The Early Ediacaran Caveasphaera Foreshadows the Evolutionary Origin of Animal-like Embryology

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Unraveling the Entry Mechanism of Baculoviruses and Its Evolutionary Implications

The entry of baculovirus budded virus into host cells is mediated by two distinct types of envelope fusion proteins (EFPs), GP64 and F protein. Phylogenetic analysis suggested that F proteins were ancestral baculovirus EFPs, whereas GP64 was acquired by progenitor group I alphabaculovirus more recently and may have stimulated the formation of the group I lineage. This study was designed to experimentally recapitulate a possible major step in the evolution of baculoviruses. We demonstrated that the infectivity of an F-null group II alphabaculovirus (Helicoverpa armigera nucleopolyhedrovirus [HearNPV]) can be functionally rescued by coinsertion of GP64 along with the nonfusogenic F^def (furin site mutated HaF) from HearNPV. Interestingly, HearNPV enters cells by endocytosis and, less efficiently, by direct membrane fusion at low pH. However, this recombinant HearNPV coexpressing F^def and GP64 mimicked group I virus not only in its EFP composition but also in its abilities to enter host cells via low-pH-triggered direct fusion pathway. Neutralization assays indicated that the nonfusogenic F proteins contribute mainly to binding to susceptible cells, while GP64 contributes to fusion. Coinsertion of GP64 with an F-like protein (Ac23) from group I virus led to efficient rescue of an F-null group II virus. In summary, these recombinant viruses and their entry modes are considered to resemble an evolutionary event of the acquisition of GP64 by an ancestral group I virus and subsequent adaptive inactivation of the original F protein. The study described here provides the first experimental evidence to support the hypothesis of the evolution of baculovirus EFPs.     

Energy Content of Antarctic Mesopelagic Fishes: Implications for the Marine Food Web

For a better understanding of the role of mesopelagic fish in the Southern Ocean food web, the energy and water content of Bathylagus antarcticus, Electrona antarctica and Gymnoscopelus braueri from the Lazarev Sea were investigated. Mean dry weight energy content of B. antarcticus (20.4 kJ g⁻¹) was significantly lower than in E. antarctica and G. braueri (both 29.4 kJ g⁻¹). In E. antarctica, an increase of dry weight energy density with age was evident from 26.9 kJ g⁻¹ in juveniles of less than 1 year of age to 32.0 kJ g⁻¹ in 3-year-old fish. Water content decreased with size in all three species. Abundant high-energy species such as E. antarctica are at a key position in the food web. Due to a marked influence of age on energy content, population structure can be an important variable in estimates of energy fluxes in the Southern Ocean ecosystem.     

Climate Change and Trophic Response of the Antarctic Bottom Fauna

Background

As Earth warms, temperate and subpolar marine species will increasingly shift their geographic ranges poleward. The endemic shelf fauna of Antarctica is especially vulnerable to climate-mediated biological invasions because cold temperatures currently exclude the durophagous (shell-breaking) predators that structure shallow-benthic communities elsewhere.

Methodology/Principal Findings

We used the Eocene fossil record from Seymour Island, Antarctic Peninsula, to project specifically how global warming will reorganize the nearshore benthos of Antarctica. A long-term cooling trend, which began with a sharp temperature drop ∼41 Ma (million years ago), eliminated durophagous predators—teleosts (modern bony fish), decapod crustaceans (crabs and lobsters) and almost all neoselachian elasmobranchs (modern sharks and rays)—from Antarctic nearshore waters after the Eocene. Even prior to those extinctions, durophagous predators became less active as coastal sea temperatures declined from 41 Ma to the end of the Eocene, ∼33.5 Ma. In response, dense populations of suspension-feeding ophiuroids and crinoids abruptly appeared. Dense aggregations of brachiopods transcended the cooling event with no apparent change in predation pressure, nor were there changes in the frequency of shell-drilling predation on venerid bivalves.

Conclusions/Significance

Rapid warming in the Southern Ocean is now removing the physiological barriers to shell-breaking predators, and crabs are returning to the Antarctic Peninsula. Over the coming decades to centuries, we predict a rapid reversal of the Eocene trends. Increasing predation will reduce or eliminate extant dense populations of suspension-feeding echinoderms from nearshore habitats along the Peninsula while brachiopods will continue to form large populations, and the intensity of shell-drilling predation on infaunal bivalves will not change appreciably. In time the ecological effects of global warming could spread to other portions of the Antarctic coast. The differential responses of faunal components will reduce the endemic character of Antarctic subtidal communities, homogenizing them with nearshore communities at lower latitudes.     

Ancient Origin of the Modern Deep-Sea Fauna

The origin and possible antiquity of the spectacularly diverse modern deep-sea fauna has been debated since the beginning of deep-sea research in the mid-nineteenth century. Recent hypotheses, based on biogeographic patterns and molecular clock estimates, support a latest Mesozoic or early Cenozoic date for the origin of key groups of the present deep-sea fauna (echinoids, octopods). This relatively young age is consistent with hypotheses that argue for extensive extinction during Jurassic and Cretaceous Oceanic Anoxic Events (OAEs) and the mid-Cenozoic cooling of deep-water masses, implying repeated re-colonization by immigration of taxa from shallow-water habitats. Here we report on a well-preserved echinoderm assemblage from deep-sea (1000–1500 m paleodepth) sediments of the NE-Atlantic of Early Cretaceous age (114 Ma). The assemblage is strikingly similar to that of extant bathyal echinoderm communities in composition, including families and genera found exclusively in modern deep-sea habitats. A number of taxa found in the assemblage have no fossil record at shelf depths postdating the assemblage, which precludes the possibility of deep-sea recolonization from shallow habitats following episodic extinction at least for those groups. Our discovery provides the first key fossil evidence that a significant part of the modern deep-sea fauna is considerably older than previously assumed. As a consequence, most major paleoceanographic events had far less impact on the diversity of deep-sea faunas than has been implied. It also suggests that deep-sea biota are more resilient to extinction events than shallow-water forms, and that the unusual deep-sea environment, indeed, provides evolutionary stability which is very rarely punctuated on macroevolutionary time scales.     

单细胞真核生物的miRNA系统及其进化意义

miRNA 系统在高等多细胞真核生物中得到了广泛深入的研究。近年来,人们在单细胞真核生物上的miRNA研究也取得了重要进展。这不仅丰富了人们对miRNA在整个生物界中的认识,更重要的是对于揭示miRNA这一表达调节系统是如何在生物界中起源进化的问题具有重要意义。该文结合作者在最低等单细胞真核生物——贾第虫上的研究结果,对该领域的研究进展作一概述,并对有关miRNA这一系统的起源进化问题进行了探讨。     

Potential Germline Competition in Animals and Its Evolutionary Implications

Mutation, mitotic crossing over and mitotic gene conversion can create genetic diversity in otherwise uniform diploid cell lineages. In the germline this diversification may result in competition between diploid germline phenotypes, with subsequent biases in the frequency of alleles transmitted to the offspring. Sperm competition is a well documented feature of many higher organisms and a model is developed to quantify this process. Competition, and hence selection, can also occur by differential survival of diploid lineages before meiosis. It is concluded that under certain circumstances germline selection is an efficient means of eliminating unfavorable alleles from the population. This does not require differences in adult fertility or viability which is the usual mechanism cited as causing changes in gene frequency in a population. It is proposed that such competition may play a role in maintaining the efficiency of basic metabolic pathways.     

Unique Dental Morphology of Homo floresiensis and Its Evolutionary Implications

Homo floresiensis is an extinct, diminutive hominin species discovered in the Late Pleistocene deposits of Liang Bua cave, Flores, eastern Indonesia. The nature and evolutionary origins of H. floresiensis’ unique physical characters have been intensively debated. Based on extensive comparisons using linear metric analyses, crown contour analyses, and other trait-by-trait morphological comparisons, we report here that the dental remains from multiple individuals indicate that H. floresiensis had primitive canine-premolar and advanced molar morphologies, a combination of dental traits unknown in any other hominin species. The primitive aspects are comparable to H. erectus from the Early Pleistocene, whereas some of the molar morphologies are more progressive even compared to those of modern humans. This evidence contradicts the earlier claim of an entirely modern human-like dental morphology of H. floresiensis, while at the same time does not support the hypothesis that H. floresiensis originated from a much older H. habilis or Australopithecus-like small-brained hominin species currently unknown in the Asian fossil record. These results are however consistent with the alternative hypothesis that H. floresiensis derived from an earlier Asian Homo erectus population and experienced substantial body and brain size dwarfism in an isolated insular setting. The dentition of H. floresiensis is not a simple, scaled-down version of earlier hominins.     

Pelage Color Variation of Macaca arctoides and Its Evolutionary Implications

Stump-tailed macaques (Macaca arctoides) exhibit significant intraspecific variation in pelage color. Based on their pelage color and geographical distribution, they are classified into 2 subspecies: northern bright brown Macaca arctoides arctoides and southern black Macaca arctoides melanota. However, studies on the natural population are extremely scarce, and researchers have occasionally questioned the subspecific classification. We quantitatively examined pelage color variation of Macaca arctoides in 3 free-ranging populations in Thailand. Pelage color difference between populations is significant. The population distributed south of the Isthmus of Kra showed wide intrapopulational variation, including bright brown, dark brown, and completely black, whereas the northern populations primarily had dark brown hairs. Thus, we conclude that one cannot classify the color variants into subspecies. Further, we hypothesize that the distinctive polymorphism in southern Thailand resulted from geographical isolation caused by the Pleistocene eustatic fluctuations and subsequent recovery of land connection and subsequent gene flow.     

Sequence of the Pearl Oyster Carbonic Anhydrase-Related Protein and Its Evolutionary Implications

Carbonic anhydrases are conserved in vertebrates and invertebrates, and a noncatalytic carbonic anhydrase-related protein VIII (CARP VIII) has been found in deuterostomes and the phylum Placozoa. I isolated a cDNA encoding a noncatalytic CARP from the mantle of the pearl oyster Pinctada fucata. The polypeptide (CARP-1) predicted from the nucleotide sequence shares 44-60% identity with known CARP VIII sequences, and its phylogenetic analysis showed that P. fucata formed a single group with deuterostome invertebrates. However, since CARP VIII sequences are not identified in protostomes, these results suggest that CARP-1 may have originated in molluscs independently from deuterostome CARP VIII sequences.     

The Fresh-water Invertebrate Fauna: Problems and Solutions for Evolutionary Success

The volume of salt waters of the world is more than 10,000 timesthe highly fragmented volume of inhabitable fresh waters, yetthe latter has come to support a rich and euryokous fauna. Inmaking the salt-brackish-fresh transition, the fresh-water (carbonate)fauna has developed clusters of new adaptations. The vast majorityof marine species are restricted to a narrow and monotonouschemical environment, but most freshwater species thrive inhabitats exhibiting a wide (e.g., 10-fold) range of dissolvedsalts, featuring high carbonates, low sodium chloride, and lowpotassium. In comparison with their ancestral marine forms, the temperatefresh-water fauna is generally characterized by: (1) much moreefficient osmoregulatory systems, (2) smaller body size, (3)lower reproductive potential, (4) loss of specializedlarvalstages, (5) a wide variety of anabiotic devices and strategies,(6) well developed low temperature tolerances, (7) aestivationstages in adults, (8) a remarkable facility for overland geographicalmigration and ecesis by disseminules, (9) facility and adaptationsfor withstanding prolonged habitat silting, (10) adaptationsto swift unidirectional currents by many lotic species, and(11) a more general ability to live anaerobically. Certain characters of the marine biota have usually been lostduring transition and ecesis in the fresh-water environment,such as bioluminescence, bright body coloration, and distinctivebright color patterns. Morphological embellishments in the marinebiota are common, including cirri, palps, setation, protuberances,and respiratory devices, but such structures are uncommon amongfresh-water species. It is suggested that respiratory stratagemshave been developed to an excessive and "unnecessary" degreeamong many marine forms, as well as in a few fresh-water insectsand most Eubranchiopoda.     

The Experimental Study of Bacterial Evolution and Its Implications for the Modern Synthesis of Evolutionary Biology

Since the 1940s, microbiologists, biochemists and population geneticists have experimented with the genetic mechanisms of microorganisms in order to investigate evolutionary processes. These evolutionary studies of bacteria and other microorganisms gained some recognition from the standard-bearers of the modern synthesis of evolutionary biology, especially Theodosius Dobzhansky and Ledyard Stebbins. A further period of post-synthesis bacterial evolutionary research occurred between the 1950s and 1980s. These experimental analyses focused on the evolution of population and genetic structure, the adaptive gain of new functions, and the evolutionary consequences of competition dynamics. This large body of research aimed to make evolutionary theory testable and predictive, by giving it mechanistic underpinnings. Although evolutionary microbiologists promoted bacterial experiments as methodologically advantageous and a source of general insight into evolution, they also acknowledged the biological differences of bacteria. My historical overview concludes with reflections on what bacterial evolutionary research achieved in this period, and its implications for the still-developing modern synthesis.     

Novel Phycoerythrins in Marine Synechococcus spp. : Characterization and Evolutionary and Ecological Implications

Four clones of the marine, unicellular, cyanobacteria Synechococcus spp., were examined for the spectral and biochemical features of their phycoerythrins (PE) and their photosynthetic characteristics. Two spectral types of PE which are distinct from known PEs were found. One PE type possessed absorption maxima at 500 and 545 nm and a fluorescence emission at 560 nm. Upon denaturation in acid-urea, two chromophore absorption maxima were obtained, one corresponding to phycourobilin (A_max 500 nm) and one at 558 nm, ascribed to a phycoerythrobilin-like chromophore. The ratio of phycoerythrobilin-like to phycourobilin chromophores was 4.9:1.3. This PE possessed two subunits of M_rs of 17.0 and 19.5 kD for the α and β subunits, respectively. The other PE possessed a single symmetrical absorption at 551 nm and a fluorescence emission at 570 nm. This phycobiliprotein showed a single chromophore absorption band (A_max 558 nm) and yielded two polypeptides, an α of 17.5 kD and a β subunit of 20.8 kD. Both PEs showed a (α, β)_n structure. The presence of phycoerythrobilin-like chromophores (A_max 558 nm) appears to be diagnostic of this marine cyanobacterial group. The features of these PEs combined with additional biochemical data, suggest a possible evolutionary link between the PE-containing marine Synechococcus group and the red algal chloroplast. When the Synechococcus clones were grown under low light intensity the PE-containing clones showed higher photosynthetic performance, larger photosynthetic units sizes, reaction center I to II ratios near unity, and steeper initial slopes of photosynthesis versus irradiance curves than a non-PE-containing clone. These findings demonstrate the high photosynthetic efficiency of PE-containing clones in low light environments common to middepth neritic and oceanic habitats.     

The Evolutionary Origin of Biological Function and Complexity

The identification of dynamic kinetic stability (DKS) as a stability kind that governs the evolutionary process for both chemical and biological replicators, opens up new avenues for uncovering the chemical basis of biological phenomena. In this paper, we utilize the DKS concept to explore the chemical roots of two of biology’s central concepts—function and complexity. It is found that the selection rule in the world of persistent replicating systems—from DKS less stable to DKS more stable—is the operational law whose very existence leads to the creation of function from of a world initially devoid of function. The origin of biological complexity is found to be directly related to the origin of function through an underlying connection between the two phenomena. Thus the emergence of both function and complexity during abiogenesis, and their growing expression during biological evolution, are found to be governed by the same single driving force, the drive toward greater DKS. It is reaffirmed that the essence of biological phenomena can be best revealed by uncovering biology’s chemical roots, by elucidating the physicochemical principles that governed the process by which life on earth emerged from inanimate matter.     

秋枫属的染色体数目及其进化意义

对秋枫属两个种Bischofia javanica和B·polycarpa的体细胞进行了染色体计数研究。结果表明这两个种在形态学上虽然存在差异,如秋枫是圆椎花序,重阳木是总状花序,但染色体数目均为2n=196。同时,结合细胞学、形态学和生态学特点探讨了秋枫属的染色体基数,多倍化的起源及其演化意义。     

植物nrDNA ITS致同进化不完全现象及其进化意义

nrDNA是个多基因家族,在基因内往往有成千上万的拷贝,但通常只包含有一种序列,即所谓致同进化.因此,nrDNA ITS被广泛应用于植物系统与进化研究当中.近年来,部分研究发现,一些植物类群的基因组内nrDNA ITS也存在着较高的多样性,即致同进化不完全现象.该文就裸子植物和被子植物中nrDNA ITS存在致同进化不完全现象的原因和特点,nrDNA ITS假基因的识别,以及其进化意义等进行了综述.     

Evolutionary Origin of the Turtle Shell

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Evolutionary Origin of the Vertebrate Nephron

SYNOPSIS. The primitive form of the vertebrate nephron consistsof a vascular nitration surface overlain with podocytes, a specializedcoelomic cavity to receive the ultrafiltrate, and a tubule formodification to final urine. Although previously thought tobe unique to the vertebrates, this design is now known to bewidespread among invertebrates, including most of the protochordates,and especially their larvae. Goodrich' rejection of the homologyof invertebrate nephridia and the vertebrate nephron, basedon a lack of germ-layer correspondence, is shown to be eitherunsupported by facts or logically dubious. Comparative morphologyof adult and larval invertebrates suggests that filtration excretoryorgans, as protonephridia and metanephridial systems, evolvedin the lineage to the bilaterally symmetrical animals and eachconsisted minimally of a filtration cell, a urinary compartment,and tubule joined to the exterior. Invertebrate metanephridialsystems and protonephridia are discussed as homologous structurescomposed of homologous cells (podocytes, terminal cells; alsonephrocytes). The ontogenetic and phylogenetic distributionof nephridia is correlated with body design, especially bodysize.