Comparative Investigation of the Composition and Structure of Microbial Biofilms Retrieved at Meat-Processing Plants Using Different Raw Materials

Microbiology - Localization and structural organization of microbial biofilms developing in anthropogenic ecological niches of meat-processing plants using different raw materials (poultry, pork,...     

Allelopathic Effects of Tree Species on Some Soil Microbial Populations and Herbaceous Plants

The allelopathic potential of four tree species on soil microbial populations and some herbaceous plants (two understory species and one general biotest species) was investigated. Effects of three nonindigenous tree species, Eucalyptus globulus Labill, Pinus radiata D.Don and Acacia melanoxylon R.Br., on microorganisms participating in the cycle of nitrogen were evaluated, comparing them with those produced by the autochthonous Quercus robur L. Influence of the trees on Lactuca sativa L., Dactylis glomerata L. and Trifolium repens L. was also checked in bioassays. Cell numbers of Nitrosomonas sp. were negatively affected by Acacia and Eucalyptus stands, mainly during spring, when flowers are especially abundant on the ground. Proteolytic microorganisms were also negatively affected by Eucalyptus and Pinus stands, whilst Quercus stand did not show any toxicity. Soil bioassays showed clear inhibitory effects on germination and growth of understory plants, particularly soils from Eucalyptus and Acacia stands. The greatest effects had the soil from Acacia stand, which was phytotoxic during the whole period of germination and growth of understory plants. Allelopathic phenomena could be, at least partially, responsible of the low species diversity in the understory of the nonindigenous tree stands.     

Effect of Hypothermia on the Composition of Phenolics in Buckwheat Plants with Different Ploidy

Russian Journal of Plant Physiology - Effect of hypothermia (5°С; 1 and 7 days) on growth processes and accumulation of phenolic compounds in above-ground organs was investigated in...     

Changes in Carotenoid Composition of Certain Roses with Age

The carotenoid composition of the anthers and styles and thefruits of four roses of different ages have been investigated.ß-carotene and its epoxides were present at all stagesstudied, as were the ß-carotene derived xanthophyllauroxanthin and the -carotene derived flavoxanthin and chrysanthemaxanthin.As the various parts aged, the control of carotenoid synthesiswas removed, oxidative processes took place with the resultthat very few members of the -carotene series were found, andepoxy-carotenoids and their derivatives were the main carotenoidspresent. Rubixanthin, 3-hydroxy--carotene characteristic ofrose hips was found in fairly large amounts in anthers and stylesand -carotene was probably the precursor of this pigment. Rosehips were also investigated for their vitamin-A contents whichwere not as high as those of All Gold flowers.     

自交作物群体的遗传组成分析

用数学方法推导出了自交作物群体遗传组成的分析公式。根据所推出的公式,可以计算出任何自交世代群体的基因型频率和同一表现型中各基因型的频率。对自交群体遗传组成的分析可用于质量性状的选择,确定选择时需要的有效群体大小和选出有效群体的大小,亦有助于确定选择的最佳世代。     

Determination of Microbial Populations with Piezoelectric Membranes

The ultrasonic determination of microbial population was carried out by using a new apparatus composed of two piezoelectric membranes. When the apparatus was immersed in a medium containing cells and an arbitrary voltage was charged on a piezoelectric membrane, an output voltage was obtained from the other membrane. The output voltage increased with increasing cell numbers. The linear relationships between the output voltage and microbial populations of Saccharomyces cerevisiae, Bacillus subtilis, and Klebsiella sp. were observed, and the output voltage was reproducible with a relative error of 6%. Furthermore, the cell population of S. cerevisiae in a fermentor could be continuously determined with this apparatus.     

Pyrene and Phenanthrene Influence on Soil Microbial Populations

Two studies were conducted to evaluate microbial populations in polycyclic aromatic hydrocarbon-contaminated soil. Captina silt loam was freshly exposed to (1) 0 or 2000?mg pyrene/kg and sampled after 10- and 61-wk incubation and (2) 0 or 505?mg pyrene + 445?mg phenanthrene/kg and sampled after a 21-wk incubation. Microbial numbers were determined by plate-count techniques. Isolated bacteria, selected degraders, and wholesoil extracts were analyzed by fatty acid methyl ester analysis (FAME). In the pyrene experiment, pyrene did not affect total bacterial or fungal numbers, but pyrene degraders increased from undetectable levels to 7.09 log₁₀ degraders/g in the contaminated soil. The FAME analysis of bacterial isolates detected no pyrene effect, but wholesoil FAME indicated an increase in the contaminated soil of a fatty acid characteristic of protozoa and a major fatty acid detected in isolated degraders. In the pyrene + phenanthrene experiment, the contaminants had no impact on bacterial, fungal, or actinomycete numbers but increased degrader numbers. No effect of pyrene + phenanthrene was detected by isolate FAME, but whole-soil FAME indicated an effect similar to that in the pyrene experiment. The results indicate that pyrene, although not impacting microbial numbers, may have altered the soil microbial composition and that Captina silt loam can develop an effective degrader population under tested conditions.     

Pyrene and Phenanthrene Influence on Soil Microbial Populations

Two studies were conducted to evaluate microbial populations in polycyclic aromatic hydrocarbon-contaminated soil. Captina silt loam was freshly exposed to (1) 0 or 2000 mg pyrene/kg and sampled after 10- and 61-wk incubation and (2) 0 or 505 mg pyrene + 445 mg phenanthrene/kg and sampled after a 21-wk incubation. Microbial numbers were determined by plate-count techniques. Isolated bacteria, selected degraders, and wholesoil extracts were analyzed by fatty acid methyl ester analysis (FAME). In the pyrene experiment, pyrene did not affect total bacterial or fungal numbers, but pyrene degraders increased from undetectable levels to 7.09 log₁₀ degraders/g in the contaminated soil. The FAME analysis of bacterial isolates detected no pyrene effect, but wholesoil FAME indicated an increase in the contaminated soil of a fatty acid characteristic of protozoa and a major fatty acid detected in isolated degraders. In the pyrene + phenanthrene experiment, the contaminants had no impact on bacterial, fungal, or actinomycete numbers but increased degrader numbers. No effect of pyrene + phenanthrene was detected by isolate FAME, but whole-soil FAME indicated an effect similar to that in the pyrene experiment. The results indicate that pyrene, although not impacting microbial numbers, may have altered the soil microbial composition and that Captina silt loam can develop an effective degrader population under tested conditions.     

Microbial Populations of the River-Recharged Fredericton Aquifer

The City of Fredericton, New Brunswick, Canada obtains its water from the Saint John River-recharged Fredericton aquifer. Water quality improves as it flows from the river into the aquifer in a process called bank filtration. Microorganisms contribute to water quality improvements during bank filtration by removing organic carbon. In the Fredericton aquifer, microbially catalyzed reductive dissolution of manganese oxide minerals negatively affects water quality. Aerobic and anaerobic microorganisms were cultured from Fredericton aquifer production well water, from associated bedrock groundwater, and from Saint John River sediment core and sediment groundwater samples. Aerobes were the largest culturable groups in all samples. The ratio of aerobes to other microbial groups, i.e., those reducing nitrate, Mn^{4 +}, Fe^{3 +}, or sulfate, did not vary significantly along the water flow path from the river to the aquifer. Analysis of microbial community composition along the flow path indicated an essentially identical community except in the immediate vicinity of the aquifer. This is in agreement with the absence of macroscale redox zones in the sediment below the Saint John River as determined by groundwater geochemical data. Bacteria isolated from groundwater samples, identified by 16S ribosomal RNA gene sequencing, were α -, β -, γ -, and δ -Proteobacteria, Actinobacteria, and Firmicutes. In contrast to groundwater samples, the majority of bacteria isolated from sediments were γ -Proteobacteria. Numbers of manganese-reducing bacteria, including Aeromonas spp., were small, however Mn^{4 +} reduction ability was widespread in bacteria enriched and isolated with other electron acceptors. The diverse Fredericton aquifer microbial community likely uses manganese oxide minerals as a sink for electrons derived from organic carbon oxidation.     

Electrode System for the Determination of Microbial Populations

Determinations of microbial populations were carried out by using a new electrode system composed of two electrodes. Each electrode was constructed from a platinum anode and a silver peroxide cathode. The anode of the reference electrode was covered with cellulose dialysis membrane. The response time of the electrode system was 15 min in culture broth, and current differences between the two electrodes were proportional to populations of microbial cells in cultures of Saccharomyces cerevisiae and Lactobacillus fermentum. Current differences were reproducible; the average relative error was 5%. Furthermore, cell populations of S. cerevisiae in a fermentor could be continuously estimated by using this electrochemical method.     

Populations of Aerobic Bacteria Associated with the Roots of Apple and Cherry Plants

S ummary . The incidence of bacteria on the surface of apple and cherry roots was compared over a period of 20 months with those in rhizosphere and root-free soils. Seasonal variation in total and in Gram negative bacterial populations in soils and on roots was essentially similar. The highest numbers occurred between November and March and the lowest in September. Little general stimulation of bacteria near roots was detected and, on occasion, negative values were recorded for rhizosphere effect. The results indicated that edaphic factors rather than root activity had the major influence on population levels. Fluorescent pseudomonads were low in number and this suggests either that fruit tree roots were unable to support large numbers of these bacteria or that colonization from the soil populations was irregular. However, in contrast to other bacteria, there was a marked stimulatory effect on fluorescent pseudomonads, particularly in apple rhizo-spheres where a maximum rhizosphere/soil ratio of 131 was recorded.     

Variability in Microbial Community Composition and Function Between Different Niches Within a Coral Reef

To explore how microbial community composition and function varies within a coral reef ecosystem, we performed metagenomic sequencing of seawater from four niches across Heron Island Reef, within the Great Barrier Reef. Metagenomes were sequenced from seawater samples associated with (1) the surface of the coral species Acropora palifera, (2) the surface of the coral species Acropora aspera, (3) the sandy substrate within the reef lagoon and (4) open water, outside of the reef crest. Microbial composition and metabolic function differed substantially between the four niches. The taxonomic profile showed a clear shift from an oligotroph-dominated community (e.g. SAR11, Prochlorococcus, Synechococcus) in the open water and sandy substrate niches, to a community characterised by an increased frequency of copiotrophic bacteria (e.g. Vibrio, Pseudoalteromonas, Alteromonas) in the coral seawater niches. The metabolic potential of the four microbial assemblages also displayed significant differences, with the open water and sandy substrate niches dominated by genes associated with core house-keeping processes such as amino acid, carbohydrate and protein metabolism as well as DNA and RNA synthesis and metabolism. In contrast, the coral surface seawater metagenomes had an enhanced frequency of genes associated with dynamic processes including motility and chemotaxis, regulation and cell signalling. These findings demonstrate that the composition and function of microbial communities are highly variable between niches within coral reef ecosystems and that coral reefs host heterogeneous microbial communities that are likely shaped by habitat structure, presence of animal hosts and local biogeochemical conditions.     

Fine Structure and Carotenoid Composition of the Fibrillar Chromoplasts of Asparagus officinalis L.

The spindle-shaped chromoplasts of the ripe fruit of Asparagusofficinalis developed from chloroplasts that lost grana andstroma lamellae and accumulated large-sized plastoglobules,most of which transformed into fibrils of exceptionally largediameter. The carotenoid concentration was high in ripe fruits(2520 µg g^–1 fresh wt) and consisted mainly of capsanthin,ß-carotene and zeazanthin. A. officinalis is onlythe third species reported to contain both capsanthin and capsorubin. The large diameter of both fibrils and their associated plastoglobulesenabled verification that flbrils pass through plastoglobules.Unlike most fibrillar chromoplasts, the plastoglobules remainedassociated with flbrils even in fully-ripe fruit, and a straightline relationship can be established between plastoglobule andfibril diameter. The presence of more than one fibril developingfrom a plastoglobule, and the occasional existence of fibrilstwisted helically around one another, is interpreted to meanthat fibril growth by lateral addition of microfibrils is unlikely. The microfibrillar ultrastructure of Asparagus flbrils was differentto that found for Capsicum fibrils, and these differences areillustrated in two models. These differences, however, do notnecessarily mean that the fibrils of each species are constructedof different protein sub-units, although the bonding betweensub-units is different.     

Comparative Study of the Carotenoid Composition of the Seeds of Ripening Momordica charantia and Tomatoes

The total carotenoid concentration of the seeds of Momordica charantia rose about 100-fold from the immature to the ripe stage. The massive increase was almost exclusively attributable to lycopene, which accounted for 96% of the carotenoids of the ripe seeds. The carotenoid pattern of the seed was found to be drastically different from that of the pericarp. The seed, which contained fewer carotenoids, had a total concentration 12 times greater than that in the pericarp at the ripe stage. The acyclic lycopene selectively accumulated in the seed, whereas the cyclic carotenoids, cryptoxanthin, zeaxanthin and β-carotene, were the principal pigments of the ripe pericarp. The seed of ripe tomatoes reflected the qualitative pattern of the whole fruit. The total carotenoid concentration was, however, much lower and the lycopene content was particularly low. β-Carotene, having a comparatively high concentration, emerged as the major pigment of the seed.     

Ontogeny of Different Life Forms of Plants and Specific Features of Age and Spatial Structure of Their Populations

Materials have been generalized that were accumulated in population-ontogenetic studies of plants and leading features of the ontogeny of plants have been noted that determine specific structural features of their populations. The described patterns allowed the authors to develop simulation models of plant population dynamics. The results of simulation are provided, and they are compared to the empirical data. Problems have been considered that concern the influence of specific features of development of different plant biomorphs on the genetic structure of populations and biocoenotic processes.     

Retrieval of Concentrated and Undecompressed Microbial Populations from the Deep Sea

A device for sampling at depths of up to 6,000 m is described in which 3 liters of seawater is concentrated over a Nucleopore filter to about 13 ml and retrieved under in situ pressure and temperature. Subsamples can be withdrawn into transfer units that are equipped with individual gas accumulators for preventing loss of pressure during prolonged periods of storage. Transfer of samples or sample portions into sterile medium contained in pre-pressurized incubation vessels and continued subsampling therefrom permit time course experiments for the study of natural populations of deep-sea microorganisms in the absence of decompression. A test experiment with a water sample from a depth of 2,600 m supplemented with radioactively labeled Casamino Acids showed reduced rates of substrate incorporation and respiration as compared with data from a decompressed control. The barotolerance observed in this study was characterized by reduced, rather than equal, activities recorded at elevated pressures as compared with 1-atm controls.     

Assembly of the LH2 Light-Harvesting Complexes of Thiorhodospira sibirica with Different Carotenoid Levels

Microbiology - Regardless of cultivation conditions, two types of LH2 complexes are always assembled in photosynthetic membranes of Thiorhodospira (T.) sibirica: short-wave B800?830 and...     

Comparison of Diversities and Compositions of Bacterial Populations Inhabiting Natural Forest Soils

The diversity and composition of soil bacterial communities were compared among six Austrian natural forests, including oak-hornbeam, spruce-fir-beech, and Austrian pine forests, using terminal restriction fragment length polymorphism (T-RFLP, or TRF) analysis and sequence analysis of 16S rRNA genes. The forests studied differ greatly in soil chemical characteristics, microbial biomass, and nutrient turnover rates. The aim of this study was to relate these differences to the composition of the bacterial communities inhabiting the individual forest soils. Both TRF profiling and clone sequence analysis revealed that the bacterial communities in soils under Austrian pine forests, representing azonal forest types, were distinct from those in soils under zonal oak-hornbeam and spruce-fir-beech forests, which were more similar in community composition. Clones derived from an Austrian pine forest soil were mostly affiliated with high-G+C gram-positive bacteria (49%), followed by members of the α-Proteobacteria (20%) and the Holophaga/Acidobacterium group (12%). Clones in libraries from oak-hornbeam and spruce-fir-beech forest soils were mainly related to the Holophaga/Acidobacterium group (28 and 35%), followed by members of the Verrucomicrobia (24%) and the α-Proteobacteria (27%), respectively. The soil bacterial communities in forests with distinct vegetational and soil chemical properties appeared to be well differentiated based on 16S rRNA gene phylogeny. In particular, the outstanding position of the Austrian pine forests, which are determined by specific soil conditions, was reflected in the bacterial community composition.     

Differences in Microbial Activity and Microbial Populations of Peat Associated with Suppression of Damping-Off Disease Caused by Pythium sylvaticum

The microbiological characteristics associated with disease-suppressive peats are unclear. We used a bioassay for Pythium sylvaticum-induced damping-off of cress seedlings to identify conducive and suppressive peats. Microbial activity in unconditioned peats was negatively correlated with the counts of P. sylvaticum at the end of the bioassay. Denaturing gradient gel electrophoresis (DGGE) profiling and clone library analyses of small-subunit rRNA gene sequences from two suppressive and two conducive peats differed in the bacterial profiles generated and the diversity of sequence populations. There were also significant differences between bacterial sequence populations from suppressive and conducive peats. The frequencies of a number of microbial groups, including the Rhizobium-Agrobacterium group (specifically sequences similar to those for the genera Ochrobactrum and Zoogloea) and the Acidobacteria, increased specifically in the suppressive peats, although no single bacterial group was associated with disease suppression. Fungal DGGE profiles varied little over the course of the bioassay; however, two bands associated specifically with suppressive samples were detected. Sequences from these bands corresponded to Basidiomycete yeast genera. Although the DGGE profiles were similar, fungal sequence diversity also increased during the bioassay. Sequences highly similar to those of Cryptococcus increased in relative abundance during the bioassay, particularly in the suppressive samples. This study highlights the importance of using complementary approaches to molecular profiling of complex populations and provides the first report that basidiomycetous yeasts may be associated with the suppression of Pythium-induced diseases in peats.