Knots in trees – A new rich source of lignans

Recent research in our group has revealed that knots, i.e. the branch bases inside tree stems, commonly contain 5–10% (w/w) of lignans. Norway spruce (Picea abies) knots contain as much as 6–24% of lignans, with 7-hydroxymatairesinol (HMR) as the predominant (70–85%) lignan. Some other spruce species also contain HMR as the main lignan, but some spruce species have also other dominating lignans. Most fir (Abies) species contain secoisolariciresinol and lariciresinol as the main lignans. Lignans occur also in knots of pines (Pinus spp.), although in lower amounts than in spruces and firs. Scots pine (Pinus silvestris) knots were found to contain 0.4–3% of lignans with nortrachelogenin as the main lignan. Lignans have been identified also in knots of some hardwoods, although flavonoids are more abundant in hardwoods. Knots are detrimental in the manufacture of pulp and paper and should preferably be removed before pulping. This is possible using a recently developed industrially applicable process called ChipSep. Recent research has also established novel synthetic routes to several lignans, such as matairesinol, secoisolariciresinol, lariciresinol and cyclolariciresinol, starting from hydroxymatairesinol by applying fairly straight-forward chemical transformations. We conclude that wood knots in certain spruce and fir species constitute the richest known source of lignans in nature. The lignans occur in knots in free form and are easily extracted by aqueous ethanol, or even by water. Not only HMR, but also other potentially valuable lignans, could be produced in a scale of hundreds of tons per year by extraction of knots separated from wood chips at pulp and paper mills.     

Dissection of complex traits in forest trees — opportunities for marker-assisted selection

Due to their long reproductive cycles and the time to expression of mature traits, marker-assisted selection is particularly attractive for tree breeding. In this review, we discuss different approaches used for developing markers and propose a method for application of markers in low linkage disequilibrium (LD) populations. Identification of useful markers for application in tree breeding is mainly based on two approaches, quantitative trait locus (QTL) mapping and association genetic studies. While several studies have identified significant markers, effect of the individual markers is low making it difficult to utilize them in breeding programs. Recently, genomic selection (GS) was proposed for overcoming some of these difficulties. In GS, high density markers are used for predicting phenotypes from genotypes. Currently small effective populations with high LD are being tested for GS in tree breeding. For wider application, GS needs to be applied in low LD populations which are found in many tree breeding programs. Here we propose an approach in which the significant markers from association studies may be used for developing prediction models in low LD populations using the same methods as in GS. Preliminary analyses indicate that a modest numbers of markers may be sufficient for developing prediction models in low LD populations. GS based on large numbers of random markers or small numbers of associated markers is poised to make marker-assisted selection a reality in forest tree breeding.     

The hard lives of trees in African savanna—Even without elephants

The ongoing loss of large trees and densification of shrubs are two prevalent processes that take place in African savannas, with profound consequences for their structure and function. We evaluated herbivore impacts on savanna woody communities using a long-term exclosure experiment in the Kruger National Park, South Africa, with three treatments: the exclusion of large mammals only (i.e. elephant and giraffe), exclusion of all herbivores larger than a hare, and areas open to all herbivores. We asked three questions: (1) How did variable exclusion of herbivores affect woody density and structure across the catena (i.e. riparian, sodic and crest vegetation)? (2) Did the exclusion of herbivores result in unique woody species composition? (3) Did herbivore exclusion result in a higher proportion of palatable species? After 17 years, we found that herbivores mainly affected the heights and densities of existing species, rather than leading to turnover of woody species assemblages. Although densities of individuals increased in the full exclosure (350 ha⁻¹), the change was more moderate than expected. By contrast, mixed mega-and meso-herbivores decreased the number of trees and shrubs (decreases of 780 ha⁻¹) via a variety of physical impacts. Meso-herbivores alone, on the other hand, had less impact on individual density (i.e. no change), but limited average height growth and canopy dimensions in certain habitat types. Where elephants are present, they are effective at reducing the density of woody stems to the point of counteracting woody encroachment, but at the same time are actively preventing the persistence of large trees (>5 m) as well as preventing trees from recruiting to larger size classes. However, the lack of massive recruitment and woody cover increases with elephant exclusion, especially for more preferred species, suggests that factors beyond elephants, such as dispersal limitation, seed predation, and drought, are also acting upon species.     

Language trees ≠ gene trees

Darwin saw similarities between the evolution of species and the evolution of languages, and it is now widely accepted that similarities between related languages can often be interpreted in terms of a bifurcating descent history (‘phylogenesis’). Such interpretations are supported when the distributions of shared and unshared traits (for example, in terms of etymological roots for elements of basic vocabulary) are analysed using tree-building techniques and found to be well-explained by a phylogenetic model. In this article, we question the demographic assumption which is sometimes made when a tree-building approach has been taken to a set of cultures or languages, namely that the resulting tree is also representative of a bifurcating population history. Using historical census data relating to Gaelic- and English-speaking inhabitants of Sutherland (Highland Scotland), we have explored the dynamics of language death due to language shift, representing the extreme case of lack of congruence between the genetic and the culture–historical processes. Such cases highlight the important role of selective cultural migration (or shifting between branches) in determining the extinction rates of different languages on such trees.     

Does climatic warming increase the risk of frost damage in northern trees?

Abstract. The effect of climatic warming on the timing of bud burst and the subsequent risk of frost damage on trees in central Finland was assessed with the aid of a computer model, 73 years of temperature data and a climatic scenario corresponding to doubled level of atmospheric CO₂. In general, climatic warming hastened bud burst, due to ontogenetic development during warm spells in autumn, winter and spring. During the years with the warmest winters in the scenario conditions: (a) bud burst took place during mid-winter; and (2) depending on the year, the trees were subsequently exposed to temperatures between −27 and −10°C. This finding suggests that the risk of frost damage to trees will be increased if the predicted climatic warming occurs. Because of the assumptions used in the model, the results are not conclusive, but they do point out the importance of further experimental studies on genetic and environmental regulation of timing of bud burst in trees.     

A valid assessment of students’ skill in determining relationships on evolutionary trees

Background

Evolutionary trees illustrate relationships among taxa. Interpreting these relationships requires developing a set of “tree-thinking” skills that are typically included in introductory college biology courses. One of these skills is determining relationships among taxa using the most recent common ancestor, yet many students instead use one or more alternate strategies to determine relationships. Several alternate strategies have been well documented and these include using superficial similarity, proximity at the tips of a tree, or the fewest intervening nodes in the tree to group taxa.

Results

We administered interviews (n = 16) and pencil-and-paper questionnaires (n = 205), and constructed a valid and reliable assessment that measured how well students determined relationships among taxa on an evolutionary tree. Our questions asked students to consider a focal taxon and identify which of two additional taxa is most closely related to it. We paired the use of most recent common ancestor with one of three alternative strategies (i.e., similarity, proximity, or node-counting) to explicitly test students’ understanding of the relationships among the taxa on each tree.

Conclusions

Our assessment enables us to identify students who are effectively distracted by an alternative strategy, those who use the most recent common ancestor inconsistently, or who are guessing in order to determine relationships among taxa. Our 18-question tool (see Additional file 1) can be used for formative assessment of student understanding of how to interpret relationships on evolutionary trees. Because our assessment tests for the same skill throughout, students who answer incorrectly, even once, likely have an incomplete understanding of how to determine relationships on evolutionary trees and should receive follow-up instruction.

     

Do trees in urban or ornamental plantings receive more damage by insects than trees in natural forests?

Abstract.

• 1 To determine if trees in urban or ornamental plantings are more susceptible to attack and receive more damage to foliage by herbivores than trees in natural forests, we compared the amount of leaf damage caused by several guilds of insects feeding on seven species of native, broadleaf trees in two geographic locations.
• 2 Total leaf damage did not differ significantly between urban or ornamental and natural forests, although trees in natural forests tended to have slightly higher levels of leaf damage.
• 3 Damage caused by chewing insects was consistently higher on trees in natural forests than in urban or ornamental plantings. All other feeding guilds showed no consistent pattern in levels of damage between the two habitats.
• 4 Total damage levels were highest on canopy trees and lowest on understorey trees.
• 5 These results are inconsistent with the view that trees in urban or ornamental settings are more susceptible to insect attack than trees in natural forests.
• 6 The lower level of foliar damage caused by chewing insects on trees in urban or ornamental plantings may arise because of low rates of dispersal by insects into urban environments, higher levels of plant resistance to insect attack in urban or ornamental plantings, or lower survival rates of herbivorous insects in urban environments.

     

The genomics of local adaptation in trees: are we out of the woods yet?

There is substantial interest in uncovering the genetic basis of the traits underlying adaptive responses in tree species, as this information will ultimately aid conservation and industrial endeavors across populations, generations, and environments. Fundamentally, the characterization of such genetic bases is within the context of a genetic architecture, which describes the mutlidimensional relationship between genotype and phenotype through the identification of causative variants, their relative location within a genome, expression, pleiotropic effect, environmental influence, and degree of dominance, epistasis, and additivity. Here, we review theory related to polygenic local adaptation and contextualize these expectations with methods often used to uncover the genetic basis of traits important to tree conservation and industry. A broad literature survey suggests that most tree traits generally exhibit considerable heritability, that underlying quantitative genetic variation (Q_ST) is structured more so across populations than neutral expectations (F_ST) in 69% of comparisons across the literature, and that single-locus associations often exhibit small estimated per-locus effects. Together, these results suggest differential selection across populations often acts on tree phenotypes underlain by polygenic architectures consisting of numerous small to moderate effect loci. Using this synthesis, we highlight the limits of using solely single-locus approaches to describe underlying genetic architectures and close by addressing hurdles and promising alternatives towards such goals, remark upon the current state of tree genomics, and identify future directions for this field. Importantly, we argue, the success of future endeavors should not be predicated on the shortcomings of past studies and will instead be dependent upon the application of theory to empiricism, standardized reporting, centralized open-access databases, and continual input and review of the community’s research.     

Can exotic pine trees assist in restoration?

Invasive exotic woody species, including conifers escaped from plantations, are usually regarded as serious threats to native biodiversity. Becerra & Montenegro (Applied Vegetation Science, 16, 2013, 2) present an interesting example of invasive Pinus radiata facilitating native woody regeneration in semi‐arid central Chile. However, the positive value of invasive conifers for restoration and conservation will not necessarily apply in all situations.     

Root–shoot allometry of tropical forest trees determined in a large-scale aeroponic system

Background and Aims

This study is a first step in a multi-stage project aimed at determining allometric relationships among the tropical tree organs, and carbon fluxes between the various tree parts and their environment. Information on canopy–root interrelationships is needed to improve understanding of above- and below-ground processes and for modelling of the regional and global carbon cycle. Allometric relationships between the sizes of different plant parts will be determined.

Methods

Two tropical forest species were used in this study: Ceiba pentandra (kapok), a fast-growing tree native to South and Central America and to Western Africa, and Khaya anthotheca (African mahogany), a slower-growing tree native to Central and Eastern Africa. Growth and allometric parameters of 12-month-old saplings grown in a large-scale aeroponic system and in 50-L soil containers were compared. The main advantage of growing plants in aeroponics is that their root systems are fully accessible throughout the plant life, and can be fully recovered for harvesting.

Key Results

The expected differences in shoot and root size between the fast-growing C. pentandra and the slower-growing K. anthotheca were evident in both growth systems. Roots were recovered from the aeroponically grown saplings only, and their distribution among various diameter classes followed the patterns expected from the literature. Stem, branch and leaf allometric parameters were similar for saplings of each species grown in the two systems.

Conclusions

The aeroponic tree growth system can be utilized for determining the basic allometric relationships between root and shoot components of these trees, and hence can be used to study carbon allocation and fluxes of whole above- and below-ground tree parts.     

Is the lack of leguminous savanna trees in grasslands of South Africa related to nutritional constraints?

As with many grasslands globally, the Highveld grasslands of South Africa are tree-less, despite having a climate that can support tree growth. Models predict that fire maintains these grasslands. The question arises as to why fire-tolerant savanna trees do not survive in these ecosystems? Savanna tree survival in mesic areas is restricted by demographic bottlenecks, specifically limitations to sapling-escape from fire. It was hypothesised that ancient highly leached soils from grassland areas would prevent saplings from growing fast enough to escape the fire-trap. Growth rates of savanna tree seedlings (Acacia karroo Hayne and Acacia sieberiana Burtt Davy) were measured in a common garden experiment using soils from ten sites collected along a savanna-grassland continuum. Soils from grassland sites were relatively nutrient-poor compared to those from savannas with lower pH, and associated cations. A. sieberiana growth rates responded to pH and these nutrients, whereas A. karroo growth was less strongly linked to specific nutrients. Even so, both species accumulated more biomass when grown in soils from savanna sites compared to grassland sites. An exception was a low elevation low nutrient savanna site that resulted in poor growth, yet sustains high tree biomass in situ. Differences between growth in grassland and savanna soils were small. They may contribute to, but are unlikely to explain, the treeless nature of these grasslands.     

Does irrigation affect leaf phenology in deciduous and evergreen trees of the savannas of northern Australia?

Abstract Soil moisture was augmented experimentally during two successive dry seasons and the intervening wet season in a humid tropical savanna in Darwin, northern Australia. Leaf phenology was monitored in four common tree species Termmalia ferdinandiana and Planchonia careya (both deciduous species), and Eucalyptus miniata and Eucalyptus tetrodonta (both evergreen species). Irrigation produced consistently significant effects in only T. ferdinandiana. In this species leaf-flush was significantly earlier, canopy decline and leaf-fall were significantly later and the attainment of full canopy was earlier in irrigated compared with non-irrigated trees. Litterfall, and the seasonal patterns of contraction and expansion of stems (a measure of stem water status or storage) were not significantly affected by irrigation in any species. Leaf longevity in the deciduous species was 6–8 months; some eucalypt leaves lived for approximately 1 year, but none lived longer than 18 months. Irrigation had relatively little effect on leaf longevity. While variation in soil moisture is a potentially important cue to both leaf-fall and leaf-flush, stem water status and climatic factors such as vapour pressure deficit may also be important climatic cues to phenological behaviour.     

Mesoscale transect sampling of trees in the lomako–yekokora interfluvium, democratic republic of the Congo

We conducted a mesoscale transect sampling of trees 10cm DBH in the Lomako–Yekokora interfluvial forest, Democratic Republic of the Congo. Our objective was to characterize the forest landscape contained between the Lomako and Yekokora rivers in terms of its floristic composition and to investigate how representative the Lomako study site, the location of a long-term study of primates, was of the entire forest block. Fifteen transects were laid out at seven sample stations placed approximately 10km apart and alongside a 70km trail running from the Lomako study site to the margins of the Yekokora river. Three transects totaling 3.65ha were laid out at the Lomako study site and two transects totaling 2ha at each of the remaining six sample stations, amounting to 15.65ha in total. Average DBH, tree density, tree species richness and floristic composition were determined for each transect. There were 5353 trees 10cm DBH in the total sample, representing 150 species in 35 families. Caesalpinoideae trees dominated the sample followed by Olacaceae and Annonaceae. Four forest types were identified: mixed primary (57% of the sampled plots), secondary forest (9%), Gilbertiodendron (22%), and swamp (12%). The seven sample stations differed from each other in average DBH, tree density, tree species richness and floristic composition. Most of the difference, however, was due to the fact that the four forest types were not equally represented at each sample station. When forest types were contrasted independently, a marked difference in average DBH, tree density, tree species richness and floristic composition was recorded. Conversely, when only mixed primary forest was analyzed across the sample stations, no significant difference was detected except for average DBH. Thus the Lomako study site is representative of the forest landscape contained between the Lomako and Yekokora rivers only when the different forest types are treated separately. The sample stations (including Lomako) differ from each other, however, in the proportional contribution of each forest type.     

Tree development in structural soil – an empirical below-ground in-situ study of urban trees in Copenhagen,Denmark

Aims

The purpose of this study is to evaluate root and stem growth, nutrient status and soil properties of a tree planting in structural soil.

Methods

Root and stem growth were measured at an 10-year-old urban planting of Tilia x europaea L. ‘Pallida’ established in structural soil on a paved square in Copenhagen, Denmark.Root abundance was quantified and soil profiles were established at three different distances from 10 trees (1.0, 1.9, and 2.9 m). Soil and leaf samples were analysed for nutrient concentrations.

Results

Abundant root presence was measured across the entire profile of structural soil (160?×?60 cm) at all distances, provided that structural soil layers were constructed correctly. Erroneously constructed structural soil layers however, resulted in impaired tree and root growth. Coarse root morphology was affected by the confined growing space in the voids of the stone matrix. The soil was relatively alkaline with an average pH (CaCl₂) of 7.3. Foliar analysis revealed deficiencies of K and Mn. These deficiencies might be due to a combined effect of high pH and low soil concentrations of these nutrients.

Conclusions

The study documents that correctly constructed structural soils allow and encourage root growth in load bearing layers.

     

Absorptive root area and stem resistivity in whole trees of contrasting structure and size – improvement of methods

Aims

The study was focused on comparing the results of the three instrumental methods applied simultaneously for root studies in several tree species representing contrasting situations: root systems of different structure and stems of a wide range of diameters (especially when considering their resistivity). We want to learn properties of the methods, make some improvements and test their validity, before they will be applied to a large series of trees at the stand level.

Material and methods

Douglas fir (Pseudotsuga menziessii (Mirbel) Franco) with very asymmetric root system and Blue spruce (Picea pungens Engelm.) with homogeneous root system growing in the Mendel University Training Forest Enterprise in K?tiny, were selected as the main sample trees. Three variants of stem impedance measurements needed for absorptive root area estimates were applied to an additional series of over 20 trees. In order to characterize vertical and circumferential (around stem) root distribution we applied (1) the sap flow radial patterns measured by the multi-point sensors based on the heat field deformation (HFD) method, and (2) a modified earth impedance (MEI) method from the group of thermodynamic and electric measuring methods and finally we (3) almost harmlessly excavated the whole root system by supersonic air stream. Three steps of absorptive root area measurements were improved: (a) Impact of stem impedance was almost eliminated, (b) Excessive variation of stem impedance values measured too close to stems (in a place with the most heterogeneous materials) was compensated by extrapolation of several close points, (c) Impact of high curvature of small stems was determined and eliminated by an equation.

Results

All the methods gave similar results when considering differences between individual trees as well as between stem sides. Sap flow density was interesting when expressed per measured absorptive root area and leaf area. Experimental data of main and additional sample trees confirmed validity of relationship, which can be applied to improve stem resistivity especially in small trees.

Conclusions

Results indicated, that all the instrumental methods are field applicable and suitable for quantitative measurements, when specific properties of the methods and stem macrostructure are taken into account. Soil electric parameters characterize the important properties related to presence of cracks, water content, and ion concentration, which are being analyzed now.     

Are mangroves in the tropical Atlantic ripe for invasion? Exotic mangrove trees in the forests of South Florida

Two species of mangrove trees of Indo-Pacific origin have naturalized in tropical Atlantic mangrove forests in South Florida after they were planted and nurtured in botanic gardens. Two Bruguiera gymnorrhiza trees that were planted in the intertidal zone in 1940 have given rise to a population of at least 86 trees growing interspersed with native mangrove species Rhizophora mangle, Avicennia germinans and Laguncularia racemosa along 100 m of shoreline; the population is expanding at a rate of 5.6% year⁻¹. Molecular genetic analyses confirm very low genetic diversity, as expected from a population founded by two individuals. The maximum number of alleles at any locus was three, and we measured reduced heterozygosity compared to native-range populations. Lumnitzera racemosa was introduced multiple times during the 1960s and 1970s, it has spread rapidly into a forest composed of native R. mangle, A. germinans, Laguncularia racemosa and Conocarpus erectus and now occupies 60,500 m² of mangrove forest with stem densities of 24,735 ha⁻¹. We estimate the population growth rate of Lumnitzera racemosa to be between 17 and 23% year⁻¹. Populations of both species of naturalized mangroves are dominated by young individuals. Given the long life and water-dispersed nature of propagules of the two exotic species, it is likely that they have spread beyond our survey area. We argue that the species-depauperate nature of tropical Atlantic mangrove forests and close taxonomic relatives in the more species-rich Indo-Pacific region result in the susceptibility of tropical Atlantic mangrove forests to invasion by Indo-Pacific mangrove species.     

Interspecific variability of δ13C among trees in rainforests of French Guiana: functional groups and canopy integration

The interspecific variability of sunlit leaf carbon isotope composition (δ¹³C), an indicator of leaf intrinsic water-use efficiency (WUE, CO₂ assimilation rate/leaf conductance for water vapour), was investigated in canopy trees of three lowland rainforest stands in French Guiana, differing in floristic composition and in soil drainage characteristics, but subjected to similar climatic conditions. We sampled leaves with a rifle from 406 trees in total, representing 102 species. Eighteen species were common to the three stands. Mean species δ¹³C varied over a 6.0‰ range within each stand, corresponding to WUE varying over about a threefold range. Species occurring in at least two stands displayed remarkably stable δ¹³C values, suggesting a close genetic control of species δ¹³C. Marked differences in species δ¹³C values were found with respect to: (1) the leaf phenology pattern (average δ¹³C=–29.7‰ and –31.0‰ in deciduous-leaved and evergreen-leaved species, respectively), and (2) different types of shade tolerance defined by features reflecting the plasticity of growth dynamics with respect to contrasting light conditions. Heliophilic species exhibited more negative δ¹³C values (average δ¹³C=–30.5‰) (i.e. lower WUE) than hemitolerant species (–29.3‰). However, tolerant species (–31.4‰) displayed even more negative δ¹³C values than heliophilic ones. We could not provide a straightforward ecophysiological interpretation of this result. The negative relationship found between species δ¹³C and midday leaf water potential (Ψ_wm) suggests that low δ¹³C is associated with high whole tree leaf specific hydraulic conductance. Canopy carbon isotope discrimination (Δ _A ) calculated from the basal area-weighed integral of the species δ¹³C values was similar in the three stands (average Δ _A =23.1‰), despite differences in stand species composition and soil drainage type, reflecting the similar proportions of the three different shade-tolerance types among stands. Received: 30 November 1999 / Accepted: 23 March 2000