Cytogenetic examination of early embryonic development in the white grouper Epinephelus aeneus (Pisces, Serranidae)

Cytogenetic examination of early embryogenesis of the white grouper Epinephelus aeneus (Pisces, Serranidae) was conducted. All progeny from different spawnings showed various types of chromosomal aberration. Proportions of genetically abnormal embryos carrying different types of chromosomal aberrations varied significantly with specific spawning of parental fish, and ranged between 35.5 and 79%. Although the data can only be regarded as suggestive, we do, however, propose that chromosomal disorders might be considered as one of the particular genetic factors affecting survival during embryonic and early developmental stages.     

Length–weight relationships for six fish species in Iskenderun Bay (Eastern Mediterranean Sea coast of Turkey)

The length–weight relationships (LWRs) were estimated for six non‐indigenous fish species, namely, Apogon smithi (Kotthaus, 1970); Ostorhinchus fasciatus (White, 1790); Pomadasys stridens (Forsskål, 1775); Champsodon capensis Regan, 1908; Torquigener flavimaculosus Hardy & Randall, 1983; and Tylerius spinosissimus (Regan, 1908) from Iskenderun Bay, eastern Mediterranean Sea. Their length–weight relationship b values ranged from 2.902 to 3.501, and all regressions were found to be significant for all six species (P < 0.001). This study is the first reference on length–weight relationships for these six non‐indigenous fish species from the Eastern Mediterranean Sea coast of Turkey.     

A first north-eastern Atlantic record of the bluefish Pomatomus saltatrix (L. 1758), (fam. Pomatomidae)

The capture of a specimen of the bluefish– Pomatomus saltatrix , (L. 1758) off Ballycotton, Co. Cork, Ireland (Lat. 8°W, Long. 51°50'N) is reported. Some diagnostic features and measurements of the specimen are given. This would appear to be the first record of the species for the Eastern Atlantic, north of Spain.     

Growth characteristics of Uranoscopus scaber Linnaeus 1758, inhabiting the Iskenderun Bay (Northeastern Mediterranean)

This study aimed to determine the age and some growth characteristics of Atlantic stargazer (Uranoscopus scaber) from Iskenderun Bay (Northeastern Mediterranean). For this purpose, a total of 150 Atlantic stargazer ranging in size from 9.1 to 28.0 cm in total length (weight: 11.7–345.7 g) were collected as by-catch from a commercial trawl fishing boat at a depth of 80–100 m between May 2015 and January 2016. The bottom trawl gear used was equipped with a 44 mm stretched mesh size net at the cod-end. The percentage of females and males were 46.7% and 53.3% respectively. The total length–weight relationships equation with coefficient of determination (R²) were found as W = 0.011*TL^3.131, R² = .9728, for all individuals, W = 0.015*TL^3.021, R² = .9512 for females and W = 0.0102*TL^3.136, R² = .9553 for males. By using the von Bertalanffy equation, the growth parameters of Atlantic stargazer were estimated to be L_∞ = 42.35 cm, k = 0.098, t₀ = −1.8474 for all individuals; L_∞ = 36.92 cm, k = 0.138, t₀ = −1.2693 for females and L_∞ = 38.77 cm, k = 0.1, t₀ = −2.334 for males. In this study, age reading was done by two independent readers and index of average percentage error (IAPE) was calculated as 6.1%. The highest condition factor value calculated as 1.81 in the age group 6 and the lowest condition factor value was calculated as 1.48 in the age group 1.     

Weight–length relationships for 20 Lessepsian fish species caught by bottom trawl on the coast of Iskenderun Bay (NE Mediterranean Sea, Turkey)

Weight–length relationships were estimated for 20 Lessepsian fish species of the Iskenderun Bay, namely, Apogon nigripinnis , Apogon queketti , Callionymus flamentosus , Cynoglossus sinusarabici , Dussumieria elopsoides , Etrumeus teres , Fistularia commersonii , Lagocephalus spadiceus , Lagocephalus suezensis , Leiognathus kluzingeri , Nemipterus japonicus , Oxyurichthys petersenii , Saurida undosquamis , Sillago sihama , Siganus luridus , Siganus rivulatus , Sphyraena chroysotaeina , Stephanolepis diaspros , Upeneus moluccensis and Upeneus pori . All regressions were found to be significant for all species. This study presents the first estimation of weight–length relationships for six species ( A. queketti , E. teres , F. commersonii , L. suezensis , Nemipterus randalli , and S. luridus ) inhabiting coastal areas of the northeastern Mediterranean Sea.     

A chromosome-level genome assembly of the potato grouper (Epinephelus tukula)

The potato grouper, Epinephelus tukula, is one of the largest coral reef teleost, and it is an important germplasm resource for selection and cross breeding. Here we report a potato grouper genome assembly generated using PacBio long-read sequencing, Illumina sequencing and high-throughput chromatin conformation capture (Hi-C) technology. The genome size was 1.13 Gb, with a total of 508 contigs anchored into 24 chromosomes. The scaffold N50 was 42.65 Mb. For the genome models, our assembled genome contained 98.11% complete BUSCO with the vertebrata_odb9 database. One more copies of Gh and Hsp90b1 were identified in the E. tukula genome, which might contribute to its fast growth and high resistance to stress. In addition, 435 putative antimicrobial peptide (AMP) genes were identified in the potato grouper. This study provides a good reference for whole genome selective breeding of the potato grouper and for future development of novel marine drugs.     

A set of 16 consensus primer pairs amplifying the complete mitochondrial genomes of orange-spotted grouper (Epinephelus coioides) and Hong Kong grouper (Epinephelus akaara)

Groupers are of considerable economic value; however, their classification and evolutionary relationships have long been hindered by the overwhelming number of species and lack of morphological specializations. Mitochondrial genome is a source of original markers that are potentially useful in the study of phylogeny and population genetics of groupers. We describe a set of 16 new primer pairs that allow PCR amplification of the entire mitochondrial genomes of orange-spotted grouper and Hong Kong grouper. This primer set has been defined for consensus over eight other grouper species, facilitating further studies on the molecular evolution and population genetics of groupers.     

First record of Unicapsula seriolae (Myxozoa: Multivalvulida) from the muscle of Malabar grouper Epinephelus malabaricus in Japan

Unicapsula seriolae (Myxozoa; Multivalvulida) was found in the trunk muscle of Malabar grouper Epinephelus malabaricus caught off Wakayama Prefecture, Japan. Numerous filamentous or sesamoid brown to black lesions were observed in the skeletal muscle. Histopathological observation indicated that the lesions were myxosporean plasmodia encapsulated by a fibrous layer, accompanied by melanin deposition. Spores having one large and two rudimentary polar capsules were subspherical in shape and 6.6 × 6.9 μm in size. Scanning electron microscopy revealed that spores were composed of three spore valves. Morphological characteristics were consistent with U. seriolae, which is reported to cause myoliquefaction in yellowtail kingfish Seriola lalandi in Australia. Molecular analysis of the SSU and LSU rDNA supported identification of the species as U. seriolae. This is the first report of Unicapsula in Japan.     

Otolith chemistry of Champsodon nudivittis (Ogilby, 1895) and Nemipterus randalli (Russell, 1986) in Iskenderun Bay,Turkey

The study objective was to investigate the chemical composition of otoliths of two Lessepsian fish migrants, namely, Champsodon nudivittis and Nemipterus randalli, which thrive in the Iskenderun Bay, Turkey. The study specifically investigated the age structure and explored differences in chemical otolith composition in relation to age. Samples were collected using a traditional Mediterranean bottom trawl (mesh size 44 mm) at depths of 45 to 90 m. A total of 78 Champsodon nudivittis (size range, 6.0 to 14.0 cm) and 60 Nemipterus randalli (size range, 6.1 to 17 cm) were captured in May 2012. Age readings were carried out (sectioning technique). Additionally, the concentrations of Na, K, Li, and Ca were determined using flame photospectrometry. The results revealed that the concentrations of Na (5.70 mg/g) and K (4.45 mg/g) in otoliths of Nemipterus randalli were predominant elements after Ca (128.71 mg/g). The concentration of Li in otoliths was also statistically different in the two species. This study contributes to the knowledge of the otolith chemistry in the two Lessepsian fish species now living in the same (but new) geographical region.     

Growth and mortality of the brushtooth lizardfish (Saurida undosquamis) in Iskenderun Bay (eastern Mediterranean Sea) using length frequency analysis

The growth and mortality of brushtooth lizardfish Saurida undosquamis (Richardson, 1848) in Iskenderun Bay (eastern Mediterranean Sea) were investigated based on length frequency data using the fisat software. Total length of the sampled 4711 fish ranged from 6.0 to 39.0 cm. The von Bertalanffy growth function estimates were L_∞ = 42.00 cm, k = 0.51 year^‐1, t₀ = −0.29 years. Total mortality rate (Z) was computed as 1.76 year^‐1 and the exploitation ratio was 0.51, indicating that the brushtooth lizardfish stock is on the verge being overfished.     

Female reproductive pattern of Callinectes sapidus Rathbun, 1896 (Brachyura: Portunidae) in Iskenderun Bay,Eastern Mediterranean

We studied the female reproductive pattern of Callinectes sapidus, which was introduced to the Mediterranean in the 20^th century. We assessed female size at first maturity, fecundity, and fecundity relationship to size in Iskenderun Bay, eastern Mediterranean, Turkey. Samples were collected between July 2014 and June 2015 using bottom trawling at depths ranging from 1 to 50 m. A total of 322 crabs were caught of which 308 (95.7%) were females including 116 ovigerous ones. The minimum carapace width of the mature females was 39.1 mm and the mean carapace width 123.8 mm. The carapace width of ovigerous females varied between 95.1 and 144.5 mm, with a mean of 120.3 mm. The highest number of ovigerous females was observed in July and August. Mean fecundity was 1.91 million (667,950–4,669,853) eggs per female. A weak positive linear relationship between fecundity and carapace width was noted, as well as a high correlation with total egg weight. In the eastern Mediterranean, maturity sizes of females were smaller than those in the native region of the species.     

Age and growth of the blackchin guitarfish Glaucostegus cemiculus (Geoffroy Saint-Hilaire, 1817) from Iskenderun Bay (Northeastern Mediterranean)

Between September 2010 and June 2012, a total 291 (166 females and 125 males) blackchin guitarfish Glaucostegus cemiculus were captured by a commercial bottom trawler (F/V Coşkun Reis) in Iskenderun Bay, Turkey (northeastern Mediterranean Sea). The total length (L) and total weight (W) of the female and male guitarfish ranged between 32.0–165.0 cm and 88 g–16.68 kg, and 34.3–128.3 cm and 112 g–6.00 kg, respectively. Vertebral age estimates ranged from 0 to 8 years for females and 0 to 5 years for males. The growth models of von Bertanlanffy and Gompertz were fitted to the length at age data using the nonlinear regression method. Model selection was based on the values of the residual standard error and the Akaike's information criterion corrected for small sample size (AIC_C) associated with each fit. The von Bertalanffy growth model provided the best fitting growth curves for each sex with parameters reaching L_∞ = 187.17 cm, K = 0.195 year^-1, t₀ = −1.38 year for females, and L_∞ = 144.85 cm, K = 0.321 year^-1, t₀ = −1.13 year^-1 for males. The W–L relationship parameters did not differ significantly between sexes, the estimated values of a and b were 0.0018 and 3.11, respectively. By using these values of a and b, and also respective estimates of L_∞, the values of W_∞ were obtained as 20.53 kg for females and 9.25 kg for males. The overall percentage ratios of females and males in the samples were 57% and 43% respectively.     

斜带石斑鱼淋巴器官个体发育的组织学

本文应用连续组织切片技术和组织学观察,对出膜后1～60天的斜带石斑鱼(Epinephelus coioides)各期仔鱼、稚鱼和幼鱼的淋巴器官组织进行了研究,描述了淋巴器官的个体发育过程和组织学结构特征。研究表明：实验水温为22．0～27．8℃时,孵化后第10天出现头肾原基。头肾原基由未分化的造血干细胞组成。随着鱼体的生长,头肾原基的造血干细胞很快分化成不同类型的细胞;头肾主要由网状内皮系统支持下的淋巴造血组织构成。第11天出现脾脏原基。脾脏原基由造血细胞组成,淋巴化速度相对较慢。脾脏在整个发育过程中,红细胞和类红细胞占优势,没有红髓和白髓之分。第13天出现胸腺原基。胸腺发育速度较快,是明显的淋巴器官。胸腺主要由胸腺细胞(淋巴细胞)和上皮细胞组成,外区和内区没有明显的界限,但很容易区分。胸腺外被单层的上皮细胞层与咽腔相隔,保持浅表的位置,并且在整个发育过程中,胸腺与头肾是独立分开的。免疫器官原基出现顺序是头肾、脾脏和胸腺;而免疫器官淋巴化的顺序是胸腺,头肾和脾脏。和其它硬骨鱼类一样,斜带石斑鱼在早期发育阶段,淋巴器官的发育较迟,出现相对滞后的现象[动物学报49(6)：819～828,2003]。     

A new species of grouper,Epinephelus craigi (Perciformes: Epinephelidae), from the South China Sea

Ichthyological Research - A new species of grouper, Epinephelus craigi. sp. nov., from the South China Sea is described from 17 specimens (104–250&nbsp;mm SL). The new species is...     

A genome-wide association study on growth traits in orangespotted grouper(Epinephelus coioides) with RAD-seq genotyping

The orange-spotted grouper, Epinephelus coioides, is one of the most popular fish in China and Southeast Asian countries because of its important economic value. However, molecular mechanism underlying the growth of orange-spotted grouper has never been fully understood. Herein, we performed a genome-wide association study(GWAS) on a natural population of 198 individuals aiming to screen the whole genome of orange-spotted grouper for identification of growth-related loci by restrictionsite associated DNA sequencing. In this research, 261,366 single nucleotide polymorphisms(SNPs) were developed, in which110 SNPs were identified to be correlated with growth and 20 SNPs were further confirmed to be associated with both body weight and total length. From these identified SNPs, we annotated a total of 34 genes, including adgrb2, csnkza1, cers5, col22 a1,creb5, dnd1, dzank1, dnai1, npy2 r, fat3, lrrk2, lrp5, map3 k9, and so on. Among these candidate genes, npy2 r(neuropeptide Y receptor Y2) was reported to play a critical role in growth of the orange-spotted grouper. In addition, population structure,principal component analysis, kinship matrix and linkage disequilibrium were examined to verify the accuracy and reliability of our GWAS results. Our data will also provide a valuable genetic resource for further marker-assisted selection program to improve growth quality in groupers.     

The rate and causes of the loss of gill and trammel nets in Iskenderun Bay (north‐eastern Mediterranean)

The aim of this study was to detect the rate and causes of loss of shrimp trammel nets, sole trammel nets and other gill and trammel nets during one fishing season in Iskenderun Bay, Turkey. Interviews with the captains of 127 fishing boats between November 2007 and November 2008 revealed the average effective loss rate per fishing boat for shrimp trammel nets, sole trammel nets and other gill and trammel nets as 4.33 ± 0.54, 5.35 ± 0.89 and 3.33 ± 0.34 panels, respectively, with a total loss of 723, 636 and 663 panels, respectively. The most common reason for shrimp and sole trammel net loss was conflict with other fishing gear; bad weather conditions were also reported as important reasons for losses of other gill and trammel nets.