Changes in mangrove forest soils: a comparison between cultured and naturally inundated conditions

A study was carried out in three shrimp farms in a natural mangrove area at the southeastern part of Bangladesh that dealt mainly with the changes in mangrove soil characteristics in both cultured and naturally inundated conditions. Some noticeable changes were observed in case of soil pH, sulfate sulfur(SO₄-S) and extractable aluminium (Al) where, soil pH has shown a negative correlation with the other two parameters. Al concentration reached its minimum 145 days after pond preparation (DAP) proving that flooding for longer periods reduced the possibility of acid and Al toxicity. Extractable sodium (Na) and potassium (K) gradually increased in the cultured ponds while in the inundated ponds, Na concentration remained stable but K increased significantly at the end of the study period. Results of the present study indicate that shrimp farming in an already depleted mangrove forest helps to improve soil quality but still, other management and environmental concerns related to intensive shrimp culture are unavoidable and should be taken into account before promoting such activities in mangrove areas. It is recommended that shrimp culture zone be established beyond the mangrove fringe where possible, to enable mangroves to buffer aquaculture effluent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Mariculture development in Kenya: alternatives to siting ponds in the mangrove ecosystem

Pond culture of brackishwater prawns and shrimps has recently generated much interest in Kenya. The mangrove areas are the target zones for the construction of these ponds. With the increasing awareness of the unique ecological role played by the mangroves, there is an urgent need to stop the conversion of mangrove swamps into aquaculture ponds. To develop pond aquaculture without destroying the mangroves, a shift from tide-fed to pump-fed pond systems is recommended in order to divert the farming from the mangroves to higher grounds. Mangrove-friendly mariculture practices like pen, cage and raft culture are discussed. Methods of efficiently utilising the already destroyed mangrove areas are considered.     

红树林湿地恢复研究进展

红树林是生长在热带、亚热带隐蔽潮间带的独特植物群落,在过去几十年内因人口压力和经济发展而遭到严重破坏,质量下降,面积萎缩.近年来,尽管世界各地采取了一系列措施进行红树林的恢复,然而由于缺乏造林技术资料、造林成活率低下、经营管理粗放,加上人为干扰和自然灾害的影响,红树林面积增长缓慢;造林成活率低依然是制约红树林湿地恢复的主要因素.总结了近年来国内外红树林湿地恢复四个方面的研究成果,即(1)宜林地选择,包括温度、底质、水文的环境条件研究;(2)树种选择与引种,包括乡土树种的选用和外来树种的引种状况;(3)栽培技术的应用,包括造林栽培技术与育苗技术,造林成本的比较;(4)植后管护及监测,包括幼林巡护、病虫害防治、生态监测,结合野外调查的结果,综述了红树林恢复的一些基本原理与应用实例.根据我国红树林湿地恢复的现状,提出今后红树林恢复研究的重点为:开展"退塘还林"工程,监测红树林湿地生态系统生物多样性的恢复,深入探讨红树林的化感作用,营造红树林混交林,实现红树林的生态恢复.     

Characterizing a tropical deforestation wave: a dynamic spatial analysis of a deforestation hotspot in the Colombian Amazon

Tropical deforestation is the major contemporary threat to global biodiversity, because a diminishing extent of tropical forests supports the majority of the Earth's biodiversity. Forest clearing is often spatially concentrated in regions where human land use pressures, either planned or unplanned, increase the likelihood of deforestation. However, it is not a random process, but often moves in waves originating from settled areas. We investigate the spatial dynamics of land cover change in a tropical deforestation hotspot in the Colombian Amazon. We apply a forest cover zoning approach which permitted: calculation of colonization speed; comparative spatial analysis of patterns of deforestation and regeneration; analysis of spatial patterns of mature and recently regenerated forests; and the identification of local‐level hotspots experiencing the fastest deforestation or regeneration. The colonization frontline moved at an average of 0.84 km yr^?1 from 1989 to 2002, resulting in the clearing of 3400 ha yr^?1 of forests beyond the 90% forest cover line. The dynamics of forest clearing varied across the colonization front according to the amount of forest in the landscape, but was spatially concentrated in well‐defined ‘local hotspots’ of deforestation and forest regeneration. Behind the deforestation front, the transformed landscape mosaic is composed of cropping and grazing lands interspersed with mature forest fragments and patches of recently regenerated forests. We discuss the implications of the patterns of forest loss and fragmentation for biodiversity conservation within a framework of dynamic conservation planning.     

海南两种红树林植物内生真菌的多样性分析

以海南红树林植物红海榄和秋茄为对象,研究了两种植物的内生真菌的多样性。结果表明:红海榄和秋茄的枝、叶中分别分离到内生真菌30株和27株,内生真菌的优势属分别是茎点霉属和拟盘多毛孢属;同种植物的枝和叶中内生真菌的定殖率差异显著;红海榄和秋茄内生真菌的多样性指数分别为1.7890和1.7473,均匀度指数分别为0.5260和0.5302。两种红树林植物的内生真菌显示出丰富的多样性。     

Growth and respiration in two mangrove species at a range of salinities

Growth and dark respiration rates were measured in leaves and roots of seedlings of Avicennia marina (Forsk.) Vierh, (grey mangrove), and Aegiceras corniculatum (L.) Blanco (river mangrove). Plants were grown in a soil mixture at ambient temperatures and watered with 0.25 and 100% sea-water. Oxygen uptake was measured in excised root and leaf samples. In both species growth was maximal in 25% sea-water, and root respiration was lowest in 100% sea-water. Differences were found between the two species in the responses of leaf respiration to salinity. In A. corniculatum leaf respiration was raised in both 25 and 100% sea-water, while in A. marina only leaves in 100% sea-water showed higher rates of respiration. These results are consistent with the view that A. marina is the more salt-tolerant of the two species. In A. corniculatum the respiration rates of the hypocotyl were also measured, and were much higher in 100% sea-water than in the other two treatments. The results suggest that at high salinities there is a high metabolic cost in the shoots of both species, and that at such salinities rates of root respiration may be limited by the supply of substrate from the shoots.     

Jump‐starting coastal wetland restoration: a comparison of marsh and mangrove foundation species

During coastal wetland restoration, foundation plant species are critical in creating habitat, modulating ecosystem functions, and supporting ecological communities. Following initial hydrologic restoration, foundation plant species can help stabilize sediments and jump‐start ecosystem development. Different foundation species, however, have different traits and environmental tolerances. To understand how these traits and tolerances impact restoration trajectories, there is a need for comparative studies among foundation species. In subtropical and tropical climates, coastal wetland restoration practitioners can sometimes choose between salt marsh and/or mangrove foundation species. Here, we compared the early life history traits and environmental tolerances of two foundation species: (1) a salt marsh grass (Spartina alterniflora) and (2) a mangrove tree (Avicennia germinans). In an 18‐month study of a recently restored coastal wetland in southeastern Louisiana (USA), we examined growth and survival along an elevation gradient and compared expansion and recruitment rates. We found that the rapid growth, expansion, and recruitment rates of the salt marsh grass make it a better species for quickly establishing ecological structure at suitable elevations. The slower growth, limited expansion, and lower recruitment of the mangrove species show its restricted capacity for immediate structural restoration, especially in areas where it co‐occurs with perennial salt marsh species. Our findings suggest that the structural attributes needed in recently restored areas can be achieved sooner using fast‐growing foundation species. Following salt marsh grass establishment, mangroves can then be used to further assist ecosystem development. This work highlights how appropriate foundation species can help jump‐start ecosystem development to meet restoration objectives.     

Nitrogen enrichment during decomposition of mangrove leaf litter in an east African coastal lagoon (Kenya): Relative importance of biological nitrogen fixation

In situ decomposition of senescent leaves of twoabundant mangrove species (Rhizophora mucronataLamarck and Ceriops tagal (Perr) C.B. Rob),enrichment of nitrogen and activity of dinitrogenfixing bacteria during decomposition were investigatedduring both rainy and dry seasons in a tropicalcoastal lagoon (Gazi, Kenya). Rates of leafdecomposition were higher for R. mucronata thanfor C. tagal and were highest, for both species,during rainy season. Rates of decomposition, expressedas percentage dry mass loss, over a decompositionperiod of 50 days was: C. tagal (rainy season),69%; C. tagal (dry season), 27%; R.mucronata (rainy season), 98%; and R.mucronata (dry season), 48%. High rainfall anddiurnal tidal inundation appear to enhance the leafdecomposition process. Maximum rates of nitrogenfixation were 380 nmol N₂ h^-1 g^-1 dw forC. tagal (rainy season), 78 nmolN₂ h^-1 g^-1 dw for C. tagal (dryseason), 390 nmol N₂ h^-1 g^-1 dw for R. mucronata (rainy season) and 189 nmolN₂ h^-1 g^-1 dw for R. mucronata (dry season). Although N₂ fixation rates werehighest during rainy season, total nitrogenimmobilised in the leaves was highest during the dryseason. Biological nitrogen fixation can account forbetween 13 to 21% of the maximum nitrogen immobilisedin the decaying mangrove leaves. Nitrogen fixation, asa source of allochthonous nitrogen, sustains anitrogen input to the mangrove ecosystem, which addssignificantly to the nitrogen input through leaflitterfall.     

The value of a mangrove area in Sarawak

Many arguments have been presented to justify the conservation of tropical forests. In the case of mangrove forests, their preservation can be argued using economic and employment grounds alone. A case study of the Sarawak Mangroves Forest Reserve, Malaysia is presented. Here, the mangroves support marine fisheries worth US$21.1 million p.a. and up to 3000 jobs, timber products worth US$123,217 p.a., and a tourist industry worth US$3.7 million p.a. If the mangroves were to be damaged, all of the fisheries and timber and many of the tourism benefits would be lost. In addition, highly expensive civil engineering works would be incurred to prevent coastal erosion, flooding and other damage. The area is also one of the only remaining refuges for mangrove flora and fauna in Sarawak. If the area were to be converted to aquaculture ponds or oil palm plantations, levels of revenue would be greatly reduced, and the multiple other benefits of mangroves would be lost. Coastal land pressure is not a limiting factor in the State. Considering their economic, employment, coastal protection and species conservation values, mangroves should be conserved and their importance taken into account at all levels in development planning.     

Temporal patterns in a fish assemblage of a semiarid mangrove zone in Madagascar

Gillnet sampling was conducted for a year in a tropical mangrove creek (SW Madagascar), characterized by a limited freshwater influence, a high turbidity and a tidal range up to 3 m. Sixty species of juvenile fishes were caught, 44 species being of commercial interest. Catches were dominated by Gerreidae (27% of total abundance), Teraponidae (16%), Carangidae (13%) and Sparidae (12%). The temporary resident fishes in the mangrove zone represented 50% of the species and 97% of the total abundance, the other species being rare (less than five individuals). The species richness, abundance and biomass per netting were low in the middle of the cool season (July-August). Monthly changes in the fish assemblage were particularly complex, with three species groups displaying a clear seasonal pattern, some species succeeding one another in a rather unstructured way, and three species abundant throughout the year. There was no clear structuring effect of temperature, salinity and turbidity on the fish assemblage. However, tidal, lunar and diel effects on the composition of the fish assemblage were evident. The species overlap between the Sarodrano mangrove fauna and the adjacent coral reef fauna is particularly weak with six species in common and shows that the mangrove plays only a very limited nursery role for coral reef species.     

深圳湾福田红树林群落演替

对深圳湾福田凤塘河红树林演替过程中的群落结构、物种组成、多样性变化及演替趋势的研究结果表明:(1)演替各阶段群落均由秋茄(Kandelia candel)、木榄(Bruguiera gymnorrhiza)、桐花树(Aegiceras corniculatum)、白骨壤(Avicennia marina)及老鼠簕(Acanthus ilicifolius)5个种类组成。(2)演替早期(4 a)群落高度增长较快,之后继续保持较快增长,至17 a时趋于稳定,之后增长速度缓慢。(3)4 a和17 a的群落立木级均分布在Ⅱ级—Ⅳ级,56 a和73 a的群落立木均达到最高级Ⅴ级,该两群落立木在Ⅱ级—Ⅴ级均有分布。(4)随着演替的进展,除了73 a群落盖度较56 a群落稍有下降外,其它演替群落盖度逐渐增加;群落胸高断面积表现出与盖度一致的变化趋势;群落个体密度则逐渐下降;群落物种多样性和均匀度不断提高,群落优势度则逐渐下降;群落相似性系数的变化表明在演替过程中群落物种组成结构没有发生明显变化。(5)群落变化及演替为:秋茄+桐花树群落→秋茄群落→白骨壤+秋茄群落→白骨壤群落。     

Deep-rooted vegetation, Amazonian deforestation, and climate: results from a modelling study

The depth of the root system controls the maximum amount of soil water that can be transpired by the vegetation into the atmosphere during dry periods. Water uptake from deep soil layers has been found to contribute significantly to the dry season transpiration at some sites in Amazonia and it has been estimated that large parts of the evergreen forests in Amazonia depend on deep roots to survive the dry season. Thus, the presence of deep roots might provide a significant source of atmospheric moisture during the dry season, and one which would be affected by deforestation. We investigate the role of deep-rooted vegetation and its removal in the context of Amazonian deforestation using an atmospheric General Circulation Model (GCM). A distribution of deep roots is obtained by a numerical optimization approach. The simulated climate with the use of the calculated deep roots substantially improves the seasonal characteristics of the GCM. Three additional simulations are then conducted in order to isolate the effect of rooting depth reduction from other parameter changes associated with large-scale deforestation. Most of the climatic effects occur during the dry season and are attributed to the reduction of rooting depth. Dry periods are found to last longer, being more intense with drier and warmer air, while the wet season remains fairly unchanged. The implications of these climatic effects for the re-establishment of the natural evergreen forest are discussed.     

Identification of larval fish in mangrove areas of Peninsular Malaysia using morphology and DNA barcoding methods

The identification of larval fish has been an important morphological issue in marine biology due to the dramatic transformations that most species undergo from early larval stages to adulthood. Insufficient morphological diagnostic characters in larval fishes made it easy to misidentify them and a difficult process to key to genus and species level. The experiment aims to find out, by applying DNA barcoding, how consistent the morphological identifications can be among larval fish. Larval fish were mainly collected using plankton nets around mangrove areas in Pendas (Johor), Setiu (Terengganu), Pekan (Pahang) and Matang (Perak) Malaysia between April 2015 and October 2015. A total of 354 samples were morphologically identified, mostly to the family level and a few to the genus level. Larval fish ranged from 1.5 mm to 31 mm of total length, with the most abundant individuals being <3 mm. Among them, a total of 177 individuals were selected for DNA barcoding analyses. Molecular works involved polymerase chain reaction (PCR) and sequencing of mitochondrial Cytochrome c Oxidase I (COI) gene fragment (655 base pairs) methods. DNA barcoding enabled all samples to be identified down to species level. The overall genetic identities ranged from 91% to 100%. Morphological identification classified the specimens into 19 families and 11 genera while DNA barcoding identified them into 19 families 33 genera and 40 species. A comparison between the two methods showed a mismatched identification of 42.6% where the accuracy percentage for morphological identification was moderate for the family level (67.8%) but was low for genus level identification (30%). The DNA barcoding method also managed to successfully identify 86.4% of the samples up to their species level where morphological method has failed to do so. The most misidentified families in the study were Blenniidae, Sparidae, Apogonidae Ambassidae and Monachantidae while almost all samples from the family Gobiidae and Engraulidae were correctly identified to family level because of their distinct morphology. In conclusion, taxonomic studies of larval fish should continue using combination of both morphology and DNA barcoding methods. Morphological identification should be more conservative i.e., when in doubt, it is better to key only to family and not to the genus and species level. DNA barcoding is a better method for deeper taxonomic levels identification with the existence of robust sequence reference libraries and should be able to validate the accuracy of traditional larval fish identification.     

Developing risk models for multicenter data using standard logistic regression produced suboptimal predictions: A simulation study

Although multicenter data are common, many prediction model studies ignore this during model development. The objective of this study is to evaluate the predictive performance of regression methods for developing clinical risk prediction models using multicenter data, and provide guidelines for practice. We compared the predictive performance of standard logistic regression, generalized estimating equations, random intercept logistic regression, and fixed effects logistic regression. First, we presented a case study on the diagnosis of ovarian cancer. Subsequently, a simulation study investigated the performance of the different models as a function of the amount of clustering, development sample size, distribution of center-specific intercepts, the presence of a center-predictor interaction, and the presence of a dependency between center effects and predictors. The results showed that when sample sizes were sufficiently large, conditional models yielded calibrated predictions, whereas marginal models yielded miscalibrated predictions. Small sample sizes led to overfitting and unreliable predictions. This miscalibration was worse with more heavily clustered data. Calibration of random intercept logistic regression was better than that of standard logistic regression even when center-specific intercepts were not normally distributed, a center-predictor interaction was present, center effects and predictors were dependent, or when the model was applied in a new center. Therefore, to make reliable predictions in a specific center, we recommend random intercept logistic regression.     

Flowering patterns in three neotropical mangrove species: Evidence from a Caribbean island

The present study sought to identify the factors that drive flowering in the main neotropical mangrove species. We evaluated the effects of water regime variables and foliar meristematic activity on the flowering intensity of Rhizophora mangle, Laguncularia racemosa, and Avicennia germinans in three physiographic types of San Andres Island, Colombia. The results show that pore salinity regulates flowering intensity and periodicity in all three mangrove species. All species flowering showed significant correlations with water balance and air vapor pressure deficit (VPD). In the fringe and interior mangroves, R. mangle flowering was explained linearly by salinity (25%) and monthly change in salinity (47%), respectively. L. racemosa flowering was linked with stronger periods of foliar meristematic activity and occurred during months of relatively high water balance (54-233 mm) and low VPD (1.18-1.29 kPa). The flowering of A. germinans was triggered by water deficit conditions when the monthly pore salinity increased over 30 g L⁻¹ and, with a month delay response, when the water column height (WCH) was below ground. The flowering of A. germinans was also explained by these variables at 65% and 39%, respectively. The flowering patterns of the studied mangrove species indicate that reproduction within the neotropical mangrove community depends on seasonally contrasting water conditions on an annual basis.     

Diversity of methanogenic archaea in a mangrove sediment and isolation of a new Methanococcoides strain

Mangrove forest sediments produce significant amounts of methane, but the diversity of methanogenic archaea is not well known at present. Therefore, 16S rRNA gene libraries were made using archaea-specific primers and DNA extracted directly from Tanzanian mangrove sediment samples as a template. Analysis of sequence data showed phylotypes closely related to cultivated methylotrophic methanogenic archaea from the marine environment, or distantly related to acetoclastic and hydrogenotrophic methanogenic archaea. In an attempt to isolate relevant methanogenic archaea, we succeeded in obtaining a new mesophilic methylotrophic methanogenic archaeon (strain MM1) capable of utilizing methanol and methylated amines as the only substrates. Under optimum conditions, the cells of strain MM1 exhibited a high specific growth rate (μ) of 0.21±0.03 (i.e. doubling time of 3.2 h) on both methanol and trimethylamine. The 16S rRNA gene sequence of strain MM1 clustered with five environmental clones, indicating that MM1 is an important methanogenic methylotroph in mangrove sediments. Based on physiological and phylogenetic analyses, strain MM1 is proposed to be included in the species of Methanococcoides methylutens .