孑遗灌木长柄扁桃的历史分布格局及其环境驱动力

为了解历史气候变化背景下分布于中国西北干旱沙漠、半干旱沙地和山地地区的孑遗灌木植物长柄扁桃(Amygdalus pedunculata)的分布与演化, 该研究利用长柄扁桃60个自然分布点和8个环境因子, 整合GIS空间分析和最大熵模型(MaxEnt), 分析珍稀濒危保护物种长柄扁桃末次间冰期(LIG)、末次盛冰期(LGM)和当前的历史地理分布格局变化及其环境驱动力。基于各时期长柄扁桃的分布模型模拟数据及自然种群的叶绿体基因测序数据, 利用最小成本路径方法, 模拟LIG时期以来长柄扁桃可能的扩散路径。利用R语言“ggbiplot”程序包对各时期长柄扁桃适生区的历史环境变量进行主成分分析(PCA), 分析影响长柄扁桃历史分布格局变化的关键气候因子。结果表明: (1) LIG时期以来, 长柄扁桃的历史分布经历了显著收缩和末次盛冰期后的扩张, LIG至LGM时期, 分布于库布齐沙漠东部、毛乌素沙地北部、陕西北部、阴山北部、乌兰察布高原南部、浑善达克沙地的适宜分布区明显收缩; LGM时期至今, 长柄扁桃在库布齐沙漠东部、毛乌素沙地中部沿北部阴山向东, 以及浑善达克沙地西部均发生了显著扩张。3个时期长柄扁桃均在内蒙古高原中西部存在高度适宜性分布区, 包括毛乌素沙地北缘、库布齐沙漠东缘以及大青山, 这些地区很可能是长柄扁桃的冰期避难所。北部阴山和毛乌素沙地边缘是长柄扁桃种群迁移过程中重要的扩散廊道; (2) LIG至LGM时期, 气温因子: 最冷月最低气温、平均气温日较差和最热月最高气温均呈显著下降的趋势, 冷干气候对长柄扁桃的冰期分布存在较大限制, 适生区显著收缩。而LGM时期至今, 降水因子最湿月降水量和降水量季节性均显著上升, 长柄扁桃在库布齐沙漠东部、毛乌素沙地中部、阴山以及浑善达克沙地西部发生显著扩张, 降水因子也是影响当前适宜分布区的关键限制性因子。     

Last Interglacial Hominid and Associated Vertebrate Fossil Trackways in Coastal Eolianites,South Africa

Two Late Pleistocene hominid footprint sites are known in South Africa, one on the west coast (Langebaan) and the other on the southeast coast (Nahoon). Both trackways occur in calcareous eolianites and are dated to the Last Interglacial (～120 ka). The chief objective is to infer anatomical features of these early anatomically modern hominid footprint makers, about which little is known. At Nahoon, trackways of at least five species of vertebrates, including three hominid footprints, are preserved as casts. One footprint preserves excellent detail, appearing in all respects to be modern, but possibly with a deformity of the small toe. The impressions are shallow and suggest slight build. The stature of the footprint maker, as estimated from foot length (19.2 cm), is ～127 cm, considerably less than modern adult Khoi-San and was probably made by a juvenile. The step length is short relative to foot length, a consequence of walking uphill on a yielding substrate. The Langebaan trackway (preserved as natural impressions) comprises two intact prints and remnants of a third. Pronounced push up mounds flank the prints and preservation of toe impressions is poor. The foot length is 22.8 cm, indicating a stature of ～1.57 m. This falls within the range of modern adult Khoi-San, lending some support to the notion that Middle Stone Age people were of small stature. The depth of the prints and clumsy progression are suggestive of heavy build.     

Postglacial northward expansion and genetic differentiation between migratory and sedentary populations of the broad‐tailed hummingbird (Selasphorus platycercus)

Unlike other migratory hummingbirds in North America, the broad‐tailed hummingbird (Selasphorus platycercus) exhibits both long‐distance migratory behaviour in the USA and sedentary behaviour in Mexico and Guatemala. We examined the evolution of migration linked to its northward expansion using a multiperspective approach. We analysed variation in morphology, mitochondrial and nuclear DNA, estimated migration rates between migratory and sedentary populations, compared divergence times with the occurrence of Quaternary climate events and constructed species distribution models to predict where migratory and sedentary populations resided during the Last Glacial Maximum (LGM) and Last Interglacial (LIG) events. Our results are consistent with a recent northward population expansion driven by migration from southern sedentary populations. Phylogeographical analyses and population genetics methods revealed that migratory populations in the USA and sedentary populations in Mexico of the platycercus subspecies form one admixed population, and that sedentary populations from southern Mexico and Guatemala (guatemalae) undertook independent evolutionary trajectories. Species distribution modelling revealed that the species is a niche tracker and that the climate conditions associated with modern obligate migrants in the USA were not present during the LIG, which provides indirect evidence for recent migratory behaviour in broad‐tailed hummingbirds on the temporal scale of glacial cycles. The finding that platycercus hummingbirds form one genetic population and that suitable habitat for migratory populations was observed in eastern Mexico during the LIG also suggests that the conservation of overwintering sites is crucial for obligate migratory populations currently facing climate change effects.     

Prokaryotes in the WAIS Divide ice core reflect source and transport changes between Last Glacial Maximum and the early Holocene

We present the first long‐term, highly resolved prokaryotic cell concentration record obtained from a polar ice core. This record, obtained from the West Antarctic Ice Sheet (WAIS) Divide (WD) ice core, spanned from the Last Glacial Maximum (LGM) to the early Holocene (EH) and showed distinct fluctuations in prokaryotic cell concentration coincident with major climatic states. The time series also revealed a ~1,500‐year periodicity with greater amplitude during the Last Deglaciation (LDG). Higher prokaryotic cell concentration and lower variability occurred during the LGM and EH than during the LDG. A sevenfold decrease in prokaryotic cell concentration coincided with the LGM/LDG transition and the global 19 ka meltwater pulse. Statistical models revealed significant relationships between the prokaryotic cell record and tracers of both marine (sea‐salt sodium [ssNa]) and burning emissions (black carbon [BC]). Collectively, these models, together with visual observations and methanosulfidic acid (MSA) measurements, indicated that the temporal variability in concentration of airborne prokaryotic cells reflected changes in marine/sea‐ice regional environments of the WAIS. Our data revealed that variations in source and transport were the most likely processes producing the significant temporal variations in WD prokaryotic cell concentrations. This record provided strong evidence that airborne prokaryotic cell deposition differed during the LGM, LDG, and EH, and that these changes in cell densities could be explained by different environmental conditions during each of these climatic periods. Our observations provide the first ice‐core time series evidence for a prokaryotic response to long‐term climatic and environmental processes.     

Palaeoclimate and Palaeoenvironment of the Last Glacial Stage in Salawusu Area of Nei Monggol,China

Salawusu area of Nei Monggol, is the famous ruins of “Hetao man” and their culture. It is also the native haunt of Salawusu Fauna and the typical site of the late Pleistocene in northern China. By densely sampling and carefully analysing, the authors worked out a beautiful and complete pollen-spore diagram of the Salawusu section, which records in detail the proccess of the vegetational development and the climatic changes of this region since Last Glacial periode, about 60 ka B.P. Accordingly, the last glacial period may be divided into three substages: Early, middle and late substage, corresponding to the pollen-spore zones: Ⅰ,Ⅱ, and Ⅲ. Substages are divided into cold stadials and relative warmmer tnterstadials, corresponding to subzones of pollenspore zones. This scheme can be well correlated with that of other regions in China, in Europe, in America and the results of the oxygen isotopic research in deep sea, all over the world.     

Late Pleistocene divergence and postglacial expansion in the Brazilian Atlantic Forest: multilocus phylogeography of Rhopias gularis (Aves: Passeriformes)

In the last decade, phylogeographic studies have revealed a complex evolutionary history of the Brazilian Atlantic Forest (AF) biota. Here, we investigated the evolutionary history of Rhopias gularis, an endemic bird of the AF, based on sequences of two mitochondrial genes and three nuclear introns from 64 specimens from 15 localities. We addressed three main questions: (1) Does the genetic diversity of R. gularis exhibit a distribution pattern congruent with the refuge hypothesis postulated for the AF? (2) Is the population genetic structure of R. gularis congruent with those observed in other AF species? (3) What were the possible historical events responsible for the population structure of this species? Our mtDNA data revealed two phylogroups: (1) phylogroup central‐south, with samples from the central and southern parts of the range; (2) and phylogroup north, which included individuals from southern Bahia. Nevertheless, nuclear loci did not reveal any evidence of population structure. Bottleneck tests indicated that the central‐south lineage experienced demographic expansion, starting around 20 kya, which coincides with the end of the last glacial maximum. However, there was no evidence of population growth in phylogroup north. Isolation with migration analysis indicated that these phylogroups split c.a. 304 kya, with limited gene flow among them. Palaeodistribution models indicated that R. gularis had a reduced distribution in the south and central AF during the last glacial maximum. Our results support a diversification scenario that is in accordance with proposed Pleistocene refugia. The phylogeographic results from our study exhibited spatial and temporal concordances and discordances with previous studies of organisms from the AF. Differences in habitat requirements of these species could be behind this complex scenario. Future studies correlating variables of the niche of these species with the observed phylogeographic patterns may help understand why there are congruent and incongruent results.     

MICROHABITAT DIFFERENCES IMPACT PHYLOGEOGRAPHIC CONCORDANCE OF CODISTRIBUTED SPECIES: GENOMIC EVIDENCE IN MONTANE SEDGES (CAREX L.) FROM THE ROCKY MOUNTAINS

By selecting codistributed, closely related montane sedges from the Rocky Mountains that are similar in virtually all respects but one—their microhabitat affinities—we test predictions about how patterns of genetic variation are expected to differ between Carex nova, an inhabitant of wetlands, and Carex chalciolepis, an inhabitant of drier meadows, slopes, and ridges. Although contemporary populations of the taxa are similarly isolated, the distribution of glacial moraines suggests that their past population connectedness would have differed. Sampling of codistributed population pairs from different mountain ranges combined with the resolution provided by over 24,000 single nucleotide polymorphism loci supports microhabitat‐mediated differences in the sedges’ patterns of genetic variation that are consistent with their predicted differences in the degree of isolation of ancestral source populations. Our results highlight how microhabitat preferences may interact with glaciations to produce fundamental differences in the past distributions of presently codistributed species. We discuss the implications of these findings for generalizing the impacts of climate‐induced distributional shifts for communities, as well as for the prospects of gaining insights about species‐specific deterministic processes, not just deterministic community‐level responses, from comparative phylogeographic study.     

Combining ecological niche modelling and morphology to assess the range‐wide population genetic structure of bobcats (Lynx rufus)

Despite a broad distribution, general habitat requirements, and a large dispersal potential, bobcats (Lynx rufus) exhibit a genetic division that longitudinally transects central North America. We investigated (1) whether the climate of the Last Glacial Maximum (LGM; 21 kya) isolated bobcats into refugia and also whether the current climate influences gene flow between the segregate populations and (2) whether the geographical patterns in cranial morphology reflect population identity. We created ecological niche models (ENMs) to evaluate climatic suitability and to estimate distributions of the disparate populations under both historical (LGM) and contemporary conditions. We used two‐dimensional geometric morphometric methods to evaluate variations in the cranium and mandible. These variations were then regressed across geographical variables to assess morphological differences throughout the range of the bobcat. ENMs projected onto LGM climate provided evidence of refugia during the LGM via increased suitability in the north‐west and south‐east portions of this species' range. Contemporarily, our models suggest that the Great Plains may be restricting bobcat migration and gene flow, effectively maintaining disparate populations. Morphological analyses identified a significant linear trend in shape variation across latitudinal and longitudinal gradients rather than distinct morphological divergence between lineages. Similar shape variations, however, did converge in approximate locations of assumed refugia. The findings of the present study provide a robust assessment of the biogeographical considerations for the population genetic structure of bobcats.     

The effects of the Late Quaternary glacial–interglacial cycles on Anatolian ground squirrels: range expansion during the glacial periods?

The present study aimed to understand how Anatolian ground squirrels, Spermophilus xanthoprymnus (Bennett, 1835), have responded to global climate changes through the Late Quaternary glacial–interglacial cycles. Accordingly, ecological niche modelling was used, together with molecular phylogeography. Using species occurrence data compiled from field observations and relevant sources and the maximum entropy machine learning algorithm in MAXENT, an ecological niche model was developed to predict the potential geographical distribution of S. xanthoprymnus under reconstructed past (the Last Interglacial, approximately 130 000–116 000 years ago and the Last Glacial Maximum, 21 000 years ago) and present (1950–2000) bioclimatic conditions. In addition, using cytochrome b mitochondrial DNA sequences deposited in GenBank and the Bayesian skyline plot in BEAST, demographic events (population fluctuations) were further assessed over the history of Anatolian ground squirrels. Combined ecological niche modelling and molecular phylogeography revealed that S. xanthoprymnus, itself also a temperate (mid‐latitude) species, has responded to global climate changes through the Late Quaternary glacial–interglacial cycles in a fashion converse to that of most temperate (mid‐latitude) species: its range expanded rather than contracted during the glacial periods and contracted rather than expanded during the interglacial periods. In other words, Anatolian ground squirrels have been in refugia during the interglacial periods, suggesting that the classical paradigm of glacial range contraction and interglacial range expansion for temperate species may not be as general as previously assumed. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 109 , 19–32.     

A new form of wapiti Cervus canadensis Erxleben, 1777 (Cervidae,Mammalia) from the Late Pleistocene of France

A well-preserved antlered braincase of wapiti (Cervus canadensis) from the Late Pleistocene of Saint-Hippolyte (Puy de Dôme, France) is described herein. The specific morphology of antlers suggests peculiar adaptations to the open landscapes of periglacial tundra-steppe that permitted to identify a new fossil subspecies Cervus canadensis combrayicus n. ssp. The specimen attests the occurrence of Cervus canadensis in the paleontological record of Western Europe and helps to clarify the systematical position of some disputed findings of Cervus from Western Europe. The revised systematic position of some fossil and sub-fossil cervid findings reveals the paleobiogeographic story of wapiti in Western Europe during the Last Glacial Maximum and the postglacial time. The treeless Alpine altitudes and Sweden are proposed as the glacial refugia for the last European wapiti. The medium-sized deer from Capri Island is regarded as an insular dwarfed wapiti C. canadensis tyrrhenicus closely related to the continental form C. canadensis palmidactyloceros from the alpine refugium.     

The not‐so‐Irish spurge: Euphorbia hyberna (Euphorbiaceae) and the Littletonian plant ‘steeplechase’

The disjunct distributions of the Lusitanian flora, which are found only in south‐west Ireland and northern Iberia, and are generally absent from intervening regions, have been of great interest to biogeographers. There has been much debate as to whether Irish populations represent relicts that survived the Last Glacial Maximum (LGM; approximately 21 kya), or whether they recolonized from southern refugia subsequent to the retreat of the ice and, if so, whether this occurred directly (i.e. the result of long distance dispersal) or successively (i.e. in the manner of a ‘steeplechase’, with the English Channel and Irish Sea representing successive ‘water‐jumps’ that have to be successfully crossed). In the present study, we used a combined palaeodistribution modelling and phylogeographical approach to determine the glacial history of the Irish spurge, Euphorbia hyberna, the sole member of the Lusitanian flora that is also considered to occur naturally in south‐western England. Our findings suggest that the species persisted through the LGM in several southern refugia, and that northern populations are the result of successive recolonization of Britain and Ireland during the postglacial Littletonian warm stage, akin to the ‘steeplechase’ hypothesis. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 114 , 249–259.     

The vegetation and climate at the last glaciation on the emerged continental shelf of the South China Sea

Studies on the dispersal mechanism and source areas of pollen from hemipelagic sediments recovered from the continental slopes of the South China Sea (SCS) reveal that vegetation existed on the exposed shelves at the Last Glacial Maximum (LGM) and the latter part of the Marine Isotope Stage 3. At the low sea level stand, Artemisia-dominated grassland covered the northern continental shelf and tropical lowland rainforest and mangroves grew on the southern shelf ‘Sunda Land’. Consequently, the climate in the northern SCS must have been much colder and drier during the last glacial period compared to the present. Sunda Land experienced only a marginally lower temperature but was not drier than today. The enhanced contrast between the northern and southern parts of the SCS in vegetation and climate during the LGM may be ascribed, at least partly, to the strengthening of Winter Monsoon during the last glacial period.     

The deep population history of northern East Asia from the Late Pleistocene to the Holocene

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Ecological niche conservatism and Pleistocene refugia in the Thrush-like Mourner, Schiffornis sp., in the neotropics

Recent studies have increasingly implicated deep (pre-Pleistocene) events as key in the vertebrate speciation, downplaying the importance of more recent (Pleistocene) climatic shifts. This work, however, has been based almost exclusively on evidence from molecular clock inferences of splitting dates. We present an independent perspective on this question, using ecological niche model reconstructions of Pleistocene Last Glacial Maximum (LGM) potential distributions for the Thrush-like Mourner (Schiffornis turdina) complex in the neotropics. LGM distributional patterns reconstructed from the niche models relate significantly to phylogroups identified in previous molecular systematic analyses. As such, patterns of differentiation and speciation in this complex are consistent with Pleistocene climate and geography, although further testing will be necessary to establish dates of origin firmly and unambiguously.     

The management implications of canopy research

So little is known about about what goes on above our heads in rain forests and what lives there that the rain forest canopy has been called the last biological frontier. Until very recently, researchers had very limited access to the canopy, even in temperate forests and, not surprisingly, we are only just beginning to discover this part of the world. A new breed of scientists, canopy biologists, has evolved and have accelerated the rate of discovery. The implications for management of forests of this new voyage of discovery are enormous. At present conservationists, forest managers, environmental policy makers, and other research users have not even started to consider how to integrate the resulting new information for future planning and sustainable management and use of forests.The Earth Summit in 1992 drew attention to several of the principal biological dilemmas of the 20th century: biodiversity and forest loss, land conversion, climate change and ozone depletion. Understanding the importance of forest canopies for these issues is essential and researchers need to consider how better to coordinate their activities and deliver their results if they are to influence decision making at all levels. One new initiative shows some promise in this regard. Recently the United Nations Environment Program has supported the International Canopy Crane Network. This network of crane sites around the world will focus on providing an improved scientific basis for the importance of the forest canopy with respect to the Conventions on Biological Diversity, Climate Change and Ozone Depletion.