Community dynamics of intertidal soft-bottom mussel beds over two decades

Macrozoobenthos communities in the North Sea showed pronounced changes over the past decade in relation to an increasing number of invasive species and climate change. We analysed data sets spanning 22 years on abundance, biomass and species composition of intertidal soft bottom mussel beds near the island of Sylt (German Bight) in the Northern Wadden Sea, based on surveys from 1983/1984, 1990, 1993 and from 1999 to 2005. Mussel bed area and blue mussel biomass decreased, and a change in the dominance structure in the associated community comparing 1984 to mid-1990s with the period from 1999 to 2005 was observed. Coverage of the mussel beds with the algae Fucus vesiculosus decreased since the end of the 1990s. Within the study period biomass and densities of the associated community increased significantly. Dominance structure changed mainly because of increasing abundances of associated epibenthic taxa. Apart from the Pacific oyster Crassostrea gigas all other alien species were already present in the area during the study period. Community changes already started before Pacific oysters became abundant. An attempt is made to evaluate effects on the observed changes of decreasing mussel biomass, ageing of mussel beds, decreasing fucoid coverage and increasing abundances of invader. All four factors are assumed to contribute to changing community structure of intertidal mussel beds.     

Changes in the composition of British butterfly assemblages over two decades

Changes in the abundance and distribution of individual species have been widely documented in Britain and other countries in recent decades, but little has been done to determine changes in community composition over broad geographic areas. Here, we studied species turnover in 51 butterfly assemblages in Britain since 1976, examining extinction and colonisation events together with variation in the abundances of the species. We showed that the species turnover that occurred over 20 years in Britain was associated with colonisation and extinction events and also with variability in the abundance of the species. These changes in community composition differed according to the habitat requirements of the species and their previous distributions, being more evident for habitat specialists and for southerly distributed species. Colonising species often became abundant components of the communities they joined, although this was more evident for generalist than for specialist species. The abundance of species following their arrival, increased with time since colonisation. Species turnover associated with southerly species expanding northwards is consistent with being a response to climate change. The results suggest that climate- and habitat-driven changes in the identity and abundance of species within communities are widespread, and probably ubiquitous. Similar changes are likely to be occurring in other groups of organisms that are similarly undertaking major range shifts associated with climate change.     

Semantic communication in birds: evidence from field research over the past two decades

What do animal signals mean? This is a central question in studies on animal communication. Research into the semantics of animal signals began in 1980, with evidence that alarm calls of a non-human primate designated predators as external referents. These studies have challenged the historical assumption that such referential signaling is a unique feature of human language and produced a paradigm shift in animal communication research. Over the past two decades, an increasing number of field studies have revealed similar complexity in anti-predator communication of birds. The acoustic structures of avian alarm calls show a high degree of variation in pitch, duration, shape, and repetition rate. In addition to such distinct and graded variations, several birds combine discrete types of notes or calls into higher complex sequences. These variations in alarm calls are typically associated with the predator’s attributes, such as predator type and distance, and receivers respond to them with appropriate anti-predator behaviors. Although alarm calls of several bird species, as well as those of monkeys, appear to denote predator attributes, almost nothing is known about the cognitive processes that underlie the production and perception of these signals. In this review, I explore the existing evidence for referential signaling in birds and highlight the importance of the cognitive approach to animal communication research. I hope this review will promote further investigations of alarm-calling behavior in birds and will help enhance our understanding of the ecology and evolution of semantic communication.     

Sea-surface temperature and thermal stress in the Coral Triangle over the past two decades

Increasing ocean temperature has become one of the major concerns in recent times with reports of various related ecological impacts becoming commonplace. One of the more notable is the increased frequency of mass coral bleaching worldwide. This study focuses on the Coral Triangle region and utilizes the National Oceanic and Atmospheric Administration-Coral Reef Watch (NOAA-CRW) satellite-derived sea surface temperature (SST) and Degree Heating Weeks (DHW) products to investigate changes in the thermal regime of the Coral Triangle waters between 1985 and 2006. Results show an upward trend in SST during this period with an average rate of 0.2°C/decade. However, warming within this region is not uniform, and the waters of the northern and eastern parts of the Coral Triangle are warming fastest. Areas in the eastern part have experienced more thermal stress events, and these stress events appear to be more likely during a La Niña.     

The fish assemblage of the Mondego estuary: composition,structure and trends over the past two decades

The fish assemblage of the Mondego estuary was studied from June 2003 to May 2004. Five areas with different environmental conditions were sampled monthly, using a 2 m beam trawl (5 mm mesh size at the cod end). To complement information, sampling was also performed, seasonally, using a 7 m otter trawl with a 10 mm mesh size. Thirty-two species were identified. Dicentrarchus labrax, Pomatoschistus microps, Pomatoschistus minutus, Solea solea, Platichthys flesus and Diplodus vulgaris were the most abundant species. Marine juvenile migrants had the highest number of species, thirteen, followed by estuarine residents with eight species. Marine species that use the estuary as nursery grounds were the most abundant in terms of density and biomass. In spring and summer, juveniles occur in the upper, oligohaline areas, but afterwards, in autumn and winter, they tend to disperse to the middle and lower areas, with higher marine influence. Comparing the results obtained in this study with those reported in the early 1990’s, a marked decrease in species richness can be noticed, which is probably due to anthropogenic factors, namely an increase in depth of the main channel and intense euthrophication processes in the middle and upper areas.     

Expanding hybrid zone between Solea aegyptiaca and Solea senegalensis: genetic evidence over two decades

Several marine hybrid zones have been described and studied during the last years. Assessing the movements of extending hybrid zones is central to improve our understanding of evolutionary processes. We have re-examined the hybrid zone between Solea aegyptiaca and Solea senegalensis that was first described 22 years ago in northern Tunisia when introgressed S. senegalensis individuals were found in the Gulf of Tunis, whereas locally caught S. aegyptiaca were genetically pure. Six population samples harvested both inside and outside the area where the two fish species coexist were genotyped for allozymes and exon-primed intron length polymorphism. Both types of markers were congruent and revealed that introgression takes place indeed in both directions. A high introgression level (36.4%) in the Bizerta lagoon and much less outside indicate that this is the main area where hybridization occurs while introgression clines towards the south in S. aegyptiaca and towards the north in S. senegalensis plead in favour of the existence of a unimodal hybrid zone. The higher introgression level calculated in the current study (when compared to 16% reported formerly) and the newly found introgressed S. aegyptiaca in Bizerta lagoon seem to indicate that the genetic exchanges occurring between the two taxa are evolving and not stabilized yet.     

Temporal dynamics and variation of multilocus ISSR-PCR DNA markers in the Uman' population of Drosophila melanogaster over two decades (1984-2004)

The temporal dynamics of genomic variation in the Uman' (Ukraine) population of Drosophila melanogaster over the period 1984-2004 was studied using multilocus ISSR markers. Considerable polymorphism of the genomic DNA fragments corresponding to ISSR markers was found in the D. melanogaster population studied: the values of average heterozygosity varied from 0.085 to 0.127 depending on the year. Significant differences in the frequencies of dominant alleles between the samples of different years were recorded for 12 of the 30 DNA fractions detected. These changes are nondirectional and random. The pattern of detected variation suggests the determining influence of gene drift and migration process on the variation of noncoding DNA sequences in the Uman' population of D. melanogaster.     

Increase in soil organic carbon stock over the last two decades in China's Jiangsu Province

Estimates of regional and national topsoil soil organic carbon (SOC) stock change may help evaluating the soil role in mitigation of greenhouse gas (GHG) emissions through carbon (C) sequestration in soils. However, understanding of the exact mitigation role is often constrained by the uncertainty of the stock estimation associated with different methodologies. In this paper, a soil database of topsoil (0–20 cm) SOC measurements of Jiangsu Province, China, obtained from a soil survey in 1982, and from a geological survey in 2004, was used to analyze the variability of topsoil SOC among soil groups and among soil regions, and to estimate the change in SOC stocks that have occurred in the province over the last two decades. The soil survey data was obtained from measurements of 662 690 randomly collected samples, while the geological survey data was from 24 167 samples taken using a 2 km × 2 km grid. Statistical analysis was conducted on SOC values for 1982 and 2004 for different categories of soil groups, soil regions, and administrative municipalities, respectively. Topsoil SOC storage was then calculated and the provincial topsoil SOC stock was estimated for each sampling time. There were remarkable differences in SOC levels between soil groups and soil regions and different municipalities. The grid sampling with the geological survey in 2004 yielded smaller variability of topsoil SOC averages, both with soil groups and with soil spatial distribution than the random sampling method used in 1982. Variation of SOC was greater with soil groups than with soil regions in both sampling times, although it was less variable across soil taxonomic categories than within a spatial category. Little variance of the SOC level with soil groups could be explained by clay content. However, the prevalence of paddy fields in the total cropland area governed the regional and municipal average SOC levels. The average provincial topsoil SOC content increased from 9.45 g kg⁻¹ in 1982 to 10.9 g kg⁻¹ in 2004, and the total provincial topsoil SOC stock was enhanced from 149.0±58.1 Tg C in 1982 to 173.2±51.4 Tg C in 2004, corresponding to a provincial average SOC sequestration rate of 0.16±0.09 t C ha⁻¹ yr⁻¹. The SOC sequestration trend for the last two decades could be, in part, attributed to the enhanced agricultural production, symbolized by the grain yield per hectare. The results of SOC stock changes suggest a significant C sequestration in soils of Jiangsu, China, during 1980–2000, with paddy management playing an important role in regional SOC storage and sequestration capacity.     

过去二十年贵州黑叶猴分布与种群动态及致危因子分析(英文)

本文通过整理相关文献与政府报告数据并结合我们在贵州的最新调查与监测数据,总结过去20年间黑叶猴在贵州的分布、种群变动及其所面临的主要威胁,并在此基础上提出相关的保护管理建议。贵州黑叶猴野生种群在过去20年间增长了约10%～20%:从20世纪90年代的约109群1000只增加到现在的约132～137群1160～1200只。但同期黑叶猴已从5个原有的分布点绝迹,现仅存于大沙河、柏箐、麻阳河、宽阔水和野钟等5个保护区,总面积约912km2。现有的5个隔离分布点保存有全球黑叶猴野生种群(1800～2000)的约62%,是黑叶猴物种保存的最关键地区,并应该给于保护管理的优先考虑。偷猎压力在贵州相对较小:在过去的20年间仅有3次偷猎的官方记录。黑叶猴在贵州所面临的主要威胁是栖息地的丧失与退化。其主要表现形式有:以农作物和烟草种植为目的的耕地扩大,以做饭、取暖以及烟叶烘烤为目的的薪材需求,以及家畜(主要是山羊)的过度放牧。     

Sighting frequency decreases over two decades in three populations of Testudo hermanni from central Italy

Sighting frequency of tortoises (Testudo hermanni), standardized by the number of person-hours of field effort, was studied between 1992 and 2013 at three different study areas in central Italy. Although the frequency of tortoise sightings fluctuated substantially across years and among study areas, there was a significant declining trend in all the three areas, with GLM analyses showing also a significant interaction between study area and sampling year. The decreasing trend was higher in Castel Fusano than in the other two sites, with yearly frequency of sightings being independent of search effort in all of the study areas. These trends may indicate population declines, because no other explanations seem plausible. Total rainfall from previous autumn to the study period was positively correlated to tortoise sightings in only one locality. The yearly frequency of sightings of juvenile tortoises did not vary significantly among study areas and across years, thus indicating that simple differences in detectability cannot explain the observed patterns. Summer fires and forest overgrowing seem to explain the tortoise decline in two study areas (Castel Fusano and Oriolo) whereas we were not able to identify any specific reason for tortoise decline in the third study area (Manziana).     

Plasmid rolling-circle replication: highlights of two decades of research

This review provides a historical perspective of the major findings that contributed to our current understanding of plasmid rolling-circle (RC) replication. Rolling-circle-replicating (RCR) plasmids were discovered approximately 20 years ago. The first of the RCR plasmids to be identified were native to Gram-positive bacteria, but later such plasmids were also identified in Gram-negative bacteria and in archaea. Further studies revealed mechanistic similarities in the replication of RCR plasmids and the single-stranded DNA bacteriophages of Escherichia coli, although there were important differences as well. Three important elements, a gene encoding the initiator protein, the double strand origin, and the single strand origin, are contained in all RCR plasmids. The initiator proteins typically contain a domain involved in their sequence-specific binding to the double strand origin and a domain that nicks within the double strand origin and generates the primer for DNA replication. The double strand origins include the start-site of leading strand synthesis and contain sequences that are bound and nicked by the initiator proteins. The single strand origins are required for synthesis of the lagging strand of RCR plasmids. The single strand origins are non-coding regions that are strand-specific, and contain extensive secondary structures. This minireview will highlight the major findings in the study of plasmid RC replication over the past twenty years. Regulation of replication of RCR plasmids will not be included since it is the subject of another review.     

近20年来张掖绿洲农田与草地斑块动态

应用GIS技术分析了1985-2006年张掖绿洲农田和草地的斑块动态特征.结果表明:1985-2006年,农田以未变斑块和延展斑块为优势斑块类型,草地的优势斑块则为未变斑块和收缩斑块.农田和草地斑块动态格局的共同点是:未变斑块平均斑块面积都最大,分别为214.64和149.50 hm2;斑块数量和斑块类型形状指数较小,在景观上聚集程度较高,呈集中连片分布.新生斑块的斑块类型形状指数最低,分别为23.88和15.58,在景观上呈聚集分布.农田和草地斑块动态格局的不同点是:农田景观以小斑块在原来斑块基础上的延展为主,草地景观则以原生斑块的收缩为主.从斑块的来源和去向看,近20年来张掖绿洲农田、草地和戈壁(基底)斑块间存在强烈的相互转化,人口增长、水资源约束、经济发展能力和气候变化等是主要驱动力.     

Animal pharming,two decades on

Since its inception 20 years ago, the animal pharming industry has promoted transgenic animals as a cost-effective method of biopharmaceutical production. However, it took until 2006 for the first therapeutic product to gain regulatory approval. This was an important milestone, but scepticism still abounds. Can pharming regain investor confidence, and will society accept transgenic livestock as a production method? There is some cause for optimism, biopharmaceuticals are a large, expanding market and animal pharming has already made considerable strides. A novel production platform has been established, groundbreaking technologies developed, a necessary regulatory framework put in place. Nevertheless, despite cost advantages, pharming has become a niche production method and its long term success may depend on products unique to transgenic animals.     

Camptothecin, over four decades of surprising findings

Camptothecin (CPT) is a modified monoterpene indole alkaloid produced by Camptotheca acuminata (Nyssaceae), Nothapodytes foetida, Pyrenacantha klaineana, Merrilliodendron megacarpum (Icacinaceae), Ophiorrhiza pumila (Rubiaceae), Ervatamia heyneana (Apocynaceae) and Mostuea brunonis (Gelsemiaceae), species belonging to unrelated orders of angiosperms. From the distribution of CPT and other secondary metabolites, it has been postulated that the genes encoding enzymes involved in their biosynthesis evolved early during evolution. These genes were presumably not lost during evolution but might have been "switched off" during a certain period of time and "switched on" again at some later point. The CPT derivatives, irinotecan and topotecan, are used throughout the world for the treatment of various cancers, and over a dozen more CPT analogues are currently at various stages of clinical development. The worldwide market size of irinotecan/topotecan in 2002 was estimated at about $750 million and at $1 billion by 2003. In spite of the rapid growth of the market, CPT is still harvested by extraction from bark and seeds of C. acuminata and N. foetida. All parts of C. acuminata contain some CPT, although the highest level is found in young leaves (approximately 4-5 mg g(-1) dry weight), approximately 50% higher than in seeds and 250% higher than in bark. The development of hairy root cultures of O. pumila and C. acuminata, and the cloning and characterization of genes encoding key enzymes of the pathway leading to CPT formation in plants has opened new possibilities to propose alternative and more sustainable production systems for this important alkaloid.     

Analysis of the dynamics of typho-paratyphoid infection morbidity over the years in the USSR]

Statistical materials of recording the number of patients and of the typhoid-paratyphoid infections morbidity level in Russia and the USSR from 1891 to 1976 was studied. A stable tendency to reduction of this morbidity was noted. In analysing the empirical and flattened--by 3 and 5 points--curves of the number of patients and the morbidity level a regularity of declining morbidity rises was revealed. Elevation periodicity persisted, despite the reduction of morbidity level. The mean duration of the whole cycle constituted 12 years. The period of increasing morbidity from minimal to maximal in each cycle constituted 4 years, and of the declination period--8 years. Formalized empirical series of the number of patients and of the morbidity level deviated from 1908 to 1956 not more than by 1 year from the formalized basic curve. Cyclic changes of typhoid-paratyphoid infections morbidity should be taken into consideration in determining the efficacy of prophylatic measures, particularly of mass vaccination.     

Environmental change over two decades since dredging and excavation of the lower Boro River, Okavango Delta, Botswana

The Okavango Delta, southern Africa's largest wetland, is situated on the fringe of the semi-arid Kalahari Desert. It is a large alluvial fan, occupying a graben structure which is an extension of the East African Rift system. Of the 16 km³ of water which enters the Delta each year, 96% is lost to the atmosphere by evapotranspiration, 2% to groundwater and only 2% leaves as surface flow. In order to increase surface outflow to meet human needs, the distal Boro channel–floodplain system was dredged, excavated and bunded between 1971 and 1974. The immediate impact of these measures was the destruction of in-channel flora. After 20 years, the aquatic flora has recovered in the excavated channel. However, little recovery has occurred along the channel reach which was dredged. Moreover, there has been significant encroachment of terrestrial species onto the floodplain in the region of the dredged channel. In addition, dredging created a nick point which has been migrating upstream by headward erosion since dredging ceased. The average rate of advance of the nick point has been about 500 m per year. Incision associated with nick point migration has produced a channel which is indistinguishable in form from the dredged channel and, like the dredged channel, is almost completely devoid of in-channel aquatic flora. The adverse environmental impact of dredging has therefore continued to propagate in an upstream direction, although the height of the nick point has decreased, suggesting a natural attenuation process. This is likely to result in eventual elimination of the nick point.     

Androgen and estrogen dynamics: stability over a two year interval in peri-menopausal women

As part of a study on hormones and bone density in peri-menopausal women, metabolic clearance rates (MCR), and interconversions of androgens and estrogens and the peripheral aromatization of androgens were measured twice 2 yr apart. Measurements of clearance rates and interconversions were made from blood samples obtained during constant infusions of [3H]androgens and [14C]estrogens. Measurements of peripheral aromatization were made from the estrogen glucuronides in a pooled 4-day urine collection timed from the start of the infusions. The women were divided into 3 groups: Group A (n = 15) were having menstrual cycles throughout the 2 yr interval; Group B (n = 11) were having menstrual cycles at the time of Study 1 but had been amenorrheic for at least 1 yr at the time of Study 2; Group C (n = 28) were amenorrheic for at least 1 yr at the time of Study 1 and had remained amenorrheic through Study 2. The MCRs for testosterone, androstenedione, estrone and estradiol were not different for Study 1 and Study 2 in any of the groups. The interconversions of the androgens were similar in both studies for all groups. The conversion of estrone to estradiol decreased in Group A, otherwise the interconversions of the estrogens did not vary between the studies for the other groups. The peripheral aromatization of androstenedione, but not of testosterone, was significantly greater at study 2 compared to Study 1 for all groups. We conclude that the MCRs and interconversions of androgens and of estrogens are stable over time, but that the peripheral aromatization of androstenedione increases over a 2 yr interval. This increase may be menopausal and/or age related.