Computer simulation of the motoneuron pool–muscle complex. I. Input system and motoneuron pool

 The aim of the present study was to simulate the input system and the motoneuron (MN) pool of the MN pool–muscle complex (MNPMC). Input fibers, which can originate from command centers in the central nervous system or from sensory organs, activate the MN pool. They generate sequences of action potentials, the frequency of which is proportional to a time-dependent activation factor (which is an input to the model). Different connection patterns between the input fibers and motor units (MUs) are allowed. For simplicity and since no precise experimental data are available, 70 input fibers and 4 boutons per fiber and MN are simulated (this corresponds approximately to the monosynaptic group-Ia input of the cat medial gastrocnemius muscle). Each bouton generates the same conductance change in the postsynaptic membrane. The MNs are modeled with a single compartment and a homogenous membrane. According to experimental data, the membrane leakage conductance and capacitance are MU dependent. Since the precise relation is unknown: (a) the computed relation between MU contraction force and the MN leakage conductance was taken from a steady-state MNPMC model, and (b) the capacitance was assumed to be proportional to the leakage conductance. The MN membrane includes time- and voltage-dependent ionic channels (fast and slow K⁺ and low- and high-threshold Ca²⁺ channels). The density and time constant of the slow K⁺ channels and the density of the Ca²⁺ channels were fitted to approximate afterhyperpolarization characteristics and frequency-injected current relations of type-identified cat MNs. If the membrane reaches a voltage threshold the MNs generate action potentials, which were simulated by voltage pulses. The activation of the MN pool of the human first dorsal interosseus muscle was simulated with injected and synaptic currents in order to illustrate the size principle, synaptic noise, and other features of muscle activation. It is concluded that the present model reproduces the main properties of the input–output relations of different MN types within a muscle. Together with the simulation of the muscle force and the surface EMG, which will be published in subsequent papers, it will be a powerful tool for reproducing experiments on the motor system and investigating functional mechanisms of motor control. Received: 17 April 2001 / Accepted in revised form: 6 November 2001     

Motorneurons require cysteine string protein-α to maintain the readily releasable vesicular pool and synaptic vesicle recycling

Cysteine string protein-α (CSP-α) is a synaptic vesicle protein that prevents activity-dependent neurodegeneration by poorly understood mechanisms. We have studied the synaptic vesicle cycle at the motor nerve terminals of CSP-α knock-out mice expressing the synaptopHluorin transgene. Mutant nerve terminals fail to sustain prolonged release and the number of vesicles available to be released decreases. Strikingly, the SNARE protein SNAP-25 is dramatically reduced. In addition, endocytosis during the stimulus fails to maintain the size of the recycling synaptic vesicle pool during prolonged stimulation. Upon depolarization, the styryl dye FM?2-10 becomes trapped and poorly releasable. Consistently with the functional results, electron microscopy analysis revealed characteristic features of impaired synaptic vesicle recycling. The unexpected defect in vesicle recycling in CSP-α knock-out mice provides insights into understanding molecular mechanisms of degeneration in motor nerve terminals.     

“Chelatable iron pool”: inositol 1,2,3-trisphosphate fulfils the conditions required to be a safe cellular iron ligand

Mammalian cells contain a pool of iron that is not strongly bound to proteins, which can be detected with fluorescent chelating probes. The cellular ligands of this biologically important “chelatable”, “labile” or “transit” iron are not known. Proposed ligands are problematic, because they are saturated by magnesium under cellular conditions and/or because they are not “safe”, i.e. they allow iron to catalyse hydroxyl radical formation. Among small cellular molecules, certain inositol phosphates (InsPs) excel at complexing Fe³⁺ in such a “safe” manner in vitro. However, we previously calculated that the most abundant InsP, inositol hexakisphosphate, cannot interact with Fe³⁺ in the presence of cellular concentrations of Mg²⁺. In this work, we study the metal complexation behaviour of inositol 1,2,3-trisphosphate [Ins(1,2,3)P ₃], a cellular constituent of unknown function and the simplest InsP to display high-affinity, “safe”, iron complexation. We report thermodynamic constants for the interaction of Ins(1,2,3)P ₃ with Na⁺, K⁺, Mg²⁺, Ca²⁺, Cu²⁺, Fe²⁺ and Fe³⁺. Our calculations indicate that Ins(1,2,3)P ₃ can be expected to complex all available Fe³⁺ in a quantitative, 1:1 reaction, both in cytosol/nucleus and in acidic compartments, in which an important labile iron subpool is thought to exist. In addition, we calculate that the fluorescent iron probe calcein would strip Fe³⁺ from Ins(1,2,3)P ₃ under cellular conditions, and hence labile iron detected using this probe may include iron bound to Ins(1,2,3)P ₃. Therefore Ins(1,2,3)P ₃ is the first viable proposal for a transit iron ligand. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Do local processes scale to global patterns? The role of drought and the species pool in determining treehole insect diversity

Global patterns in community species richness may represent limitations operating at the local scale, such as competitive exclusion and habitat suitability, or, in the case of unsaturated communities, limitations to the species pool of biogeographic regions. Separating the effects of local and regional processes on community richness requires combining small-scale experiments with broad surveys. I examine limitations to the number of aquatic insect species per treehole at the scale of a single woodland, and between eight biogeographic regions. Variation in species richness at the woodland scale can largely be explained by small-scale differences between treeholes in drought disturbance, as shown for British treehole insects for 2 years. At the global scale, drought disturbance is a relatively poor predictor of patterns in the local richness of treehole mosquitoes. Instead, regional differences in the species pool explain most of the variation in local mosquito richness. Treeholes in at least the most species-poor regions appear to be unsaturated with mosquito species. In this system, therefore, local processes do not necessarily scale to global patterns.     

Acropora recruits harbor “rare” Symbiodinium in the environmental pool

Coral–algal symbioses are essential for the survival of corals. Algal endosymbionts, specifically the dinoflagellate genus Symbiodinium, are divided into several genetic clades. The composition of Symbiodinium within corals plays an important role in the tolerance and/or sensitivity of host corals to local environments, due to individual Symbiodinium-specific physiological characteristics. While the majority of gamete-spawning corals acquire Symbiodinium from the surrounding environment, little is known about whether corals specifically select or randomly acquire Symbiodinium from the environmental population. In the present study, we compared the Symbiodinium clade composition of newly recruited Acropora corals with that of the environmental pool (water column, sediments, and adult colonies). More than 90 % of recruits harbored clades A and/or D until 6 months after settlement, despite the Symbiodinium environmental pool being mainly composed of clade C (mainly ITS1 type C2), and to a lesser extent clades A and D. In addition, the environmentally dominant type C2 Symbiodinium was not detected in Acropora recruits, while a few recruits harbored ITS1 types C1 or C15. Therefore, the clade composition of recruits may not reflect the abundance/density of Symbiodinium populations in the environment. Some members of clades A and D are known to exhibit tolerance to a wide range of environments. ITS1 type C1 also exhibits greater tolerance to thermal stress compared to ITS1 type C2. These tolerance characteristics of certain Symbiodinium may be vital for the initial survival of Acropora recruits, even if these Symbiodinium are rare in the environment.     

Postnatal transformations of alveolar surfactant in the rabbit: changes in pool size,pool morphology and isoforms of the 32–38 kDa apolipoprotein

To clarify perinatal transformations of surfactant we performed lung lavage in term fetuses and in 0–24-h-old newborn rabbits. Lavage fluid was separated into three pools, namely lavage pellet, lavage supernatant and cells. We found that at birth the pellet contains 94.1 ± 1.4% (S.E.) saturated phosphatidylcholine, while the supernatant and cells contain traces of it. At birth the pellet contains secreted lamellar bodies while the supernatant lacks any recognizable structure. After birth, the alveolar saturated phosphatidylcholine level increases 5.1-times in 24 h, the proportions between pools reaching adult values in 90 min (pellet = 75.9 + 4.8%, supernatant = 22.7 ± 4.9%), and small vesicles appear in the supernatant, probably originating from the turnover of alveolar surfactant during breathing. The saturated phosphatidylcholine associated with cells remains unchanged. At birth, the 32–38 kDa surfactant apolipoprotein appears to be less extensively sialylated than in adult life.     

How can soil monitoring networks be used to improve predictions of organic carbon pool dynamics and CO2 fluxes in agricultural soils?

As regional and continental carbon balances of terrestrial ecosystems become available, it becomes clear that the soils are the largest source of uncertainty. Repeated inventories of soil organic carbon (SOC) organized in soil monitoring networks (SMN) are being implemented in a number of countries. This paper reviews the concepts and design of SMNs in ten countries, and discusses the contribution of such networks to reducing the uncertainty of soil carbon balances. Some SMNs are designed to estimate country-specific land use or management effects on SOC stocks, while others collect soil carbon and ancillary data to provide a nationally consistent assessment of soil carbon condition across the major land-use/soil type combinations. The former use a single sampling campaign of paired sites, while for the latter both systematic (usually grid based) and stratified repeated sampling campaigns (5?C10 years interval) are used with densities of one site per 10?C1,040 km². For paired sites, multiple samples at each site are taken in order to allow statistical analysis, while for the single sites, composite samples are taken. In both cases, fixed depth increments together with samples for bulk density and stone content are recommended. Samples should be archived to allow for re-measurement purposes using updated techniques. Information on land management, and where possible, land use history should be systematically recorded for each site. A case study of the agricultural frontier in Brazil is presented in which land use effect factors are calculated in order to quantify the CO₂ fluxes from national land use/management conversion matrices. Process-based SOC models can be run for the individual points of the SMN, provided detailed land management records are available. These studies are still rare, as most SMNs have been implemented recently or are in progress. Examples from the USA and Belgium show that uncertainties in SOC change range from 1.6?C6.5 Mg C ha^?1 for the prediction of SOC stock changes on individual sites to 11.72 Mg C ha^?1 or 34% of the median SOC change for soil/land use/climate units. For national SOC monitoring, stratified sampling sites appears to be the most straightforward attribution of SOC values to units with similar soil/land use/climate conditions (i.e. a spatially implicit upscaling approach).     

Mitotic control of dTTP pool: a necessity or coincidence?

The fidelity of DNA replication in eukaryotic cells requires a balanced dNTP supply in the S phase. During the cell cycle progression, the production of dTTP is highly regulated to coordinate with DNA replication. Intracellular thymidine is salvaged to dTTP by cytosolic thymidine kinase (TK1) and thymidylate kinase (TMPK), both of which expression increase in the G1/S transition and diminish in the mitotic phase via proteolytic destruction. Anaphase promoting complex/cyclosome (APC/C)-mediated ubiquitination targets TK1 and TMPK to undergo proteasomal degradation in mitosis, by which dTTP pool is minimized in the early G1 phase of the next cell cycle. In this review, we will focus on regulation of TK1 in the post-S phase and the importance of mitotic proteolysis in controlling dNTP balance, replication stress and genomic stability. Finally, we discuss how thymidine pool and oligomeric forms of TK1 can affect mitotic control of dTTP. This article is for the special issue of IMB 20^th anniversary.     

Can long-distance dispersal shape the local and regional species pool?

Long-distance dispersal events are irregular and their role in shaping plant diversity is often discussed and modeled but rarely studied experimentally. We mimicked long-distance dispersal experimentally by sowing eleven exotic and fourteen native species into a calcareous grassland community in Estonia. Exotic species were randomly chosen from the collection of 500 herbaceous species in the Botanical Garden of the Tartu University. All exotic species were able to complete their life-cycles under the climatic and edaphic conditions in the garden. Native species originated from open dry calcareous habitats in the surroundings of the study site, but did not occur in the experimental grassland. Seven exotic species and seven native species established during the first year. In the third year, there were still three exotic species with five premature individuals, and three sown native species with sixteen individuals in the plots. These results show that long-distance dispersal both within and between regions may have an impact on species composition in target plant communities. If relatively the best established exotic speciesPhyteuma scheuchzeri would be classified as casual, one may conclude that transition among introduction and casual stages corresponds to ten’ rule. The species richness of seedlings, taking both local and sown species into account, was higher in plots with higher native established plant species richness.     

Abundance�Coccupancy relationships in metapopulations: examples of rock pool Daphnia

Intraspecific positive relationships between abundance and occupancy are observed for many species, suggesting that the same processes drive local and regional species dynamics. Two main groups of mechanisms explain this relationship: spatiotemporal variation in local population growth rates due to variation in habitat quality, or dispersal effects that increase occupancy of a species when locally abundant. Several studies show that spatiotemporal variation in population growth rates causes positive abundance?Coccupancy relationships, but few have shown dispersal effects. It is believed that such effects should be more evident for species whose dispersal is limited, e.g. metapopulations, but those studies are limited. This study investigates abundance?Coccupancy relationships in three Daphnia metapopulations in rock pools and the degree to which dispersal or habitat quality affect their local abundances and occurrence. Daphnia longispina and Daphnia magna showed positive abundance?Coccupancy relationships, but not Daphnia pulex. No single ecological factor could explain the abundance?Coccupancy relationships of any given species. Instead, dispersal processes and rock pool quality (mainly salinity and depth) seem to act together to shape the abundance?Coccupancy relationships. Such a conclusion is also supported by an immigration experiment in natural rock pools. This study suggests that although positive abundance?Coccupancy relationships may be commonly found for metapopulations, both dispersal processes and variation in habitat quality can be factors determining the abundance?Coccupancy relationship of metapopulations experiencing habitat heterogeneity.     

Is replenishment of the readily releasable pool associated with vesicular movement?

At the excitatory synapse of rat hippocampus the short-term synaptic depression observed during long high-frequency stimulation is associated with slower replenishment of the readily-releasable pool. Given that the replenishment rate is also not [Ca⁺⁺]_o sensitive this puts into question a widely held notion that the vesicles—constrained by the cytoskeleton and rendered free from such constraints by Ca⁺⁺ entry that renders them more mobile—are important in the replenishment of the readily-releasable pool. This raises a question—Is vesicular replenishment of the readily releasable pool associated with significant movement? To answer this question we evaluated how okadaic acid and staurosporine (compounds known to affect vesicular mobility) influence the replenishment rate. We used patterned stimulation on the Schaffer collateral fiber pathway and recorded the excitatory post-synaptic currents (EPSCs) from rat CA1 neurons, in the absence and presence of these drugs. The parameters of a circuit model with two vesicular pools were estimated by minimizing the squared difference between the ESPC amplitudes and simulated model output. [Ca²⁺]_o did not influence the progressive decrease of the replenishment rate during long, high frequency stimulation. Okadaic acid did not significantly affect any parameters of the vesicular storage and release system, including the replenishment rate. Staurosporine reduced the replenishment coupling, but not the replenishment rate, and this is owing to the fact that it also reduces the ability of the readily releasable pool to contain quanta. Moreover, these compounds were ineffective in influencing how the replenishment rate decreases during long, high frequency stimulation. In conclusion at the excitatory synapses of rat hippocampus the replenishment of the readily releasable pool does not appear to be associated with a significant vesicular movement, and during long high frequency stimulation [Ca⁺⁺]_o does not influence the progressive decrease of vesicular replenishment.     

Dry matter partitioning in a tomato plant: one common assimilate pool?

The influence of the distance (transport resistance) betweensource and sink on dry matter distribution between fruits andvegetative parts in tomato was studied. In two glasshouse experiments,a control treatment (single-shoot plants, no truss removal)was conducted, together with two double-shoot treatments: double-shootplants with no trusses removed from one shoot and all trussesremoved at anthesis from the other shoot (100–0) and double-shootplants with every second truss removed from both shoots (50–50).Plant growth and dry matter distribution was recorded by periodicaldestructive harvests, during a period of about 100 d after anthesisof the first truss. In experiment 2, plants were probably sink-limited.At the end of both experiments, 58–60% of dry matter wasin the fruits for control plants, whereas for both double-shoottreatments this was 43% (Experiment 1) or 38% (Experiment 2).Until 60–65 d after first flowering, vegetative growthof the individual shoots in both double-shoot treatments wasthe same. Results supported the assumption of one common assimilatepool and showed no significant influence of distance (transportresistance) between source and sink on dry matter partitioning. Key words: Allocation, distance, dry matter distribution, one assimilate pool, partitioning, transport resistance, tomato     

If everything is everywhere, do they share a common gene pool?

Marine phytoplanktons are highly dispersed with large population sizes and are often considered to be homogenous over their entire range. Thus, using this definition, one would predict that everything is everywhere for these microbes. However, recent molecular analyses have shown both spatial and temporal compartmentalisation in phytoplankton communities, thus calling into question the idea that everything is everywhere, especially if they do not share a global gene pool. Examples are present to document the range of biogeography that has been reported in the phytoplankton and a hypothesis as to how this relates to species evolution on a geological time scale is provided.     

Does seasonality and pool connectivity influence fish trophic ecology in knickzone habitats?

Knickzones are large rock outcrops found in upstream and middle plateau river basins. This kind of geological formation, which is considered a macrohabitat, creates a complex of mesohabitats: pools, riffles and runs, with distinct characteristics. In the present work, the aim was to evaluate the influence of connectivity and seasonality on the trophic structure of the ichthyofauna found in knickzone pools. Fish were sampled in four connected and three isolated pools, during dry and rainy seasons, and the stomach contents of 20 species were analyzed. Seasonal differences in diet occurred, with greater contribution of algae and aquatic hexapod in the dry season and of plant fragments and organic matter in the rainy season. The high diet overlap found in the isolated pools may be related to more intensive biotic interactions among individuals confined in physically restricted habitats. Seasonality in combination with connectivity to the main channel influenced the trophic structure of fish assemblage in the knickzone. Knickzones dynamics are modulated by seasonal events, such as floods, and connectivity of habitats, being extremely important for the trophic interactions between species. Alterations to these dynamics, like the construction of hydroelectric power plants, can modify significantly the trophic ecology of knickzones.     

Structure and floristic composition of the Heard Island “pool complex” community

Summary The stratigraphy, hydrology and vegetation of the Heard Island (sub-Antarctic; 53°05S, 73°30E) pool complex bogs are described. Spatial variation in processes that might have contributed to their formation are discussed. This community occurs where drainage is impeded. with Callitriche antarctica being the indicator species. Particular attention is paid to the interaction of the vegetation, pools and animals. Surface stratigraphy, peat depth, water depth and vegetation composition were measured along transect lines. Species cover abundance data of 300 quadrats were classified using a two-way indicator species analysis program and ordinated using detrended correspondence analysis. The major factors determining vegetation composition were found to be peat depth, surface topography, and the degree and type of animal disturbance. Similarities between the pool complexes on Heard Island and corresponding bogs in Tasmania, and the northern hemisphere temperate and boreal zones appear to diminish as the density of the animals occupying this habitat increases.     

The role of growth rate, redox-state of the plastoquinone pool and the trans-thylakoid ΔpH in photoacclimation of Chlorella vulgaris to growth irradiance and temperature

The long-term photoacclimation of Chlorella vulgaris Beijer (UTEX 265) to growth irradiance and growth temperature under ambient CO₂ conditions was examined. While cultures grew at a faster rate at 27 than at 5 °C, growth rates appeared to be independent of irradiance. Decreases in light-harvesting polypeptide accumulation, increases in xanthophyll pool size and changes in the epoxidation state of the xanthophyll cycle pigments were correlated linearly with increases in the relative reduction state of Q_A, the primary quinone receptor of photosystem II, when estimated as 1−q_P under steady-state growth conditions. However, we show that there is also a specific temperature-dependent component, in addition to the redox-state of the Q_A, involved in regulating the content and composition of light-harvesting complex II of C. vulgaris. In contrast, modulation of the epoxidation state of the xanthophyll pool in response to increased 1−q_P in cells grown at 5 °C was indistinguishable from that of cells grown at 27 °C, indicating that light and temperature interact in a similar way to regulate xanthophyll cycle activity in C. vulgaris. Because C. vulgaris exhibited a low-light phenotype in the presence of 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), but a high-light phenotype upon addition of 2,5-dibromo-6-isopropyl-3-methyl-1,4-benzoquinone, we conclude that the plastoquinone pool acts as a sensor regulating the accumulation of light-harvesting polypeptides in C. vulgaris. However, concomitant measurements of non-photochemical fluorescence quenching (q_N) and the epoxidation state of the xanthophyll pool appear to indicate that, in addition to the redox-state of the plastoquinone pool, the trans-thylakoid ΔpH may also contribute to sensing changes in irradiance and temperature that would lead to over-excitation of the photosynthetic apparatus. We suggest that sink capacity as reflected in photosynthate utilization and cell growth ultimately regulate photoacclimation in C. vulgaris. Received: 17 April 2000 / Accepted: 23 May 2000     

Species–area relationships arise from interaction of habitat heterogeneity and species pool

Species–area relationships (SARs) represent a ubiquitous and useful empirical regularity characterizing biodiversity. The rate of species accumulation, captured by the value of the exponent, z, varies substantially and for many reasons. We hypothesized that one of the major contributors to this variation is heterogeneity and its change with scale. To test this hypothesis, we used an array of natural microcosms for which we had invertebrate species composition and physical properties of habitat. Using GIS and cluster analysis, we organized the species data into four sets: communities grouped by spatial proximity in the field, randomly, by similarity of their physical habitat and by dissimilarity of their physical habitat. These groupings produced varying levels of heterogeneity at different scales. We fitted species–area and species–volume relationships to the four groups of communities, and obtained z-values for each group or a portion of the group if the slope of the relationship varied. As predicted, we recovered a number of properties reported by others. More interestingly, we found that small- and large-scale habitat heterogeneity produced scale-dependent z-values while the random grouping of pool habitats produced z-values more robust across scales but also susceptible to initial values of habitat richness. Habitat area affected rate at which species accumulated much less than the mean degree of inter-habitat differences: increasing area that is heterogeneous at broader scales produces higher z-values than increasing an area that shows heterogeneity at small scale only. Our results, while from a microcosm system, rely on logic transferable to larger scale data sets.     

β-Actin specifically controls cell growth, migration, and the G-actin pool

Ubiquitously expressed β-actin and γ-actin isoforms play critical roles in most cellular processes; however, their unique contributions are not well understood. We generated whole-body β-actin-knockout (Actb(-/-)) mice and demonstrated that β-actin is required for early embryonic development. Lethality of Actb(-/-) embryos correlated with severe growth impairment and migration defects in β-actin-knockout primary mouse embryonic fibroblasts (MEFs) that were not observed in γ-actin-null MEFs. Migration defects were associated with reduced membrane protrusion dynamics and increased focal adhesions. We also identified migration defects upon conditional ablation of β-actin in highly motile T cells. Of great interest, ablation of β-actin altered the ratio of globular actin (G-actin) to filamentous actin in MEFs, with corresponding changes in expression of genes that regulate the cell cycle and motility. These data support an essential role for β-actin in regulating cell migration and gene expression through control of the cellular G-actin pool.     

The gene pool of the Belgorod oblast population: Malecot’s isolation-by-distance parameters

The mean distance between birthplaces of spouses (σ, σ′), the proportion of medium migrations (k), and the effective migration pressure (M _e) have considerably increased, and the linear systematic pressure coefficient (b) has decreased in the human population of the Central Chernozem region during the past 50 years. However, the local inbreeding level (a), which is determined by both an increase in the migration intensity and a decrease in the effective population size (N _e), has remained practically unchanged. A change in the regional administrative structure has affected the genetic structure of populations. In the 1950s, raions (administrative districts) of Kursk and Voronezh oblasts (regions) were similar with respect differentiation parameters, whereas the oblasts considerably differed from each other. At present, some Malecot’s isolation-by-distance parameters for the populations of the districts that were included to Belgorod oblast in 1954 are lower and similar to those for the districts that remain in Kursk and Voronezh oblasts.