Preliminary survey of indoor and outdoor airborne microfungi at coastal buildings in Egypt

Forty six species and two sterile fungi and yeast species were isolated from samples collected both indoors and outdoors of coastal buildings located in an Egyptian coastal city. Twenty flats from ten buildings were investigated; children living in these buildings have been reported to suffer from respiratory illnesses. Samples were taken using a New Brunswick sampler (model STA-101) operating for 3.0 min at a flow rate of 6.0 l/min. Most of the species isolated have been associated with symptoms of respiratory allergies. Indoors the total culturable fungal count was 1548 CFU/m³; outdoors, it was 1452 CFU/m³. Indoor values of culturable fungal count, total spores count and ergosterol content ranged from 52 to 124 CFU/m³, 100 to 400 spore/m³ and 5 to 27.7 mg/m³, respectively, whereas outdoor levels typically varied between 25 and 222 CFU/m³, 110 and 900 spore/m³ and 3.3 and 67.2 mg/m³, respectively. The maxima for these parameters were detected indoors in house no. 6 and outdoors, outside of house no. 7. The most abundant species were primarily mitosporic (2832 CFU/m³). The most frequent species in both the indoor and outdoor samples were Cladosporium cladosporioides followed by Alternaria alternata and Penicillium chrysogenum,with inside:outside ratios of 1.4, 1.8 and 1.9, respectively. The patterns of fungal abundance were influenced to some extent by changes in the relative humidity and temperature. Other factors, such as type of culture media, rate of sedimentation, size, survival rates of spore and species competition,also affected fungal counts and should be taken into consideration during any analysis of bioaerosol data.     

A comparison of airborne and dust-borne allergens and toxins collected from home,office and outdoor environments both in New Haven,United States and Nanjing,China

In this study, the airborne and dust-borne concentrations of endotoxin, (1,3)-β-d-glucan and five house dust allergens were measured in office, home, and outdoor environments both in New Haven, United States and Nanjing, China. Air samples were collected using a BioSampler at a flow rate of 12.5 l/min for 30 min. Dust samples were simultaneously collected using a surface sampler. Dust samples went through extraction and dilution before analysis, while air samples were analyzed directly. Limulus Amoebocyte Lysate (LAL) Pyrochrome and Glucatell assays were used to quantify endotoxin and (1,3)-β-d-glucan concentration levels, respectively. Enzyme-linked sorbent assay was used to measure the dust mites, cat, dog, and cockroach allergens. The experimental results indicated that endotoxin, (1,3)-β-d-glucan and allergen concentrations vary greatly both with samples and environments. In all tested environments, endotoxin concentration ranged from 0.8 to 83.7 ng/m³ for air, and 7.8 to 14.3 ng/mg for dust. (1,3)-β-d-glucan concentration ranged from 0.1 to 9.8 ng/m³ for air, and 6.6 to 110 ng/mg for dust. Cockroach allergens were detected only in New Haven office and outdoor environments, and other allergens ranged from 0.1 to 90 ng/mg for dust samples, and from 1.5 to 1,282 ng/m³ for air samples. In general, similar profiles of allergens and toxins were observed in New Haven and Nanjing environments. Linear regression analysis showed that there were better endotoxin and (1,3)-β-d-glucan linear correlations (R ² = 0.78, 0.87, respectively) between the dust and air samples compared to those of the allergens Der f 1 and Der p 1 (R ² = 0.5, 0.7, respectively). This research contributes to the development of robust biological exposure assessment and the elaboration of airborne and dust-borne bio-mass in the living environments.     

Concentration and distribution characteristics of airborne fungi in indoor and outdoor air of Tehran subway stations

The concentration and distribution characteristics of airborne fungi were investigated in indoor and outdoor air of two metro stations (Imam Khomeini and Sadeghiyeh stations) in Tehran subway. Samples were taken from indoor air at each station from platform and ticket office area also from adjacent outdoor air of each station. Indoor sampling was conducted for two types of trains, old and new. The concentration of airborne fungi ranged from 21 CFU/m³ at the outdoor air of Imam Khomeini station to 1,402 CFU/m³ in the air samples collected from the platform of this station. Results showed that airborne fungi concentrations at indoor air were higher than the outdoor air (p < 0.05), and fungal levels significantly correlated with the number of passengers (p < 0.05; r = 0.68) and RH % (p < 0.05; r = 0.43). Sixteen genera of fungi were isolated in all sampled environments. The predominant genera identified in indoor and outdoor air were Penicillium spp. (34.88 % of total airborne fungi) and Alternaria spp. (29.33 % of total airborne fungi), respectively. The results of this study showed that the indoor air quality in subway is worse than the outdoor air.     

The distribution of peanut fungi in the Southeastern United States

During a four-year survey in Alabama, Georgia, North Carolina, Oklahoma, Texas and Virginia of the fungi associated with peanut shells and seeds 70 genera and 146 species of fungi were identified. Twenty-seven genera and 60 species were isolated from peanut fruits for the first time. Nine genera are Phycomycetes, 17 are Ascomycetes, and 44 are Deuteromycetes. A total of 110 genera and about 200 species of fungi have now been reported from peanuts. A key to the genera reported in this study is included, along with the distribution by state for each species.Journal Series Paper No. 1066, University of Georgia College of Agriculture Experiment Stations, College Station, Athens. This work was supported in part by funds under Cooperative Agreement No. 12-14-100-9378 (34), administered by Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture.     

Profiles of Airborne Fungi in Buildings and Outdoor Environments in the United States

We examined 12,026 fungal air samples (9,619 indoor samples and 2,407 outdoor samples) from 1,717 buildings located across the United States; these samples were collected during indoor air quality investigations performed from 1996 to 1998. For all buildings, both indoor and outdoor air samples were collected with an Andersen N6 sampler. The culturable airborne fungal concentrations in indoor air were lower than those in outdoor air. The fungal levels were highest in the fall and summer and lowest in the winter and spring. Geographically, the highest fungal levels were found in the Southwest, Far West, and Southeast. The most common culturable airborne fungi, both indoors and outdoors and in all seasons and regions, were Cladosporium, Penicillium, nonsporulating fungi, and Aspergillus. Stachybotrys chartarum was identified in the indoor air in 6% of the buildings studied and in the outdoor air of 1% of the buildings studied. This study provides industrial hygienists, allergists, and other public health practitioners with comparative information on common culturable airborne fungi in the United States. This is the largest study of airborne indoor and outdoor fungal species and concentrations conducted with a standardized protocol to date.     

Sources of bacteria in outdoor air across cities in the midwestern United States

Bacteria are abundant in the atmosphere, where they often represent a major portion of the organic aerosols. Potential pathogens of plants and livestock are commonly dispersed through the atmosphere, and airborne bacteria can have important effects on human health as pathogens or triggers of allergic asthma and seasonal allergies. Despite their importance, the diversity and biogeography of airborne microorganisms remain poorly understood. We used high-throughput pyrosequencing to analyze bacterial communities present in the aerosol fraction containing fine particulate matter of ≤2.5 μm from 96 near-surface atmospheric samples collected from cities throughout the midwestern United States and found that the communities are surprisingly diverse and strongly affected by the season. We also directly compared the airborne communities to those found in hundreds of samples representing potential source environments. We show that, in addition to the more predictable sources (soils and leaf surfaces), fecal material, most likely dog feces, often represents an unexpected source of bacteria in the atmosphere at more urbanized locations during the winter. Airborne bacteria are clearly an important, but understudied, component of air quality that needs to be better integrated into efforts to measure and model pollutants in the atmosphere.     

Vegetation growth enhancement in urban environments of the Conterminous United States

Cities are natural laboratories for studying vegetation responses to global environmental changes because of their climate, atmospheric, and biogeochemical conditions. However, few holistic studies have been conducted on the impact of urbanization on vegetation growth. We decomposed the overall impacts of urbanization on vegetation growth into direct (replacement of original land surfaces by impervious built‐up) and indirect (urban environments) components, using a conceptual framework and remotely sensed data for 377 metropolitan statistical areas (MSAs) in the conterminous United States (CONUS) in 2001, 2006, and 2011. Results showed that urban pixels are often greener than expected given the amount of paved surface they contain. The vegetation growth enhancement due to indirect effects occurred in 88.4%, 90.8%, and 92.9% of urban bins in 2001, 2006, and 2011, respectively. By defining offset value as the ratio of the absolute indirect and direct impact, we obtained that growth enhancement due to indirect effects compensated for about 29.2%, 29.5%, and 31.0% of the reduced productivity due to loss of vegetated surface area on average in 2001, 2006, and 2011, respectively. Vegetation growth responses to urbanization showed little temporal variation but large regional differences with higher offset value in the western CONUS than in the eastern CONUS. Our study highlights the prevalence of vegetation growth enhancement in urban environments and the necessity of differentiating various impacts of urbanization on vegetation growth, and calls for tailored field experiments to understand the relative contributions of various driving forces to vegetation growth and predict vegetation responses to future global change using cities as harbingers.     

The impact of invasive fungi on agricultural ecosystems in the United States

Invasive fungi and other non-indigenous plant pathogens have had a significant effect on American agriculture for hundreds of years. At present crop loss due to invasive plant pathogens, especially fungi, is estimated at $21 billion per year in the United States, greater than the loss caused by non-indigenous insects. Plant pathogenic fungi are difficult to detect and identify. Thus knowledge of which fungi pose a threat is essential to prevent their entry by means others than inspection. In this paper, examples are presented of invasive fungi on agricultural commodities introduced into the United States. In all cases two factors have been crucial: first, the pathway through which these fungi have entered, and second, systematic knowledge to prevent and respond to the new invasive species. Historically important plant pathogens such as black stem rust of wheat still cause considerable damage while others such as late blight of potato appear to be having a resurgence. Known previously in Australia, then moving to Africa and South America, the virulent species of soybean rust appeared in the U.S. in 2004 but has not been as devastating as anticipated. Plant pathogenic fungi on specialty crops such as daylily, gladiola and chrysanthemum are threatened by rust fungi recently found in the U.S. apparently brought in on infected germplasm. A crisis in the export of U.S. wheat occurred in the late 1990’s when the molecular diagnostic test for Karnal bunt gave a false positive response to a closely related but previously unknown species. Many potentially dangerous plant pathogens of crop plants have not yet been introduced into the U.S. It is critical that meticulous surveillance be conducted as plant material enters the country as well as where crops are grown prior to shipment. In addition, the scientific infrastructure is needed to be able to respond quickly to new invasive fungi. This requires sound systematic knowledge of plant pathogenic fungi both in the U.S. and around the world and a cadre of systematic experts who can characterize invasive fungi.     

Towards a virtual reality for plant-associated fungi in the United States and Canada

At present knowledge of fungal biodiversity in North America is scattered in diverse sources ranging from well-reviewed, comprehensive databases to unedited databases of reports from the literature, information on file cards, and uncomputerized reference collections. Resources available electronically were used to determine their relative importance in evaluating the plant-associated fungi known from the United States and to a lesser extent Canada. The results demonstrate that the literature provides the greatest information but that reference collections in the US National Fungus Collections contribute between 22–31% additional data. Little overlap exists between fungi isolated as endophytes and those reported in the literature or as reference collections. Eighty to 100% of the plant-associated fungi reported from Canada are accounted for in comprehensive resources for the United States. A comprehensive database of plant-associated fungi in Canada, the United States, and eventually Mexico would serve as a valuable resource for those making plant quarantine decisions.     

Multilocus PCR Assays Elucidate Vegetative Incompatibility Gene Profiles of Cryphonectria parasitica in the United States

Chestnut blight is a devastating disease of Castanea spp. Mycoviruses that reduce virulence (hypovirulence) of the causative agent, Cryphonectria parasitica, can be used to manage chestnut blight. However, vegetative incompatibility (vic) barriers that restrict anastomosis-mediated virus transmission hamper hypovirulence efficacy. In order to effectively determine the vegetative incompatibility genetic structure of C. parasitica field populations, we have designed PCR primer sets that selectively amplify and distinguish alleles for each of the six known diallelic C. parasiticavic genetic loci. PCR assay results were validated using a panel of 64 European tester strains with genetically determined vic genotypes. Analysis of 116 C. parasitica isolates collected from five locations in the eastern United States revealed 39 unique vic genotypes and generally good agreement between PCR and tester strain coculturing assays in terms of vic diversity and genotyping. However, incongruences were observed for isolates from multiple locations and suggested that the coculturing assay can overestimate diversity at the six known vic loci. The availability of molecular tools for rapid and precise vic genotyping significantly improves the ability to predict and evaluate the efficacy of hypovirulence and related management strategies.     

Root-infecting fungi associated with a decline of longleaf pine in the southeastern United States

A 35-year-old longleaf pine stand exhibited trees in various stages of decline. A study was conducted to determine root-infecting fungi and other abnormalities associated with varying degrees of crown symptoms. A four-class crown symptom rating system was devised according to ascending symptom severity. Leptographium procerum and L. terebrantis were significantly associated with increasing crown symptom severity. Heterobasidion annosum was also isolated in higher frequency as crown symptoms increased. Also, evidence of insects on roots increased as did amount of resinosis observed. Edaphic and silvicultural factors may interact with these pathogens and insects to pose a pathological limitation on longer-term management objectives. Further research is needed to determine relationships among various edaphic, silvicultural, and biological factors associated with the decline syndrome on this site. This revised version was published online in June 2006 with corrections to the Cover Date.     

Multilocus Sequence Typing and Virulence Profiles in Uropathogenic Escherichia coli Isolated from Cats in the United States

The population structure, virulence, and antimicrobial resistance of uropathogenic E. coli (UPEC) from cats are rarely characterized. The aim of this study was to compare and characterize the UPEC isolated from cats in four geographic regions of USA in terms of their multilocus sequence typing (MLST), virulence profiles, clinical signs, antimicrobial resistance and phylogenetic grouping. The results showed that a total of 74 E. coli isolates were typed to 40 sequence types with 10 being novel. The most frequent phylogenetic group was B2 (n = 57). The most frequent sequence types were ST73 (n = 12) and ST83 (n = 6), ST73 was represented by four multidrug resistant (MDR) and eight non-multidrug resistant (SDR) isolates, and ST83 were significantly more likely to exhibit no drug resistant (NDR) isolates carrying the highest number of virulence genes. Additionally, MDR isolates were more diverse, and followed by SDR and NDR isolates in regards to the distribution of the STs. afa/draBC was the most prevalent among the 29 virulence-associated genes. Linking virulence profile and antimicrobial resistance, the majority of virulence-associated genes tested were more prevalent in NDR isolates, and followed by SDR and MDR isolates. Twenty (50%) MLST types in this study have previously been associated with human isolates, suggesting that these STs are potentially zoonotic. Our data enhanced the understanding of E. coli population structure and virulence association from cats. The diverse and various combinations of virulence-associated genes implied that the infection control may be challenging.     

Indoor and outdoor airborne fungal propagule concentrations in Mexico City

Thirty homes of asthmatic adults located in Mexico City were examined to determine the predominant culturable fungi and the changes in their airborne concentrations. Fungi were cultured and identified microscopically from air samples collected in naturally ventilated homes, during both wet (July–August) and cool dry (November–December) seasons, and from settled dust from the same homes. Airborne dust from indoor yielded 99–4950 cfu m⁻³, and settled dust 10²–10⁶ cfu g⁻¹ on DG18 agar. The indoor geometric mean concentration of airborne fungi during the cool dry season was 460 cfu m⁻³ while in the wet season it was 141 cfu m⁻³. Similarly, numbers of airborne fungal propagules out of doors decreased 60% between the dry and wet season. In general, the total fungal concentrations in indoor air were less than 10³ cfu m⁻³ and a large proportion of them was collected in Stage-2 of the Andersen sampler. Moreover, the ratio between indoor and outdoor concentrations was <3:1. Five of the 30 sampled homes yielded >500 cfu m⁻³ of one genus, with up to 1493Cladosporium cfu m⁻³ or 2549Penicillium cfu m⁻³. Also, these two genera were predominant in both airborne and settled dust, and their concentrations were greater indoors than out, indicating a possible indoor source of fungal propagules. The predominant species wereCladosporium herbarum, Penicillium aurantiogriseum andP. chrysogenum. These results suggest that exposure to large concentrations of fungi occurs indoors and is associated with both seasons of the year and with particular home characteristics.     

Dustborne fungi in large office buildings

Fungi are ubiquitous in our daily environments. However, their effects on office workers' health are of great interest to many environmental health researchers. Dust has been considered an important reservoir of indoor fungi from which aerosolization and exposure could occur. We have examined the characteristics of dustborne fungal populations recovered from floors and chairs in office buildings. We investigated twenty-one offices in four office buildings in Boston, MA over a year beginning May 1997. We conducted intensive environmental sampling every six weeks to measure culturable dustborne fungi from floors and chairs, surface dust levels and water activity in carpeting. Carbon dioxide, temperature, and relative humidity were monitored continuously. Concentrations of total dustborne fungi recovered from floors were positively related to carbon dioxide ( = 0.00064; p-value = 0.0002) and temperatures between 20 and 22.5 °C (p-value = 0.0026). Also, total fungal concentrations in floors gradually increased over the year (p-value = 0.0028). Total fungi recovered from chairs varied significantly by season (p-value < 0.0001),highest in September and lowest in March, and were positively correlated with dust loads in floors ( = 0.25; p-value < 0.0001). We used principal component analysis (PCA) to reduce various observed fungal species to fewer factors. Six groups(PCA factors) were obtained for dustborne fungi recovered from both floors and chairs. The models of the first PCA factors for both floors and chairs were similar to those for total fungal concentrations. The results of this study provide essential information to further evaluate the effects of dustborne fungi on office workers' health.This revised version was published online in October 2005 with corrections to the Cover Date.     

Breastfeeding in the United States

The breastfeeding of US infants born in 1974-76 is analyzed using data form the 1976 National Survey of Family Growth. Life table estimates of the proportion of children breastfed by duration since birth and mean breastfeeding durations are presented. The life tables reported are constructed by standard cohort table methods. To compare life tables for children of mothers in various attribute categories, generalised Wilcoxon tests are used, together with multiple classification analysis for continuation at select durations. Variables considered include mother's age at the birth, ethnicity, educational level, education by ethnicity, region of residence and the child's birth order. Findings are restricted to infants remaining with their mothers for at least 2 months following delivery and surviving as of the survey date in January-September 1976. It is found that the proportion of infants breastfed was increasing rapidly, with the highest rates found among white (39%), college-educated (56%), western (56%) mothers and lowest rates among black mothers (17%) mothers with less than a high school education (19%) and mothers living in the south (24%). By age, the highest proportions are mothers at ages 25-29 (44%), followed closely by the mothers under 25 (29%). The proportions breastfeeding were also found to be higher in urban than in rural areas (38% vs. 28%) and higher at parities 1-2 (29%). A multiple classification analysis of the factors most strongly influencing breastfeeding in 1975 shows educational level to be the strongest single predictor of breastfeeding, followed by western residence and white ethnicity. Age effects were found to correlate strongly with education. Reviewing 1971-1981 changes, the proportion of mothers with less than a college education who breastfed their children increased from 19% to 51% over the decade, while the proportion among college-educated mothers rose from 42% to 74%. For children who were breastfed, the median duration was about 4.5 months. The mean was 5.5 months, with a range from about 3.0 months among black mothers with less than a high school education, to 6.0 months among college-educated white women. The nationwide changes in breastfeeding patterns and duration may confer modest health benefits on current generations of youngsters, although not benefits that are easily measured, since human milk substitutes are routinely subjected to rigourous testing for nutritional adequacy.