Lignin decomposition is sustained under fluctuating redox conditions in humid tropical forest soils

Lignin mineralization represents a critical flux in the terrestrial carbon (C) cycle, yet little is known about mechanisms and environmental factors controlling lignin breakdown in mineral soils. Hypoxia is thought to suppress lignin decomposition, yet potential effects of oxygen (O₂) variability in surface soils have not been explored. Here, we tested the impact of redox fluctuations on lignin breakdown in humid tropical forest soils during ten‐week laboratory incubations. We used synthetic lignins labeled with ¹³C in either of two positions (aromatic methoxyl or propyl side chain C_β) to provide highly sensitive and specific measures of lignin mineralization seldom employed in soils. Four‐day redox fluctuations increased the percent contribution of methoxyl C to soil respiration relative to static aerobic conditions, and cumulative methoxyl‐C mineralization was statistically equivalent under static aerobic and fluctuating redox conditions despite lower soil respiration in the latter treatment. Contributions of the less labile lignin C_β to soil respiration were equivalent in the static aerobic and fluctuating redox treatments during periods of O₂ exposure, and tended to decline during periods of O₂ limitation, resulting in lower cumulative C_β mineralization in the fluctuating treatment relative to the static aerobic treatment. However, cumulative mineralization of both the C_β‐ and methoxyl‐labeled lignins nearly doubled in the fluctuating treatment relative to the static aerobic treatment when total lignin mineralization was normalized to total O₂ exposure. Oxygen fluctuations are thought to be suboptimal for canonical lignin‐degrading microorganisms. However, O₂ fluctuations drove substantial Fe reduction and oxidation, and reactive oxygen species generated during abiotic Fe oxidation might explain the elevated contribution of lignin to C mineralization. Iron redox cycling provides a potential mechanism for lignin depletion in soil organic matter. Couplings between soil moisture, redox fluctuations, and lignin breakdown provide a potential link between climate variability and the biochemical composition of soil organic matter.     

Oxygen effects on methane production and oxidation in humid tropical forest soils

We investigated the effects of oxygen (O₂) concentration on methane (CH₄) production and oxidation in two humid tropical forests that differ in long‐term, time‐averaged soil O₂ concentrations. We identified sources and sinks of CH₄ through the analysis of soil gas concentrations, surface emissions, and carbon isotope measurements. Isotope mass balance models were used to calculate the fraction of CH₄ oxidized in situ. Complementary laboratory experiments were conducted to determine the effects of O₂ concentration on gross and net rates of methanogenesis. Field and laboratory experiments indicated that high levels of CH₄ production occurred in soils that contained between 9±1.1% and 19±0.2% O₂. For example, we observed CH₄ concentrations in excess of 3% in soils with 9±1.1% O₂. CH₄ emissions from the lower O₂ sites were high (22–101 nmol CH₄ m^?2 s^?1), and were equal in magnitude to CH₄ emissions from natural wetlands. During peak periods of CH₄ efflux, carbon dioxide (CO₂) emissions became enriched in ¹³C because of high methanogenic activity. Gross CH₄ production was probably greater than flux measurements indicated, as isotope mass balance calculations suggested that 48–78% of the CH₄ produced was oxidized prior to atmospheric egress. O₂ availability influenced CH₄ oxidation more strongly than methanogenesis. Gross CH₄ production was relatively insensitive to O₂ concentrations in laboratory experiments. In contrast, methanotrophic bacteria oxidized a greater fraction of total CH₄ production with increasing O₂ concentration, shifting the δ¹³C composition of CH₄ to values that were more positive. Isotopic measurements suggested that CO₂ was an important source of carbon for methanogenesis in humid forests. The δ¹³C value of methanogenesis was between ?84‰ and ?98‰, which is well within the range of CH₄ produced from CO₂ reduction, and considerably more depleted in ¹³C than CH₄ formed from acetate.     

Land use change and the global carbon cycle: the role of tropical soils

Millions of hectares of tropical forest are cleared annually for agriculture, pasture, shifting cultivation and timber. One result of these changes in land use is the release of CO₂ from the cleared vegetation and soils. Although there is uncertainty as to the size of this release, it appears to be a major source of atmospheric CO₂, second only to the release from the combustion of fossil fuels. This study estimates the release of CO₂ from tropical soils using a computer model that simulates land use change in the tropics and data on (1) the carbon content of forest soils before clearing; (2) the changes in the carbon content under the various types of land use; and (3) the area of forest converted to each use. It appears that the clearing and use of tropical soils affects their carbon content to a depth of about 40 cm. Soils of tropical closed forests contain approximately 6.7 kg C · m^-2; soils of tropical open forests contain approximately 5.2 kg C · m^-2 to this depth. The cultivation of tropical soils reduces their carbon content by 40% 5 yr after clearing; the use of these soils for pasture reduces it by about 20%. Logging in tropical forests appears to have little effect on soil carbon. The carbon content of soils used by shifting cultivators returns to the level found under primary forest about 35 yr after abandonment. The estimated net release of carbon from tropical soils due to land use change was 0.11–0.26 × 10¹⁵ g in 1980.     

Transplantation of organic surface horizons of boreal soils into warmer regions alters microbiology but not the temperature sensitivity of decomposition

Changes in soil carbon, the largest terrestrial carbon pool, are critical for the global carbon cycle, atmospheric CO₂ levels and climate. Climate warming is predicted to be most pronounced in the northern regions and therefore the large soil carbon pool residing in boreal forests will be subject to larger global warming impact than soil carbon pools in the temperate or the tropical forest. A major uncertainty in current estimates of the terrestrial carbon balance is related to decomposition of soil organic matter (SOM). We hypothesized that when soils are exposed to warmer climate the structure of the ground vegetation will change much more rapidly than the dominant tree species. This change will alter the quality and amount of litter input to the soil and induce changes in microbial communities, thus possibly altering the temperature sensitivity of SOM decomposition. We transferred organic surface soil sections from the northern borders of the boreal forest zone to corresponding forest sites in the southern borders of the boreal forest zone and studied the effects of warmer climate after an adaptation period of 2 years. The results showed that initially ground vegetation and soil microbial community structure and community functions were different in northern and southern forest sites and that 2 years of exposure to warmer climate was long enough to cause changes in these ecological indicators. The rate of SOM decomposition was approximately equally sensitive to temperature irrespective of changes in vegetation or microbial communities in the studied forest sites. However, as temperature sensitivity of the decomposition increases with decreasing temperature regime, the proportional increase in the decomposition rate in northern latitudes could lead to significant carbon losses from the soils.     

Sorption of dissolved organic matter by mineral soils of the Siberian forest tundra

Because of low net production in arctic and subarctic surface water, dissolved organic matter (DOM) discharged from terrestrial settings plays an important role for carbon and nitrogen dynamics in arctic aquatic systems. Sorption, typically controlling the export of DOM from soil, may be influenced by the permafrost regime. To confirm the potential sorptive control on the release of DOM from permafrost soils in central northern Siberia, we examined the sorption of DOM by mineral soils of Gelisols and Inceptisols with varying depth of the active layer. Water‐soluble organic matter in the O horizons of the Gelisols was less (338 and 407 mg C kg^?1) and comprised more dissolved organic carbon (DOC) in the hydrophobic fraction (HoDOC) (63% and 70%) than in the O horizons of the Inceptisols (686 and 706 mg C kg^?1, 45% and 48% HoDOC). All A and B horizons from Gelisols sorbed DOC strongly, with a preference for HoDOC. Almost all horizons of the Inceptisols showed a weaker sorption of DOC than those of the Gelisols. The C horizons of the Inceptisols, having a weak overall DOC sorption, sorbed C in the hydrophilic fraction (HiDOC) stronger than HoDOC. The reason for the poor overall sorption and also the preferential sorption of HiDOC is likely the high pH (pH>7.0) of the C horizons and the smaller concentrations of iron oxides. For all soils, the sorption of HoDOC related positively to oxalate‐ and dithionite–citrate‐extractable iron. The A horizons released large amounts of DOC with 46–80% of HiDOC. The released DOC was significantly (r=0.78, P<0.05) correlated with the contents of soil organic carbon. From these results, we assume that large concentrations of DOM comprising large shares of HiDOC can pass mineral soils where the active layer is thin (i.e. in Gelisols), and enter streams. Soils with deep active layer (i.e. Inceptisols), may release little DOM because of more frequent infiltration of DOM into their thick mineral horizons despite their smaller contents of reactive, poorly crystalline minerals. The results obtained for the Inceptisols are in agreement with the situation observed for streams connecting to Yenisei at lower latitudes than 65°50′ with continuous to discontinuous permafrost. The smaller sorption of DOM by the Gelisols is in agreement with the larger DOM concentrations in more northern catchments. However, the Gelisols preferentially retained the HoDOC which dominates the DOC in streams towards north. This discrepancy can be explained by additional seepage water from the organic horizons that is discharged into streams without intensive contact with the mineral soil.     

Biochar stimulates the decomposition of simple organic matter and suppresses the decomposition of complex organic matter in a sandy loam soil

Incorporating crop residues and biochar has received increasing attention as tools to mitigate atmospheric carbon dioxide (CO₂) emissions and promote soil carbon (C) sequestration. However, direct comparisons between biochar, torrefied biomass, and straw on both labile and recalcitrant soil organic matter (SOM) remain poorly understood. In this study, we explored the impact of biochars produced at different temperatures and torrefied biomass on the simple C substrates (glucose, amino acids), plant residues (Lolium perenne L.), and native SOM breakdown in soil using a ¹⁴C labeling approach. Torrefied biomass and biochars produced from wheat straw at four contrasting pyrolysis temperatures (250, 350, 450, and 550 °C) were incorporated into a sandy loam soil and their impact on C turnover compared to an unamended soil or one amended with unprocessed straw. Biochar, torrefied biomass, and straw application induced a shift in the soil microbial community size, activity, and structure with the greatest effects in the straw‐amended soil. In addition, they also resulted in changes in microbial carbon use efficiency (CUE) leading to more substrate C being partitioned into catabolic processes. While overall the biochar, torrefied biomass, and straw addition increased soil respiration, it reduced the turnover rate of the simple C substrates, plant residues, and native SOM and had no appreciable effect on the turnover rate of the microbial biomass. The negative SOM priming was positively correlated with biochar production temperature. We therefore ascribe the increase in soil CO₂ efflux to biochar‐derived C rather than that originating from SOM. In conclusion, the SOM priming magnitude is strongly influenced by both the soil organic C quality and the biochar properties. In comparison with straw, biochar has the greatest potential to promote soil C storage. However, straw and torrefied biomass may have other cobenefits which may make them more suitable as a CO₂ abatement strategy.     

森林类型对土壤有机质、微生物生物量及酶活性的影响

以澳大利亚南昆士兰州典型森林类型——湿地松、南洋杉和贝壳杉林为对象,开展土壤可溶性有机碳和氮(SOC和SON)、微生物生物量碳和氮(MBC和MBN),以及土壤酶活性的研究,剖析森林类型对土壤质量的影响.结果表明:不同林型土壤SOC、SON含量分别在552 ～1154 mg·kg-1和20.11～57.32mg·kg-1;MBC、MBN分别在42～149 mg·kg-1和7～35 mg·kg-1.MBC、MBN之间呈显著相关.土壤几丁质酶、酸性磷酸酶、碱性磷酸酶和β-葡萄糖苷酶的活性分别为2.96 ～7.63、16.5 ～29.6、0.79 ～ 3.42和3.71 ～9.93 μg ·g-1·h-1,亮氨酸氨肽酶活性为0.18～0.46 μg·g-1·d-1.不同林型土壤SOC含量,以及土壤几丁质酶和亮氨酸氨肽酶活性为湿地松林、南洋杉林、贝壳杉林依次降低;而SON含量为南洋杉林＞贝壳杉林＞湿地松林,且南洋杉林的SON含量显著(P＜0.05)高于湿地松林;MBC和MBN以及碱性磷酸酶活性为贝壳杉林＞湿地松林＞南洋杉林;酸性磷酸酶和β-葡萄糖苷酶活性为湿地松林＞贝壳杉林＞南洋杉林.在土壤生物代谢因子中,MBC、MBN、SON和亮氨酸氨肽酶对不同森林类型土壤影响较大.     

Quantitative aspects of heterogeneity in soil organic matter dynamics in a cool-temperate Japanese beech forest: a radiocarbon-based approach

Soil is the largest carbon reservoir in terrestrial ecosystems; it stores twice as much carbon as the atmosphere. It is well documented that global warming can lead to accelerated microbial decomposition of soil organic carbon (SOC) and enhance the release of CO₂ from the soil to the atmosphere; however, the magnitude and timing of this effect remain highly uncertain due to a lack of quantitative data concerning the heterogeneity of SOC biodegradability. Therefore, we sought to identify SOC pools with respect to their specific mean residence times (MRTs), to use those SOC pools to partition soil respiration sources, and to estimate the potential response of the pools to warming. We collected surface soil and litter samples from a cool-temperate deciduous forest in Japan, chemically separated the samples into SOC fractions, estimated their MRTs based on radiocarbon (¹⁴C) isotope measurements, and used the data to construct a model representing the soil as a complex of six SOC pools with different MRT ranges. We estimate that a minor, fast-cycling SOC pool with an MRT of less than 10 years (corresponding to the O horizon and recognizable plant leaf fragments in the A1 horizon) is responsible for 73% of annual heterotrophic respiration and 44% of total soil respiration. However, the predicted response of these pools to warming demonstrates that the rate of SOC loss from the fast-cycling SOC pool diminishes quickly (within several decades) because of limited substrate availability. In contrast, warming will continue to accelerate SOC loss from slow-cycling pools with MRTs of 20–200 years over the next century. Although using a ¹⁴C-based approach has drawbacks, these estimates provide quantitative insights into the potential importance of slow-cycling SOC dynamics for the prediction of positive feedback to climate change.     

Different responses of soil respiration to environmental factors across forest stages in a Southeast Asian forest

Soil respiration (SR) in forests contributes significant carbon dioxide emissions from terrestrial ecosystems and is highly sensitive to environmental changes, including soil temperature, soil moisture, microbial community, surface litter, and vegetation type. Indeed, a small change in SR may have large impacts on the global carbon balance, further influencing feedbacks to climate change. Thus, detailed characterization of SR responses to changes in environmental conditions is needed to accurately estimate carbon dioxide emissions from forest ecosystems. However, data for such analyses are still limited, especially in tropical forests of Southeast Asia where various stages of forest succession exist due to previous land‐use changes. In this study, we measured SR and some environmental factors including soil temperature (ST), soil moisture (SM), and organic matter content (OM) in three successional tropical forests in both wet and dry periods. We also analyzed the relationships between SR and these environmental variables. Results showed that SR was higher in the wet period and in older forests. Although no response of SR to ST was found in younger forest stages, SR of the old‐growth forest significantly responded to ST, plausibly due to the nonuniform forest structure, including gaps, that resulted in a wide range of ST. Across forest stages, SM was the limiting factor for SR in the wet period, whereas SR significantly varied with OM in the dry period. Overall, our results indicated that the responses of SR to environmental factors varied temporally and across forest succession. Nevertheless, these findings are still preliminary and call for detailed investigations on SR and its variations with environmental factors in Southeast Asian tropical forests where patches of successional stages dominate.     

森林土壤有机碳分解对模拟增温的响应

由化石燃料燃烧和土地利用变化引起的全球气候变暖是地球上最严重的人为干扰之一,对陆地生态系统结构和功能产生重要的影响。土壤有机碳（SOC）是陆地生态系统最大的碳库,其微小变化都会影响全球碳平衡和气候变化。近30年来,国内外学者在不同森林生态系统相继开展了野外模拟增温对SOC分解的影响及其调控机制研究。基于在全球建立的26个野外模拟气候变暖实验平台,系统分析增温对森林生态系统SOC分解的影响格局和潜在机制,发现增温通常促进森林SOC的分解,对气候变暖产生正反馈作用。然而,因增温方式和持续时间、土壤微生物群落结构和功能的多样性、SOC结构和组成的复杂性、植物-土壤-微生物之间相互作用以及森林类型等不同而存在差异,导致人们对森林SOC分解响应气候变暖的程度及时空格局变化缺乏统一的认识,且各类生物和非生物因子的相对贡献尚不清楚。基于已有研究,从土壤微生物群落结构和功能、有机碳组分以及植物-土壤-微生物互作3个方面构建了气候变暖影响SOC分解的概念框架,并进一步阐述了今后的重点研究方向,以期深入理解森林生态系统碳-气候反馈效应,为制定森林生态系统管理措施和实现"碳中和"提供科学依据。1）加强模拟增温对不同森林生态系统（特别是热带亚热带森林生态系统） SOC分解的长期观测研究,查明SOC分解的时空动态特征;2）加强土壤微生物功能群与SOC分解之间关系的研究,揭示SOC分解对增温响应的微生物学机制;3）形成统一的SOC组分研究方法,揭示不同碳组分对增温的响应特征和机制;4）加强森林生态系统植物-土壤-微生物间相互作用对模拟增温的响应及其对SOC分解调控的研究;5）加强模拟增温与其他全球变化因子（例如降水格局变化、土地利用变化、大气氮沉降）对SOC分解的交互作用,为更好评估未来全球变化背景下森林土壤碳动态及碳汇功能的维持提供理论基础。     

Water-soluble organic matter in forest soils

By applying a modified gel permeation technique, the molecular-size distribution (MSD) and complexing properties of water-soluble organic matter (WSOM), isolated from the A_h horizon under stands with either Douglas-fir, European beech or Scots pine were established. Both with respect to MSD and complexing properties, the dissolved organic matter was highly similar. WSOM was comprised of compounds apparently high in molecular weight (>1 kDa) and with a complexing capacity of 1.0±0.1 mol mg^–1 carbon as determined for Cu(II) at pH 5.5 and 0.01 M ionic strength. The effect of WSOM on the partitioning of cations between soil solid phase and soil solution was evaluated in several soil batch experiments using loamy sand or sandy soil material. Although a large part of WSOM was sorbed to the soil matrix, Al, Cu, Fe and Pb were solubilized in considerable amounts by complexation. The Mn concentration in the soil solution was also significantly increased but this probably resulted from a redox reaction, with certain constituents of WSOM serving as electron donor. With a decrease in soil pH, cation mobilization by WSOM was significantly lower as a result of increased sorption and a decrease in complexing capacity of the soluble organics. Application of several low MW aliphatic and phenolic acids gave results similar to the results obtained with WSOM.     

Management of tropical soils as sinks or sources of atmospheric carbon

The prevailing paradigm for anticipating changes in soil organic carbon (SOC) with changes in land use postulates reductions in SOC in managed systems (agriculture and tree plantations) relative to mature tropical forests. Variations of this notion are used in carbon models to predict the role of tropical soils in the global carbon cycle. Invariably these models show tropical soils as sources of atmospheric carbon. We present data from a variety of studies that show that SOC in managed systems can be lower, the same as, or greater than mature tropical forests and that SOC can increase rapidly after the abandonment of agricultural fields. History of land use affects the comparison of SOC in managed and natural ecosystems. Our review of the literature also highlights the need for greater precautions when comparing SOC in mature tropical forests with that of managed ecosystems. Information on previous land use, bulk density, and consistency in sampling depth are some of the most common omissions in published studies. From comparable SOC data from a variety of tropical land uses we estimate that tropical soils can accumulate between 168 and 553 Tg C/yr. The greatest potential for carbon sequestration in tropical soils is in the forest fallows which cover some 250 million hectares. Increased attention to SOC by land managers can result in greater rates of carbon sequestration than predicted by current SOC models.     

Nitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments

Salt marshes sequester carbon at rates more than an order of magnitude greater than their terrestrial counterparts, helping to mitigate climate change. As nitrogen loading to coastal waters continues, primarily in the form of nitrate, it is unclear what effect it will have on carbon storage capacity of these highly productive systems. This uncertainty is largely driven by the dual role nitrate can play in biological processes, where it can serve as a nutrient‐stimulating primary production or a thermodynamically favorable electron acceptor fueling heterotrophic metabolism. Here, we used a controlled flow‐through reactor experiment to test the role of nitrate as an electron acceptor, and its effect on organic matter decomposition and the associated microbial community in salt marsh sediments. Organic matter decomposition significantly increased in response to nitrate, even at sediment depths typically considered resistant to decomposition. The use of isotope tracers suggests that this pattern was largely driven by stimulated denitrification. Nitrate addition also significantly altered the microbial community and decreased alpha diversity, selecting for taxa belonging to groups known to reduce nitrate and oxidize more complex forms of organic matter. Fourier Transform‐Infrared Spectroscopy further supported these results, suggesting that nitrate facilitated decomposition of complex organic matter compounds into more bioavailable forms. Taken together, these results suggest the existence of organic matter pools that only become accessible with nitrate and would otherwise remain stabilized in the sediment. The existence of such pools could have important implications for carbon storage, since greater decomposition rates as N loading increases may result in less overall burial of organic‐rich sediment. Given the extent of nitrogen loading along our coastlines, it is imperative that we better understand the resilience of salt marsh systems to nutrient enrichment, especially if we hope to rely on salt marshes, and other blue carbon systems, for long‐term carbon storage.     

土壤细菌呼吸对西双版纳热带森林恢复的响应

揭示不同恢复阶段热带森林土壤细菌呼吸季节变化及其主控因素,对于探明土壤细菌呼吸对热带森林恢复的响应机制具有重要的科学意义。以西双版纳不同恢复阶段热带森林(白背桐群落、崖豆藤群落和高檐蒲桃群落)为研究对象,运用真菌呼吸抑制法及高通量宏基因组测序技术分别测定土壤细菌呼吸速率和细菌多样性,并采用回归分析及结构方程模型揭示热带森林恢复过程中土壤细菌多样性、pH、土壤碳氮组分变化对土壤细菌呼吸速率的影响特征。结果表明：1)不同恢复阶段热带森林土壤细菌呼吸速率表现为：高檐蒲桃群落((1.51±0.62)CO₂ mg g^-1 h^-1)显著高于崖豆藤群落((1.16±0.56)CO₂ mg g^-1 h^-1)和白背桐群落((0.82±0.60)CO₂ mg g^-1 h^-1)(P<0.05)。2)不同恢复阶段土壤细菌呼吸速率呈显著的单峰型季节变化(P<0.05),最大值均出现在9月：高檐蒲桃群落((...     

Effects of substrate availability on the temperature sensitivity of soil organic matter decomposition

Soil carbon is a major component in the global carbon cycle. Understanding the relationship between environmental changes and rates of soil respiration is critical for projecting changes in soil carbon fluxes in a changing climate. Although significant attention has been focused on the temperature sensitivity of soil organic matter decomposition, the factors that affect this temperature sensitivity are still debated. In this study, we examined the effects of substrate availability on the temperature sensitivity of soil respiration in several different kinds of soils. We found that increased substrate availability had a significant positive effect on temperature sensitivity, as measured by soil Q ₁₀ values, and that this effect was inversely proportional to original substrate availability. This observation can be explained if decomposition follows Michaelis–Menten kinetics. The simple Q ₁₀ model was most appropriate in soils with high substrate availability.     

Carbon sequestration rates in organic layers of boreal and temperate forest soils — Sweden as a case study

Aim The aim of this work was to estimate C sequestration rates in the organic matter layer in Swedish forests. Location The region encompassed the forested area (23 × 10⁶ ha) of Sweden ranging from about 55° N to 69° N. Methods We used the concept of limit values to estimate recalcitrant litter remains, and combined it with amount of litter fall. Four groups of tree species were identified (pine, spruce, birch and ‘other deciduous species’). Annual actual evapotranspiration (AET) was estimated for 5 × 5 km grids covering Sweden. For each grid, data of forested area and main species composition were available. The annual input of foliar litter into each grid was calculated using empirical relationships between AET and foliar litter fall in the four groups. Litter input was combined with average limit values for decomposition for the four groups of litter, based on empirical data. Finally, C sequestration rate was calculated using a constant factor of the C concentration in the litter decomposed to the limit value, thus forming soil organic matter (SOM). Results We obtained a value of 4.8 × 10⁶ metric tons of C annually sequestered in SOM in soils of mature forests in Sweden, with an average of 180 kg ha^?1 and a range from 40 to 410 kg ha^?1. Norway spruce forests accumulated annually an average of 200 kg C ha^?1. The pine and birch groups had an average of 150 kg ha^?1 and for the group of other deciduous trees, which is limited to south Sweden, the C sequestration was around 400 kg ha^?1. Conclusions There is a clear C sequestration gradient over Sweden with the highest C sequestration in the south‐west, mainly corresponding to the gradient in litter fall. The limit‐value method appears useful for scaling up to a regional level to describe the C sequestration in SOM. A development of the limit value approach in combination with process‐orientated dynamic models may have a predictive value.     

Substantial labile carbon stocks and microbial activity in deeply weathered soils below a tropical wet forest

Contrary to large areas in Amazonia of tropical moist forests with a pronounced dry season, tropical wet forests in Costa Rica do not depend on deep roots to maintain an evergreen forest canopy through the year. At our Costa Rican tropical wet forest sites, we found a large carbon stock in the subsoil of deeply weathered Oxisols, even though only 0.04–0.2% of the measured root biomass (>2 mm diameter) to 3 m depth was below 2 m. In addition, we demonstrate that 20% or more of this deep soil carbon (depending on soil type) can be mobilized after forest clearing for pasture establishment. Microbial activity between 0.3 and 3 m depth contributed about 50% to the microbial activity in these soils, confirming the importance of the subsoil in C cycling. Depending on soil type, forest clearing for pasture establishment led from no change to a slight addition of carbon in the topsoil (0–0.3 m depth). However, this effect was countered by a substantial loss of C stocks in the subsoil (1–3 m depth). Our results show that large stocks of relatively labile carbon are not limited to areas with a prolonged dry season, but can also be found in deeply weathered soils below tropical wet forests. Forest clearing in such areas may produce unexpectedly high C losses from the subsoil.     

Dynamics of organic matter in soils

Summary Dynamics of C, N, S, and to some extent P are expressed by a knowledge of the size and turnover rates of plant constituents such as soluble C and N components, cellulose and hemicellulose, and lignin. Soil organic matter constituents include: the microbial biomass as determined chemically or microscopically, non-biomass active components determined by isotopic dilution, stabilized N constituents for which good techniques are not yet available, and resistant or old C and associated N determined by carbon dating. The processes involved in the nutrient transformations and transfers are reasonably well understood. The control mechanisms require further elucidation to be able to extrapolate from the laboratory to the field, and between field sites. Major control mechanisms requiring further insight include the effects of C availability on transformations of C and N. The other control for which every little is known is that of spatial compartmentalization. Compartmentalization ranges from landscape or management sequences to pedogenic layers, rhizosphere-mycorrhizal effects, clay-sesquioxide surfaces, aggregation, localized enzymes, and microbial effects such as membrane boundaries. Control mechanisms for concurrent mineralization-immobilization, the stabilization of microbial products, and the relative role of the biomass as a catalyst rather than as a source-sink for nutrients, must be understood. There is potential for combining a knowledge of microbial production and turnover with that of the roles of the soil organic active fraction as a temporary storehouse for nutrients. This, in conjunction with management techniques such as zero tillage and crop rotation, should make it possible to better utilize soil and fertilizer N, especially in areas of the world where the cost of nutrients is high relative to the value of the crop grown.Introductory lecture     

Retention of particulate organic matter in a tropical headstream

Retention of particulate organic matter was investigated over a range of water discharges in pool and riffle zones of a tropical stream (Itaúna Stream, São Paulo, Brazil). A closed-system leaf release and capture method was used to quantify leaf retention in a 50-m reach of the stream. Instantaneous retention rates (k) were calculated by a negative exponential model and specific retention rates (k _e) computed for each 1m interval. The mean k was 0.0161±0.0101 (S.E.) and ranged from 0.005 to 0.036 during the study period. This suggests a low retention of particulate matter. The evidence provided by this study shows that there was a relationship between retention and discharge. At low discharges, greater percentages of leaves were retained in a 3-h period while high discharges resulted in low retention percentages within the studied reach. In the Itaúna Stream, no significant difference (p<0.05) was found between the k _e values of pool and riffle zones.