Micromycetes as deterioration agents of polymeric materials

Long-term field investigations on fungal deterioration covering about 250 multi-componental materials of different chemical composition were carried out at the biological station at Juodkrante (Neringa, Lithuania) on the Curonian Spit. The materials were exposed under three conditions with or without the limitation of natural climatic factors. It was found that deterioration of polymeric materials depended greatly on their composition and surface properties, as well as on the exposure conditions and their duration. The most resistant materials to fungal growth were homogeneous films, and among the more susceptible substrates were materials containing additives. Materials which were exposed to the open air were damaged more than those kept in a cellar and in specially constructed shelters. The most frequently isolated micromycetes from the surfaces of deteriorated materials surface were Aureobasidium pullulans, Aspergillus niger, A. versicolor, Cladosporium cladosporioides, Paecilomyces sulphurellus, Trichoderma viride, Ulocladium atrum and some Penicillium spp.     

Applied microbiology and biotechnology in the conservation of stone cultural heritage materials

The contribution of applied microbiology and biotechnology for the preservation and restoration of culturally relevant stoneworks has been used only to a minor extent. Until recently it only involved the identification of the living organisms accountable for the deterioration of those materials by classic phenotypic identification methods. This seems to be changing, given the amount of work recently published that focuses in the introduction of molecular-based techniques for the detection of microorganisms in historic stone. Such techniques complement and expand the information up till now gathered by conventional identification methods. Along with this, efforts are being made to develop and implement bio-based methodologies that may actively contribute to the bioremediation of weathered historic stoneworks. The present mini-review aims to provide an overview of recent findings on these matters.     

In situ bioremediation using biosurfactant produced by solid state fermentation

The discovery that certain microorganisms, living within a marine environment, can actually degrade components of oil, has made possible the utilization of biological methods for the treatment of oil spills. A biosurfactant accelerates the process of degradation of pollutant composites. The objective of this work was to study the bioremediation in situ of a diesel oil spill by utilizing a biosurfactant produced through fermentation and then compare it with chemical remediation. The quantification and identification of hydrocarbons were carried out by the process of gas chromatography. The soil indigenous microorganisms were monitored. The experiment with biosurfactant reached reductions of 99% of the aliphatic hydrocarbons, while that of the chemical disperser experiment reached a maximum of 90% reduction in 180 days. In 15 days the biosurfactant removed 77% of the aliphatic hydrocarbons, the diesel oil experiment 8.7% and the chemical disperser only 5%. The biosurfactant was 99% effective for the removal of aromatic polycyclic hydrocarbons, up to 3 rings.     

Micromycetes as colonizers of mineral building materials in historic monuments and museums

Complex of microfungi colonizing mineral building materials, i.e. limestone and plaster, in interiors of cultural heritage was characterized. Wide-scale investigation was carried out with fourteen objects studied. We have revealed a specific culturable community. We have analyzed role of obtained microfungi in biodeterioraton process on the basis of our tests (pH and water activity preferences, ability to solubilize CaCO₃) and literature data (substrate preferences and enzyme activities). The species most actively developing in mineral materials in indoor environments were Acremonium charticola, Acremonium furcatum, Lecanicillium sp., Parengyodontium album, Purpureocillium lilacinum and Sarocladium kiliense. Considering this fact and their ability to develop successfully at extremely wide range of pH values from slightly acidic to alkaline ones and their high enzymatic activities we conclude that the listed species are of high interest in seeking the cause of biodeterioration. These species can actively develop in materials penetrating for years deep into the substrates and causing their deterioration in conditions of considerably heightened moisture content. In this group, A. charticola and Lecanicillium sp. were able to solubilize CaCO₃.     

Biodeterioration of historic stained glasses from the Cartuja de Miraflores (Spain)

Glass samples obtained from five stained glass windows located on the northern side of the Cartuja de Miraflores Monastery (Burgos, Spain) were characterized using UV/Vis spectrophotometry, X-ray fluorescence, optical microscopy, field emission scanning electron microscopy and energy dispersive X-ray microanalysis. Every sample presented evidence of strong superficial deterioration. In general, the external sides of the glass fragments showed a worse state of conservation than did the internal ones. The superficial morphology of the glass exhibited numerous alterations, forming strongly adhered crusts of variable extension and colour, depending on the sample. On the external sides of the glass samples, heterogeneous, dark brown and interconnected crusts, covering most of the glass surfaces, appeared, together with craters and pits filled with whitish deposits. The internal sides showed small craters and pits and a slight accumulation of corrosion deposits. Microbial colonization on this historic glass was observed and both bacteria and fungi were characterized by molecular methods using polymer chain reaction and denaturing gradient gel electrophoresis (PCR-DGGE), complemented with cloning and sequencing of the PCR amplified products. Molecular characterization of the microflora colonizing the glass showed the presence of Eukaryotic genera such as the fungus Aspergillus and the stramenopile Labyrinthula, as well as an associated bacterial community.     

An Evaluation of Soil Colonisation Potential of Selected Fungi and their Production of Ligninolytic Enzymes for Use in Soil Bioremediation Applications

Initially sixteen fungi were screened for potential ligninolytic activity using decolourisation of a polymeric dye Poly R-478. From this, four fungi were selected, Trametes versicolor, Pleurotus ostreatus, Collybia sp., and an isolate (identified as Rhizoctonia solani) isolated from a grassland soil. Differences in the ligninolytic enzyme profiles of each of the fungi were observed. All of the four fungi tested produced MnP and laccase while the Collybia sp. and R. solani produced LiP in addition. Enzyme activity levels also varied greatly over the 21 days of testing with T. versicolor producing levels of MnP and laccase three to four times greater than the other fungi. The four fungi were then tested for their ability to colonise sand, peat (forest) and basalt and marl mixed till (field) soils through visual measurement and biomass detection in soil microcosms. Trametes versicolor and the Collybia sp. failed to grow in any of the non-sterilised soils whereas the R. solani and P. ostreatus isolates grew satisfactorily. Primers were␣designed to detect MnP and laccase genes in P.␣ostreatus and RTPCR was used to detect that these genes are expressed in forest and field soils.     

Fungal diversity and deterioration in mummified woods from the ad Astra Ice Cap region in the Canadian High Arctic

Non-permineralized or mummified ancient wood found within proglacial soil near the ad Astra Ice Cap (81°N, 76°W), Ellesmere Island, Canada was investigated to ascertain the identification of the trees, current morphological and chemical characteristics of the woods and the fungi within them. These woods, identified as Betula, Larix, Picea and Pinus, were found with varying states of physical and chemical degradation. Modern microbial decomposition caused by soft rot fungi was evident and rDNA sequencing of fungi obtained from the samples revealed several species including Cadophora sp., Exophiala sp., Phialocephala sp., as well as others. Analytical ¹³C-labeled tetramethylammonium hydroxide thermochemolysis showed the lignin from the ancient wood was in a high degree of preservation with minor side chain alteration and little to no demethylation or ring hydroxylation. The exposure of these ancient woods to the young soils, where woody debris is not usually prevalent, provides carbon and nutrients into the polar environment that are captured and utilized by unique decay fungi at this Arctic site.     

Bioremediation of PAH-contaminated soil with fungi – From laboratory to field scale

The purpose of this study was to develop a fungal bioremediation method that could be used for soils heavily contaminated with persistent organic compounds, such as polyaromatic hydrocarbons (PAHs). Sawmill soil, contaminated with PAHs, was mixed with composted green waste (1:1) and incubated with or without fungal inoculum. The treatments were performed at the laboratory and field scales. In the laboratory scale treatment (starting concentration 3500 mg kg⁻¹, sum of 16 PAH) the high molecular weight PAHs were degraded significantly more in the fungal-inoculated microcosms than in the uninoculated ones. In the microcosms inoculated with Phanerochaete velutina, 96% of 4-ring PAHs and 39% of 5- and 6-ring PAHs were removed in three months. In the uninoculated microcosms, 55% of 4-ring PAHs and only 7% of 5- and 6-ring PAHs were degraded. However, during the field scale (2 t) experiment at lower starting concentration (1400 mg kg⁻¹, sum of 16 PAH) the % degradation was similar in both the P. velutina-inoculated and the uninoculated treatments: 94% of the 16 PAHs were degraded in three months. In the field scale experiment the copy number of gram-positive bacteria PAH-ring hydroxylating dioxygenase genes was found to increase 1000 fold, indicating that bacterial PAH degradation also played an important role.     

The current and future applications of microorganism in the bioremediation of cyanide contamination

Inorganic cyanide and nitrile compounds are distributed widely in the environment, chiefly as a result of anthropogenic activity but also through cyanide synthesis by a range of organisms including higher plants, fungi and bacteria. The major source of cyanide in soil and water is through the discharge of effluents containing a variety of inorganic cyanide and nitriles. Here the fate of cyanide compounds in soil and water is reviewed, identifying those factors that affect their persistence and which determine whether they are amenable to biological degradation. The exploitation of cyanides by a variety of taxa, as a mechanism to avoid predation or to inhibit competitors has led to the evolution in many organisms of enzymes that catalyse degradation of a range of cyanide compounds. Microorganisms expressing pathways involved in cyanide degradation are briefly reviewed and the current applications of bacteria and fungi in the biodegradation of cyanide contamination in the field are discussed. Finally, recent advances that offer an insight into the potential of microbial systems for the bioremediation of cyanide compounds under a range of environmental conditions are identified, and the future potential of these technologies for the treatment of cyanide pollution is discussed.     

Microbial Life in the Underworld: Biogenicity in Secondary Mineral Formations

One unresolved issue in geomicrobiology is the involvement of microbial activity in the formation of secondary mineral deposits, or speleothems, in caves. Although there is extensive literature demonstrating the importance of bacteria in the precipitation of calcite in noncave environments, the role that these organisms play within caves remains unclear. Evidence in support of microbial involvement in deposition of speleothems has often not been compelling. Following the "Rules for the Hunt" first proposed by Schopf and Walter to determine whether structures in rock were biogenic in origin, we propose a similar set of guidelines for evaluation of microbial association with cave features. We also illustrate methods that may help unravel the complex problem of microorganism involvement in secondary mineral deposition in caves.     

Atrazine degradation by aerobic microorganisms isolated from the rhizosphere of sweet flag (Acorus calamus L.)

In presented study the capability of microorganisms isolated from the rhizosphere of sweet flag (Acorus calamus) to the atrazine degradation was assessed. Following isolation of the microorganisms counts of psychrophilic bacteria, mesophilic bacteria and fungi were determined. Isolated microorganisms were screened in terms of their ability to decompose a triazine herbicide, atrazine. Our results demonstrate that within the rhizosphere of sweet flag there were 3.8 × 10⁷ cfu of psychrophilic bacteria, 1.8 × 10⁷ cfu of mesophilic bacteria, and 6 × 10⁵ cfu of fungi per 1 g of dry root mass. These microorganisms were represented by more than 20 different strains, and at the first step these strains were grown for 5 days in the presence of atrazine at a concentration of 5 mg/l. In terms of the effect of this trial culture, the bacteria reduced the level of atrazine by an average of about 2–20%, but the average level of reduction by fungi was in the range 18–60%. The most active strains involved in atrazine reduction were then selected and identified. These strains were classified as Stenotrophomonas maltophilia, Bacillus licheniformis, Bacillus megaterium, Rahnella aquatilis (three strains), Umbelopsis isabellina, Volutella ciliata and Botrytis cinerea. Culturing of the microorganisms for a longer time resulted in high atrazine degradation level. The highest degradation level was observed at atrazine concentrations of 5 mg/l for S. maltophilia (83.5% after 15 days of culture) and for Botrytis sp. (82% after 21 days of culture). Our results indicate that microorganisms of the sweet flag rhizosphere can play an important role in the bioremediation of atrazine-contaminated sites.     

草酸脱羧酶及其应用

草酸脱羧酶是一种含锰的酶,在白腐菌中广泛存在,少数低等真菌和细菌中也能产生。目前,至少10多种草酸脱羧酶得到了分离和纯化。该酶是一种氨基酸残基在379个左右的单体酶,一般都为酸性糖蛋白,含有2个锰离子,形成2个活性区域;表面一些氨基酸被不同程度地糖基化。晶体结构和其它一些波谱学研究解释了其空间结构和可能的电子传递机制。运用PCR技术和cDNA文库技术,越来越多的草酸脱羧酶基因被克隆。已研究的该酶基因中都含有17个左右的内含子,这些内含子在活性域位置上有比较高的保守性。一些特殊氨基酸序列的存在决定了该酶的表达形式为诱导型,菌株的基因调控序列中含有一段受草酸化合物作用的序列。该酶在一些酵母和植物等异源表达系统中有成功表达的报道。该酶的应用主要集中在以下几方面：造纸废水中的草酸盐降解;食品中的草酸降解;草酸生物检测（如,临床诊断）等。     

Microbial degradation and deterioration of polyethylene – A review

The ability of microorganisms to use polyethylene as a carbon source has only been recently established. This result has significance both from an environmental point of view, due to the accumulation of millions of tons of waste plastics every year, but also regarding the conservation of integrity for infrastructures incorporating this plastic. A number of microorganisms with the ability to grow on polyethylene have been isolated. The effects of these microorganisms on the physiochemical properties of this polymer have been described; these include changes in crystallinity, molecular weight, topography of samples and the functional groups found on the surface. Although the bio-degradation and bio-deterioration of polyethylene has been demonstrated by several researchers, the enzymes involved and mechanisms associated with these phenomena are still unclear. Nevertheless, it is recognized that both enzymatic and abiotic factors (such UV light) can mediate the initial oxidation of polyethylene chains, and given the chemical similarity between polyethylene and olefins it has been suggested that the metabolic pathways for degradation of hydrocarbons can be used once the size of polyethylene molecules decrease to an acceptable range for enzyme action (typically from 10 to 50 carbons). The long-range structure and morphology of polyethylene have shown important roles, with amorphous regions being more prone to microbial attack than crystalline ones. This review focuses on the recent hypotheses and experimental findings regarding the biodegradation of polyethylene.     

Vibrio vulnificus may produce a metalloprotease causing an edematous skin lesion in vivo

Abstract Oxalate decarboxylase was detected both intra- and extracellularly in liquid cultures of Coriolus versicolor . Induction of the enzyme by addition of oxalic acid to the medium on day 6 of growth resulted in a 50-fold increase in specific activity in the mycelia and a 30-fold increase in the extracellular specific activity in the media. The protein was isolated and purified from mycelia, and characterised by polyacrylamide gel electrophoresis and Western blotting against a polyclonal antibody raised to oxalate decarboxylase from Collybia velutipes (Basidiomycete). A major protein band of M _r 59000 cross-reacted with the antibody. Immunogold-cytochemical labelling of ultra-thin sections of beechwood infected with C. versicolor showed that the enzyme was localised close to the plasma membrane and in intracellular vesicles.     

Bristle-like fungal colonizers on the stone walls of the Kitora and Takamatsuzuka Tumuli are identified as Kendrickiella phycomyces

Using an integrated analysis of phenotypic and genotypic characterizations, a total of 18 isolates of “bristle-like” fungal colonizers of the Kitora and Takamatsuzuka Tumuli, which had been provisionally identified as Phialocephala phycomyces, were here determined to be Kendrickiella phycomyces (Auersw.) K. Jacobs & M. J. Wingf. The 18 isolates consisted of 10 from stone surfaces or viscous gels (biofilms) of the stone chamber interior and adjacent small room, and air in the adjacent small room of the Kitora Tumulus, and 8 from viscous gels on the stone surfaces of the stone chamber interior, plant roots, and soil in the adjacent space or stone wall interspaces (interstices) in the stone chamber of the Takamatsuzuka Tumulus. Plaster and stone walls in both tumuli were recorded as novel substrates of this fungus. Our 18S sequence-based phylogeny indicated that K. phycomyces and species of the leotiomycetous anamorph genera Chaetomella, Pilidium, Sphaerographium, and Synchaetomella formed a monophyletic lineage distant from the core taxa of the Leotiomycetes (Pezizomycotina, Ascomycota). The relationship between the physicochemical characteristics of these isolates on GYC agar plates, i.e., soluble brownish pigments and dissolution of calcium carbonate (CaCO₃), and the biodeterioration of the plaster and plaster walls of both tumuli, are briefly discussed.     

Accelerated weathering and biodegradation of E-glass polyester composites

Successful material performance of composites depends on the environmental conditions to which they are exposed. Biological factors in aquatic environments may accelerate material deterioration. Simultaneously, leached constituents can adversely affect the surrounding ecosystem. An accelerated weathering was used to demonstrate the ease of coupon biodeterioration. In 3 months, 21 mg l⁻¹ of organics were leached, aquatic bacteria numbers increased by 43%, and biofilm growth was accelerated. Degradability of leached compounds was tested in experiments with water collected from the accelerated weathered coupons and a synthetic leachate. The first experiment verified isophthalaldehyde as a polyester biodegradation byproduct. Although the rate of biodegradation was twice that of the abiotic system, microbial numbers had reduced from 5.0×10⁷ to 5.4×10⁴ CFU l⁻¹. Synthetic resin experiments showed that the bacteria were able to use the resin as a carbon source. However, compound toxicity prevented exponential growth of the bacteria.