Molecular pharming in cereal crops

There are many different agricultural expression systems that can be used for the large-scale production of recombinant proteins, but field-grown cereal crops are among the most attractive because recombinant proteins can be targeted to accumulate in the seed, and specifically in the endosperm, which has evolved naturally as a protein storage tissue. Within the developing endosperm, proteins are supplied with molecular chaperones and disulfide isomerases to facilitate folding and assembly, while the mature tissue is desiccated to prevent proteolytic degradation. Proteins expressed in cereal seeds can therefore remain stable for years in ambient conditions. Recent basic research has revealed a surprising diversity of protein targeting mechanisms in the endosperm, which can help to control post-translational modification and accumulation. Applied research and commercial development has seen several pharmaceutical proteins produced in cereals reach late stage preclinical development and the first clinical trials, with a number of companies now dedicated to developing cereal-based production platforms. In this review we discuss the basic science of molecular pharming in cereals, some of the lead product candidates, and challenges that remain to be addressed including the emerging regulatory framework for plant-made pharmaceuticals.     

Genome editing in cereal crops: an overview

Transgenic Research - Genome-editing technologies offer unprecedented opportunities for crop improvement with superior precision and speed. This review presents an analysis of the current state of...     

Distribution of aphids in cereal crops

Cereal crops were examined weekly for aphids during 1969. Plants in twenty samples of row 0.3 m long were examined in a sheltered perimeter of a crop and along a transect 36.6 m into the crop. Aphids were usually first found within 1–4 weeks of the first alatae caught in a suction trap operating 12.2 m above ground. When first alatae caught in a suction trap operating 12.2 m above ground. When the first found from 10 to 27% of the 0.3 m lengths sampled contained aphids. Rhopalosiphum padi, first found late in May, were scarce (< 0.53/0.3 m) throughout June and July. Sitobium spp. and Metapolophium dirhodum, which appeared in mid-June, were more numerous than R. padi; most occurred during the second half of July, and populations decreased just before harvest in early August. Sitobium avenae was more abundant (max. 19.3/sample) than either S. fragariae (0.91) or M. dirhodum (2.51). More aphids occurred in oats (max. 52/0.3 m) during July than in wheat (45), and barley had fewer (6.8). S. avanae was more abundant than M. dirhodum in sheltered areas of barley and wheat, and in exposed areas of the same crop M. dirhodum was commonest. Along sheltered perimeters, the ratio of S. avenae to M. dirhodum was largest in barley (11:1), intermediate in oats (6:1) and smallest in wheat (3.7:1). Sitobium spp. were most numerous on the ears, when most M. dirhodum were on the leaves. Regression analyses of log. S² on log. m suggested that S. avenae was more evenly distributed within (36.6 m) the field (b = 1.056 + 0.109) than along the sheltered perimeter (b = 1.432 + 0.132), though it seemed similarly distributed along perimeters of barley, oats and wheat. The distributions of M. dirhodum and Sitobium spp. along sheltered perimeters of all crops were apparently similar.     

Future utilization of cereal crops

Estimates made on the uses for cereals (corn, wheat, oats, barley, sorghum, rice, and rye) in 1975 are based upon a number of assumptions. If those made in this article are approached, the pattern of cereal use will be much the same as it is at present.     

Body size and the colonisation of cereal crops by the invasive slug Arion lusitanicus

The invasive slug Arion lusitanicus lives in undisturbed stands of grass or herbaceous plants from where it disperses into crops. Factors that determined the dispersal of slugs from a grassy orchard (O) into an adjacent cereal stand were investigated. Slug‐feeding activity, abundance and body weight were established along a 120 m transect across an orchard and a cereal crop. Slugs in the source population in the orchard were more abundant and lighter in 2008 than 2009. The slugs that left the orchard and moved into the cereal crop were heavier than those that remained in the orchard and the distance they travelled was positively correlated with their weight. The abundance of slugs in the cereal crop decreased with the increase in the distance from the source population, more so in 2008, when slugs were light in weight and accumulated near the edge of the orchard, than in 2009 when the slugs were heavier and distributed more evenly. The feeding activity of the slugs leaving the orchard and distance they dispersed also increased during the course of the season. Long distance dispersal is achieved by crawling, the speed of which increased with slug size. Seasonal and annual variation in body size thus affected the distribution of slugs in the cereal crop and the distance they dispersed.     

Rethinking sources of nitrogen to cereal crops

Understanding how to manage N inputs to identify the practices that maximize N recovery has been an organizing principle of agronomic research. Because growth in N fertilizer inputs is expected to continue in an ongoing effort to boost crop production over coming decades, understanding how to efficiently manage recovery of fertilizer N will be important going forward. Yet synthesis of published data that has traced the fate of ¹⁵N‐labeled fertilizer shows that less than half of the N taken up by crops is derived from current‐year N fertilizer. The source of the majority of N in crops is something other than current‐year fertilizer and the sources are not really known. This is true for maize (only 41% of N in crops was from current‐year N fertilizer), rice (32%), and small grains (37%). Recovery of organic fertilizer N (manure, green manure, compost, etc.) in crops is low (27%), though N recovery in subsequent years (10%) was greater than that for mineral fertilizers. Thus, while research on efficiency of N fertilizer use through improved rate, type, location, and timing is important, this research fails to directly address management of the majority of the N supplied to crops. It seems likely that the majority of non‐fertilizer N found in crops comes from turnover of soil and crop residue N. We encourage the research community to revisit the mental model that fertilizer is a replacement for N supply from turnover of soil organic N (SON) and consider a model in which N fertilizer augments ongoing SON turnover and makes an important longer term contribution to SON maintenance and turnover. Research focused on the efficient recovery of N current‐year fertilizer inputs neglects this potential role for building soil N and managing soil N turnover, which seems likely to be the most important source of crop N.     

The molecular genetic mapping of cereal crops

The application of modern methods of genetic mapping using RFLP and PCR technologies allowed to advance essentially in construction of rye genome genetic maps and mapping of some morphological and breeding-valuable genes. Genetic mapping of cereal genomes, such as rye, wheat, maize and rice using common set of DNA-probes permitted to reveal considerable evolutionary conservation in gene organization and localization. This allows to use more effectively method of comparative mapping for fast localization and tagging of genes in genomes of less investigated species.     

Water stress resilient cereal crops: Lessons from wild relatives

Cereal crops are significant contributors to global diets. As climate change disrupts weather patterns and wreaks havoc on crops, the need for generating stress-resilient, high-yielding varieties is more urgent than ever. One extremely promising avenue in this regard is to exploit the tremendous genetic diversity expressed by the wild ancestors of current day crop species. These crop wild relatives thrive in a range of environments and accordingly often harbor an array of traits that allow them to do so. The identification and introgression of these traits into our staple cereal crops can lessen yield losses in stressful environments. In the last decades, a surge in extreme drought and flooding events have severely impacted cereal crop production. Climate models predict a persistence of this trend, thus reinforcing the need for research on water stress resilience. Here we review: (i) how water stress (drought and flooding) impacts crop performance; and (ii) how identification of tolerance traits and mechanisms from wild relatives of the main cereal crops, that is, rice, maize, wheat, and barley, can lead to improved survival and sustained yields in these crops under water stress conditions.     

Root system architecture: insights from Arabidopsis and cereal crops

Roots are important to plants for a wide variety of processes, including nutrient and water uptake, anchoring and mechanical support, storage functions, and as the major interface between the plant and various biotic and abiotic factors in the soil environment. Understanding the development and architecture of roots holds potential for the exploitation and manipulation of root characteristics to both increase food plant yield and optimize agricultural land use. This theme issue highlights the importance of investigating specific aspects of root architecture in both the model plant Arabidopsis thaliana and (cereal) crops, presents novel insights into elements that are currently hardly addressed and provides new tools and technologies to study various aspects of root system architecture. This introduction gives a broad overview of the importance of the root system and provides a snapshot of the molecular control mechanisms associated with root branching and responses to the environment in A. thaliana and cereal crops.     

Towards molecular breeding of reproductive traits in cereal crops

The transition from vegetative to reproductive phase, flowering per se , floral organ development, panicle structure and morphology, meiosis, pollination and fertilization, cytoplasmic male sterility (CMS) and fertility restoration, and grain development are the main reproductive traits. Unlocking their genetic insights will enable plant breeders to manipulate these traits in cereal germplasm enhancement. Multiple genes or quantitative trait loci (QTLs) affecting flowering (phase transition, photoperiod and vernalization, flowering per se ), panicle morphology and grain development have been cloned, and gene expression research has provided new information about the nature of complex genetic networks involved in the expression of these traits. Molecular biology is also facilitating the identification of diverse CMS sources in hybrid breeding. Few Rf (fertility restorer) genes have been cloned in maize, rice and sorghum. DNA markers are now used to assess the genetic purity of hybrids and their parental lines, and to pyramid Rf or tms (thermosensitive male sterility) genes in rice. Transgene(s) can be used to create de novo CMS trait in cereals. The understanding of reproductive biology facilitated by functional genomics will allow a better manipulation of genes by crop breeders and their potential use across species through genetic transformation.     

Damage to cereal crops by larks in north-western Iraq

Two types of lark-caused damage occurred in cereal crops in north-western Iraq: grazing by skylarks and digging by calandra larks. The level of damage in large-scale cereal plantings was low but extensive damage, resulting in lowered grain yields, occurred in some experimental trials and made evaluation of cereal cultivars difficult. The amount of grazing varied amongst cultivars, differences being more pronounced with grazing than digging.     

Genetic engineering for enhanced biological nitrogen fixation in cereal crops

Enhancing biological nitrogen (N) fixation in cereal crops has been a long-sought objective. Recently, Yan et al. identified plant compounds that induce biofilm production of diazotrophic bacteria and then performed genetic engineering in order to improve nitrogen fixation in rice plants. These findings hold promise for sustainable agriculture.     

Seed mass versus seedling performance in Scots pine: a maternally dependent trait

It is generally accepted that larger seeds give rise to seedlings with better performance. On the other hand, the size that a seed reaches is genetically determined by at least two different traits ; the genetic variability of the developing embryo and the genetic variability of the maternal plant. Thus, the relative contributions of these two traits affect seedling performance by influencing seed size. In this paper, I investigate the effect of seed size on seedling performance in the Scots pine ( Pinus sylvestris ). From eight maternal plants, 50 seeds were planted in each of two soil types (800 seeds in total), and seedling performance was monitored for 1 yr. Seed mass proved to be highly constant within maternal plants. Soil type influenced emergence and survival; however, the effect of soil type differed depending on maternal origin. Seed mass was positively correlated with seedling emergence, although this relationship was not found for seedling survival or date of emergence. The initial growth of the shoot was also positively correlated with seed mass. However, after one growing season, seed mass had no effect on seedling performance, which depended exclusively on maternal origin. Nevertheless, the mean mass of seeds produced by plants was positively correlated with mean values of growth parameters. Thus, first-year seedling performance seems to be a maternal trait indirectly associated with seed size.     

Genetic enrichment of cereal crops via alien gene transfer: New challenges

Genetic improvement of crops has traditionally been achieved through sexual hybridization between related species, which has resulted in numerous cultivars with high yields and superior agronomic performance. Conventional plant breeding, sometimes combined with classical cytogenetic techniques, continues to be the main method of cereal crop improvement. More recently, through the introduction of new tools of biotechnology, crossing barriers have been overcome, and genes from unrelated sources have become available to be introduced asexually into plants. Cereal crops were initially difficult to genetically engineer, mainly due to their recalcitrance to in vitro regeneration and their resistance to Agrobacterium infection. Systematic screening of cultivars and explant tissues for regeneration potential, development of various DNA delivery methods and optimization of gene expression cassettes have produced transformation protocols for the major cereals, although some elite cultivars still remain recalcitrant to transformation. Most of the transgenic cereals developed for commercial purpose exhibit herbicide and/or insect resistance; traits that are often controlled by a single gene. In recent years, more complex traits, such as dough functionality in wheat and nutritional quality of rice have been improved by the use of biotechnology. The current challenges for genetic engineering of plants will be to understand and control factors causing transgene silencing, instability and rearrangement, which are often seen in transgenic plants and highly undesirable in lines to be used for crop development. Further improvement of current cereal cultivars is expected to benefit greatly from information emerging from the areas of genomics, proteomics and bioinformatics.     

Regulation, evolution, and functionality of flavonoids in cereal crops

Flavonoids are plant secondary metabolites that contribute to the adaptation of plants to environmental stresses, including resistance to abiotic and biotic stress. Flavonoids are also beneficial for human health and depress the progression of some chronic diseases. The biosynthesis of flavonoids, which belong to a large family of phenolic compounds, is a complex metabolic process with many pathways that produce different metabolites, controlled by key enzymes. There is limited knowledge about the composition, biosynthesis and regulation of flavonoids in cereals. Improved understanding of the accumulation of flavonoids in cereal grains would help to improve human nutrition through these staple foods. The biosynthesis of flavonoids, scope for altering the flavonoid composition in cereal crops and benefits for human nutrition are reviewed here.     

Comparative analysis of multiple disease resistance in ryegrass and cereal crops

Ryegrass (Lolium spp.) is among the most important forage crops in Europe and Australia and is also a popular turfgrass in North America. Previous genetic analysis based on a three-generation interspecific (L. perenne x L. multiflorum) ryegrass population identified four quantitative trait loci (QTLs) for resistance to gray leaf spot (Magneporthe grisea) and four QTLs for resistance to crown rust (Puccinia coronata). The current analysis based on the same mapping population detected seven QTLs for resistance to leaf spot (Bipolaris sorokiniana) and one QTL for resistance to stem rust (Puccinia graminis) in ryegrass for the first time. Three QTLs for leaf spot resistance on linkage groups (LGs) 2 and 4 were in regions of conserved synteny to the positions of resistance to net blotch (Drechslera teres) in barley (Hordeum vulgare). One ryegrass genomic region spanning 19 cM on LG 4, which contained three QTLs for resistance to leaf spot, gray leaf spot, and stem rust, had a syntenic relationship with a segment of rice chromosome 3, which contained QTLs for resistance to multiple diseases. However, at the genome-wide comparison based on 72 common RFLP markers between ryegrass and cereals, coincidence of QTLs for disease resistance to similar fungal pathogens was not statistically significant.     

The toxicity of aphicide residues to beneficial invertebrates in cereal crops

The toxicity of dimethoate, deltamethrin and pirimicarb residues to Bembidion lampros and Coccinella septempunctata was evaluated by confining groups of insects to winter wheat foliage and soil for 24 h at different times after treatment in the field. Flag leaf residues were found to be more toxic than first leaf residues: soil residues were the least toxic with pirimicarb showing virtually no soil toxicity. In general, dimethoate and deltamethrin showed similar levels of foliar toxicity with flag leaf toxicity on the first day after treatment being in the range 60–80% for B. lampros; deltamethrin was however, less toxic than dimethoate at ground level. Both of these products were more toxic than pirimicarb. The long-term exposure of insects, surviving the 24 h bioassays, to treated soil at different times following application resulted in further mortality and provided estimates of the maximum levels of mortality that populations of predators might suffer migrating into the crop at different times following application. Dimethoate was shown to be particularly harmful at the current recommended field application rate and reduced doses were proposed to limit the severity of the initial effects.