, but the importance of drift through founder events in this population characterized by high patch turnover cannot be discounted and is the subject of ongoing study.