蛋白质组学及其技术发展

蛋白质组学产生于20世纪90年代,发展至今已日趋成熟。蛋白质组学是以生物体的全部或部分蛋白为研究对象,研究它们在生命活动过程中的作用、功能。蛋白质组学较之前的基因组学对于生命现象的解释更直接、更准确,近年得到了快速发展,并受到世界各国学者的高度关注。我们简要综述了蛋白质组学及其技术,并简单概述了这项技术在生命科学领域的应用。     

生态毒理基因组学和生态毒理蛋白质组学研究进展

将基因组学和蛋白质组学知识整合到生态毒理学中形成了生态毒理基因组学和生态毒理蛋白质组学.通过生态毒理基因组学和生态毒理蛋白质组学的研究能够在基因组和蛋白质组水平更深入理解毒物的作用机制,寻找更敏感、有效的生物标记物,形成潜在的强有力的生态风险评价工具.介绍了生态毒理基因组学和生态毒理蛋白质组学的研究进展,以及DNA芯片技术和2D-凝胶电泳技术在持久性有毒污染物的生态毒理学研究中的应用.     

蛋白质组学在疾病研究中的应用

蛋白质组学是在蛋白质水平定量、动态、整体地研究生物体的一门学科。双向电泳技术、质谱技术和生物信息学是蛋白质组学的三大支撑技术。近年来,蛋白质组学技术从整体水平出发,在更贴近生命本质的层次上去发现和理解并应用于许多疾病的早期预警、诊断和治疗。我们对蛋白质组学在心血管疾病、肝病、胰腺疾病和自身免疫性疾病等研究中的应用做了简单阐述,揭示了蛋白质组学技术在许多重大疾病研究方面具有十分诱人的发展前景。     

放线菌蛋白质组学研究进展

蛋白质是生理功能的执行者,是生命现象的直接体现者,蛋白质组学旨在阐明生物体全部或部分蛋白质在生命活动中的作用和功能。随着组学理论基础和技术方法的逐渐成熟,蛋白质组学的研究被提高到了前所未有的高度。放线菌与人类的生产和生活关系极为紧密,是产生抗生素和酶制剂的主要来源。近130多年的放线菌系统学研究和2001年模式菌株的全基因组测序,为功能基因组研究奠定了基础。与先前的基因组学和转录组学相比,放线菌蛋白质组学能更直接、更准确地解释生命现象,得到了快速发展,并受到研究者的高度关注。近年来放线菌蛋白质组学的研究主要包括复杂形态分化和发育过程、非凡的环境适应能力、与植物共生固氮、代谢机理及特殊功能、病原放线菌致病性和筛查天然产物等几个方向,为进一步促进放线菌蛋白质组学发展奠定了基础。     

蛋白质组学研究技术及其联合应用

蛋白质组学是研究细胞、组织和器官内所有蛋白质的组成及其动态变化的科学,是在蛋白质水平上定量的、动态的、整体的研究生物体。目前蛋白质组学技术分为样品制备、分离和鉴定3个方面,其新技术主要有激光捕捉显微解剖法、离心超滤法、双向凝胶电泳、同位素亲和标签技术、色谱技术以及质谱技术等。然而,任何一种蛋白质组学研究技术都有其缺陷。因此多种技术的联合应用能使蛋白质组研究更精确和完整,是蛋白质组学的发展趋势。     

非模式植物蛋白质组学研究进展

蛋白质组学研究是对基因组学研究的重要补充,它是在蛋白质水平定量、动态、整体性研究生物体。该文简要介绍了蛋白质组学的含义,蛋白质组学及植物蛋白质组学产生的科学背景,蛋白质组学的研究内容。概述了非模式植物蛋白质组学的研究进展,主要包括非模式植物个体及群体蛋白质组学,组织和器官蛋白质组学,亚细胞蛋白质组学,响应环境变化的蛋白质组学以及非模式植物生物环境因子的蛋白质组学的研究情况,同时对植物蛋白质组学的发展前景进行了展望。     

蛋白质组学新技术及其在肿瘤标志物探索性研究中的应用

作为基因组研究的延伸,蛋白质组学已成为世界生命科学领域的一个极其活跃的部分,是功能基因组时代或后基因组时代的核心。近年来发展起来的几种蛋白质组学新技术克服了传统蛋白质组学技术的不足,有力推进了肿瘤标志物的探索性研究。尽管如此,我们仍应该强调对实验结果的验证,这一点在探索性研究中尤其重要,力求使结果更精确、可靠和有效。     

快速发展的亚细胞蛋白质组学

亚细胞蛋白质组是蛋白质组学领域中的一支新生力量 ,已成为蛋白质组学新的主流方向 ,通过多种策略和技术方法 ,一些重要的亚细胞结构的蛋白质组不断的得到分析 ,到目前为止 ,几乎所有亚细胞结构的蛋白质组学研究都有报道 ,而且已经深入到亚细胞器和复合体水平 ;另外 ,不仅局限于对亚细胞结构的蛋白组成进行简单分析 ,而且更注重功能性分析 ,将定量技术和差异分析引入亚细胞蛋白质组学 ,来观察此亚细胞结构的蛋白质组在某些生理或病理条件下的变化 ,这已经成为亚细胞蛋白质组学新的发展方向 .亚细胞蛋白质组学最大的困难在于怎样确认鉴定出来蛋白质的定位 ,是在提取过程中的污染还是真正在此亚细胞结构中有定位 ?这将是亚细胞蛋白质组学需要努力解决的挑战 .文章全面介绍了亚细胞蛋白质组学的最新研究进展 ,阐述了亚细胞蛋白质组学面临的挑战 ,并对亚细胞蛋白质组学的发展方向作了展望 .     

蛋白质组学方法在细胞内信号转导研究中的应用

蛋白质组学的新技术为我们研究细胞内的信号转导过程提供了更广泛和崭新的思路,它克服了传统技术的局限性,实现了对蛋白的高通量分析。简要综述了蛋白质组学技术在信号转导过程中信号分子的确定、定量,磷酸化等翻译后修饰的识别,以及蛋白质之间相互作用研究等方面的应用。     

叶绿体蛋白质组学研究进展

蛋白质组分析是鉴定蛋白质种类和功能的有力工具之一。叶绿体作为光合作用的重要细胞器,叶绿体蛋白质组学成为了研究的热点,涉及的领域包括叶绿体的总蛋白质组学、亚细胞蛋白质组学、差异蛋白质组学和蛋白质的功能等。现主要介绍蛋白质组学的常用技术以及叶绿体蛋白质组学的最新研究进展。     

基于芽苗砧嫁接油茶砧穗创伤后内源激素动态变化分析

为研究油茶(Camellia oleifera A)嫁接时穗条和砧木创伤后内源激素动态变化规律,解析影响砧穗嫁接面愈合的生理机制,为油茶砧穗愈合生长机理提供理论支持。以树龄6年的长林18号和53号的穗条和实生砧木为材料,按照芽苗砧嫁接方法切割穗条S0(0 min)、S10(10 min)、S40(40 min)和砧木茎段Z0(0 min)、Z10(10 min)后,利用液质联用法(HPLC-MS)测定吲哚乙酸(IAA)、脱落酸(ABA)、反式玉米素(TZR)、玉米素(Zeatin)、水杨酸(SA)和茉莉酸(JA)含量,分析不同时间段内源激素变化及品种间差异的关系。结果显示:创伤后18号的TZR、Zeatin和SA含量总体高于53号;18号IAA、SA和JA逐渐下降;TZR和Zeatin分别在S10和S0达最高值后下降;ABA在S10达最高值。53号IAA和JA爱S10达最高值后下降;TZR、Zeatin和SA在S10达低值后逐渐上升;ABA在S0达高值后逐渐下降。砧木茎段创伤前后激素含量除JA外18号高于53号;两品种Z0时激素含量下降,Z10后上升,仅53号ABA和SA含量在Z0达高值后下降。砧木茎段和根部激素含量在品种间除JA外18号高于53号,茎段的IAA、ABA高于根部,其他激素为根部高于茎段。激素比值在品种间和部位间差异明显;IAA/ABA、IAA/TZR、IAA/Zeatin和IAA/JA、ABA/TZR、ABA/Zeatin和ABA/JA比值为53号高于18号;穗条内SA/IAA为18号高于53号,SA/JA和SA/ABA为53号高于18号;砧木茎段均为18号高于53号;TZR/SA、TZR/JA比值在穗条和砧木茎段为18号高于53号。两品种创伤后IAA与JA极显著正相关,而IAA与SA,SA与JA在18号极显著正相关,53号极显著或显著负相关;53号TZR、Zeatin、SA间极显著或显著正相关,JA与TZR、Zeatin和SA极显著负相关。砧木茎段创伤后18号激素间为极显著或显著正相关;53号TZR和Zeatin与IAA、JA极显著正相关,与SA存在显著负相关,SA与JA有显著负相关。砧木茎段和根部间品种间仅在SA与各激素间相关性存在差异,其他激素间存在极显著正相关或负相关。综上所述,砧穗创伤后激素水平上18号在创伤面易于愈伤组织发育,而53号抗逆激素水平较高且与细胞分裂增殖类激素负相关,可能影响53号嫁接后愈合生长;嫁接应在创伤后10 min内较为适宜;砧穗间激素含量及比值的差异可能会影响后期嫁接部位形态重建以及穗条生长。     

Identification of cells in rat brain and peripheral tissues expressing mRNA for members of the nerve growth factor family

Cells expressing mRNA for hippocampus-derived neurotrophic factor (HDNF/NT-3) or brain-derived neurotrophic factor (BDNF) were identified by in situ hybridization. In the rat brain, HDNF mRNA was predominantly found in pyramidal neurons in CA1 and CA2 of the hippocampus. Lower levels of HDNF mRNA were found in granular neurons of the dentate gyrus and in neurons of the taenia tecta and induseum griseum. BDNF mRNA-expressing cells were more widely distributed in the rat brain, with high levels in neurons of CA2, CA3, and the hilar region of the dentate gyrus, in the external and internal pyramidal layers of the cerebral cortex, in the claustrum, and in one brainstem structure. Lower levels were seen in CA1 and in the granular layer of the hippocampus, in the taenia tecta, and in the mammillary complex. In peripheral tissues, HDNF mRNA was found in glomerular cells in the kidney, secretory cells in the male rat submandibular gland, and epithelial cells in secondary and tertiary follicles in the ovary. Cells expressing BDNF mRNA were found in the dorsal root ganglia, where neurons of various sizes were labeled.     

1962—2010年甘肃省黄土高原区干旱时空动态格局

借助ArcGIS 9.3和SPSS软件平台,根据甘肃省黄土高原区33个气象站1962—2010年气象资料,利用综合气象干旱指数(CI)从干旱率、干旱强度和干旱频率三方面对甘肃省黄土高原区近50年的干旱时空变化特征进行了分析。结果表明:春、秋季干旱率呈现显著增加趋势,夏、冬季干旱率呈略微增加趋势;夏季干旱频率最大,春季、秋季次之,冬季最少;春、秋季干旱以2000年来最为严重,夏季干旱以2000年以来、20世纪70年代和90年代均较严重,冬季干旱以20世纪80年代最为严重;甘肃省黄土高原区逐年干旱持续日数和干旱强度存在明显的年际波动,线性变化趋势明显;从空间分布来看,春、夏和秋季干旱多发区主要集中在甘肃省黄土高原区西北部,而106°E以西"临洮-通渭-天水"一线和庆阳东南部是干旱多发区变幅最大的地方,冬季干旱多发区主要集中在甘肃省黄土高原区南部。     

Comparative analysis of allele polymorphism of three short tandem repeats in the Russian, Uzbek and Georgian populations

The allele polymorphism of the AGC short tandem repeat (STR) of exon 1 of the androgen receptor (AR) gene located in Xq11-12, ATCT STR of intron 40 of the von Willebrand factor (vWF) gene located in chromosome 12p12, and AGAT STR of an anonymous DNA sequence (STRX1) from the short arm of the X chromosome was analyzed in the Georgian, Uzbek, and Russian populations. Polymerase chain reaction (PCR) with DNA of unrelated persons revealed 14 AR, 7 vWF, and 7 STRX1 alleles in Georgians; 14, 8, and 6 alleles, respectively, in Uzbeks; and 16, 8, and 9 alleles, respectively, in Russians. The heterozygosity at these STR was 0.61, 0.78, and 0.46 in Georgians; 0.60, 0.83, and 0.44 in Uzbeks; and 0.80, 0.70, and 0.58 in Russians. The correspondence of genotype frequencies to the Hardy-Weinberg equilibrium was observed with AR STR in Russians and Uzbeks, STRX1 STR in Georgians, and vWF in all three populations. A significant deviation from the equilibrium was found for STRX1 in Russians and Uzbeks and AR in Georgians. The potential of individualization was 0.05 for AR, 0.13 for vWF, and 0.18 for STRX1 in Georgians; 0.04, 0.09, and 0.13, respectively in Uzbeks; and 0.05, 0.14, and 0.07, respectively, in Russians. The allele and genotype frequency distributions of each STR were analyzed in all three populations. Allele frequencies in the populations were compared by the Kolmogorov-Smirnov test. The Russian population significantly differed in allele frequencies of the three STR from Uzbeks and in those of STRX1 and AR from Georgians. Georgians and Uzbeks significantly differed in vWF and STRX1 frequencies. The possibility of using the three STR in molecular diagnosis of the corresponding monogenic diseases, population genetic studies, and personal identification is discussed.     

黄土丘陵区不同植被根际土壤微量元素含量特征

为了解黄土高原不同植被土壤微量元素的根际效应,分析了该地区柠条、沙棘、沙打旺、柳枝稷、阿尔泰狗娃花和茵陈蒿6种植被根际与非根际土壤中有机碳、全氮、Mn、Cu、Fe、Zn含量.结果表明： 6种植被中,柠条、阿尔泰狗娃花和茵陈蒿根际土壤的有机碳、全氮含量高于非根际土壤;除柠条和沙棘外,其余4种植被非根际土壤pH值均显著高于根际土壤.6种植被根际土壤有效Mn含量均低于非根际;柠条、沙打旺和柳枝稷根际有效Cu含量显著高于非根际,表现出强烈根际富集现象.除沙打旺外,其他5种植被根际有效Fe含量均略高于非根际.沙打旺、柳枝稷、茵陈蒿和阿尔泰狗娃花表现出强烈的有效Zn根际富集现象.根际与非根际土壤有机碳、全氮与有效Mn、有效Zn,以及有效Mn与有效Zn呈极显著正相关.根际土壤pH值与有效Mn和有效Zn呈显著负相关.由于不同植物根系的生长特征、根际pH值及微生物种类等的差异,不同植被根际的微量元素含量不同,茵陈蒿根际4种微量元素含量高于其他植被.     

The effect of oestradiolum benzoicum and progesterone on AChE activity in the nerves of the female reproductive system of immature pigs

The present paper describes the effect of exogenous oestradiol and progesterone on the AChE activity in nerves of the ovary, oviduct, uterus, and vagina, and on morphological features of the AChE-positive nerves of these organs in sexually immature pigs. Studies were carried out on 30 sexually immature pigs, 37 to 43 kg in weight, at the age of 115 to 125 d, of the BWP (Big White Polish) race. The animals were divided into 4 groups. Group I (n = 6) constituted the control. Animals in group II (n = 8) received oestradiolum benzoicum. Those in group III (n = 8) were given progesterone, and in group IV (n = 8) oestradiol and progesterone. Oestradiol injections resulted in a 1.2-fold increase of AChE activity in the ovary, 1.3-fold in the oviduct, 1.7-fold in the uterine horn, and a 1.2-fold decrease of this activity in the cervix, while no differences were noted in the vagina. Progesterone injections did not affect AChE activity in the ovary, while a 1.1-fold increase was observed in the oviduct, 1.2-fold in the uterine horn and 1.1-fold in the cervix compared to the control. A 1.1-fold decrease of this activity was observed in the vagina. Joint injections of oestradiol and progesterone resulted in about a 1.4-fold increase of AChE activity in the ovary, 1.3-fold in the oviduct, 1.4-fold in the uterine horn, 1.6-fold in the vagina, while no changes were observed in the cervix. The results suggest the effect of the administered hormones upon AChE activity in the organs under study, mainly in the oviduct, uterine horn, and vagina. They also point to the possibility of a synergic effect of oestradiol and progesterone as regards to an increase of the activity.     

Histochemical, immunofluorescence, and ultrastructural differences in fetal cartilage among three genetically distinct chondrodystrophic mice

The severe lethal chondrodystrophies in man result in a common clinical syndrome including shortening of the face, mandible, and limbs. Studies of three lethal chondrodystrophic mutants in mice, viz., chondrodysplasia (cho), cartilage matrix deficiency (cmd), and disproportionate micromelia (Dmm), which share this syndrome, were performed with the aim of identifying histochemical, immunofluorescence, or ultrastructural differences which might exist among these hereditary cartilage disorders. We examined limb cartilage epiphyses from day 18 normal and mutant fetuses and observed repeatable, mostly qualitative differences. All observations were made relative to the normal control. Histochemical staining of matrix proteoglycan was moderately decreased in cho and Dmm cartilage and markedly decreased in cmd when compared to the normal control. Staining of matrix collagen was irregular in distribution in cho, increased in cmd, and decreased in Dmm. Immunofluorescence of proteoglycan was increased in the matrix of cho and Dmm and decreased in cmd. Immunofluorescence of type II collagen was heterogeneous and moderately decreased in the matrix of cho, increased in cmd, and markedly decreased in Dmm. Immunofluorescence of link protein in cho was localized in the cellular-pericellular region as in the normal and appeared increased in the matrix of cmd and Dmm. Immunofluorescence of chondronectin was localized in the cellular-pericellular region and appeared normal in all three mutants. Major differences in cellular and matrix ultrastructure were observed among the mutants, including a decreased frequency of small-diameter collagen fibrils in cho and Dmm, increased density of collagen fibrils in cmd, and dilated RER in Dmm. These observations demonstrate that distinct structural and possibly molecular differences exist among the chondrodystrophies. In the case of cmd, the differences correlated with a previously reported molecular defect, viz., absence of core protein of cartilage specific proteoglycan in the cartilage of this mutant. It is anticipated that the methods used in the present study can be applied to humans in case classification and in identifying potential mouse-human correlates.     

Insulin research in China and the U.K

Insulin has been extensively studied since it was discovered by Banting and Best in 1921. Early in 1934, Dorothy Crowfoot and John Desmond Bernal obtained the first X-ray diffraction photograph of an enzyme protein: pepsin. In 1935, they took another photograph of a protein hormone: insulin. The chemical structure of protein was unknown until the amino acid sequence of bovine insulin was solved by Fred Sanger and colleagues in 1955. In 1958, the chemical synthesis of bovine insulin started in China through a nationwide collaboration of three institutions: the Institute of Biochemistry in Shanghai, the Institute of Organic Chemistry in Shanghai and Beijing University. The total synthesis of bovine insulin in crystalline form was accomplished in 1965. The success of the synthesis of the first protein in vitro greatly encouraged young researchers in China. Not long afterwards, the project of structural analysis of insulin crystal was carried out in China through the collaboration of the Institute of Biophysics, the Institute of Physics and Beijing University, and succeeded in 1971. In Dorothy Hodgkin's laboratory in Oxford, X-ray diffraction studies of insulin crystals were resumed after about 30 years, and the structure of rhombohedral insulin crystal was solved in 1969. Through insulin research, the Institute of Biophysics in Beijing and the Institute of Biochemistry in Shanghai established scientific collaboration and personal friendship with Dorothy Hodgkin's laboratory in Oxford, and later Guy Dodson's laboratory in York and Tom Blundell's laboratory in London. In 1975, Dorothy Hodgkin wrote a short note, 'Chinese work on insulin' in Nature, anticipating closer scientific exchange between the East and the West. In 1982, a bilateral meeting between the Biochemical Societies in the U.K. and China was held in Oxford. Now, the second bilateral meeting held in Shanghai will further promote the collaboration between our two countries.     

Distribution of immunoreactive mesotocin and vasotocin in the brain and pituitary of chickens

The distribution of vasotocin and mesotocin in the pituitary and central nervous system in male chickens was determined using radioimmunoassays. Neither peptide was detected in the pineal. Mesotocin, but not vasotocin, was detected in the cerebellum. Both peptides were found in the septal area, archistriatum, paleostriatum, optic lobe, anterior, medial and posterior hypothalamus, midbrain, pons, medulla oblongata, and the anterior and posterior pituitary. Equal amounts of the 2 peptides were present in the septal area, archistriatum and anterior hypothalamus whereas vasotocin was more abundant (2- to 10-fold) in the paleostriatum, optic lobe, midbrain, and pituitary. The amount of mesotocin was about twice that of vasotocin in the medulla oblongata and the medial and posterior hypothalamus. The wide distribution of vasotocin and mesotocin in extrahypothalamic sites in the central nervous system suggests that the peptides may, as in mammals, have a role in a variety of autonomic and endocrine regulatory processes in chickens.     

中国细石核类型和工艺初探——兼谈与东北亚、西北美的文化联系

通过中国十个重要细石器遗址中细石核的观察,对中国细石核的类型和工艺技术作一初步的区分和综合的比较,以探讨中国细石器传统在时间和空间上的分布特点。同时与发现于东北亚、西北美的细石核进行对比,从它们之间的异同来看这一地区在文化上的传承关系。