Manipulation of Rhizosphere Bacterial Communities to Induce Suppressive Soils

Naturally occurring disease-suppressive soils have been documented in a variety of cropping systems, and in many instances the biological attributes contributing to suppressiveness have been identified. While these studies have often yielded an understanding of operative mechanisms leading to the suppressive state, significant difficulty has been realized in the transfer of this knowledge into achieving effective field-level disease control. Early efforts focused on the inundative application of individual or mixtures of microbial strains recovered from these systems and known to function in specific soil suppressiveness. However, the introduction of biological agents into non-native soil ecosystems typically yielded inconsistent levels of disease control. Of late, greater emphasis has been placed on manipulation of the cropping system to manage resident beneficial rhizosphere microorganisms as a means to suppress soilborne plant pathogens. One such strategy is the cropping of specific plant species or genotypes or the application of soil amendments with the goal of selectively enhancing disease-suppressive rhizobacteria communities. This approach has been utilized in a system attempting to employ biological elements resident to orchard ecosystems as a means to control the biologically complex phenomenon termed apple replant disease. Cropping of wheat in apple orchard soils prior to re-planting the site to apple provided control of the fungal pathogen Rhizoctonia solani AG-5. Disease control was elicited in a wheat cultivar-specific manner and functioned through transformation of the fluorescent pseudomonad population colonizing the rhizosphere of apple. Wheat cultivars that induced disease suppression enhanced populations of specific fluorescent pseudomonad genotypes with antagonistic activity toward R. solani AG-5, but cultivars that did not elicit a disease-suppressive soil did not modify the antagonistic capacity of this bacterial community. Alternatively, brassicaceae seed meal amendments were utilized to develop soil suppressiveness toward R. solani. Suppression of Rhizoctonia root rot in response to seed meal amendment required the activity of the resident soil microbiota and was associated with elevated populations of Streptomyces spp. recovered from the apple rhizosphere. Application of individual Streptomyces spp. to soil systems provided control of R. solani to a level and in a manner equivalent to that obtained with the seed meal amendment. These and other examples suggest that management of resident plant-beneficial rhizobacteria may be a viable method for control of specific soilborne plant pathogens.     

A comparison of methods for measuring the colonisation of a root system by fluorescent Pseudomonads

Methods are described for measuring the colonisation of a radish (Raphanus sativus) root system by seedlings with rifampicin resistant fluorescent pseudomonads by dilution plating, and which would take account of differences in root morphology. Differences in the levels of pseudomonad colonisation was highly dependent on the units in which surface areas was expressed. Population levels are expressed using estimates of surface area based on root length, tap-root length and root weight. The best estimate of surface area was root length, but the most practical method was surface area calculated as a function of dry weight. This method could differentiate differences in the levels of root colonisation independent of differences in root morphology and was efficient enough to allow the routine processing of a large number of replicate root samples.     

Factors affecting the colonisation of a root system by fluorescent Pseudomonads: The effects of water,temperature and soil microflora

The colonisation of a radish root system by strains ofPseudomonas fluorescens, selected for their ability to promote potato and radish growth under different environmental conditions is reported. In pot experiments colonisation of different parts of the root system was measured at different temperatures, in different watering regimes and in sterile and recropped soil. Root colonisation was extensive but populations were highest on the upper root system and their distribution throughout the root system was greatly affected by environmental factors. percolation of water through the soil and partial soil sterilisation enhanced colonisation but the effects of temperature and recropping were complex. Growth promotion was unpredictable and there was no simple relationship between PGPR colonisation and stimulation of plant growth.     

Trichoderma harzianum enhances the production of nematicidal compounds in vitro and improves biocontrol of Meloidogyne javanica by Pseudomonas fluorescens in tomato

AIMS: To determine the influence of soil-borne fungus Trichoderma harzianum on the biocontrol performance of Pseudomonas fluorescens strain CHA0 and its 2,4-diacetylphloroglucinol (DAPG) overproducing derivative CHA0/pME3424 against Meloidogyne javanica. METHODS AND RESULTS: Amendment of the culture filtrate (CF) or methanol extract of the CF of a T. harzianum strain Th6 to P. fluorescens growth medium enhanced the production of nematicidal compound(s) by bacterial inoculants in vitro. In addition, bacteria overwhelmingly expressed phl'-'lacZ reporter gene when the medium was amended with CF of T. harzianum. Pseudomonas fluorescens and T. harzianum applied together in unsterilized sandy loam soil caused greater reduction in nematode population densities in tomato roots. CONCLUSIONS: Trichoderma harzianum improves root-knot nematode biocontrol by the antagonistic rhizobacterium P. fluorescens both in vitro and under glasshouse conditions. SIGNIFICANCE AND IMPACT OF THE STUDY: The synergistic effect of T. harzianum on the production of nematicidal compound(s) critical in biocontrol may improve the efficacy of biocontrol bacteria against plant-parasitic nematodes. Considering the inconsistent performance of the biocontrol agents under field conditions, application of a mixture of compatible T. harzianum and P. fluorescens would more closely mimic the natural situation and might broaden the spectrum of biocontrol activity with enhanced efficacy and reliability of control.     

Selection of antagonistic bacteria isolated from the Physalis peruviana rhizosphere against Fusarium oxysporum

Aims: Cape gooseberries (Physalis peruviana) have become increasingly important in Colombia for both domestic consumption and the international export market. Vascular wilting caused by Fusarium oxysporum is the most damaging disease to P. peruviana crops in Colombia. The control of this pathogen is mainly carried out by chemical and cultural practices, increasing production costs and generating resistance. Therefore, the objectives of this study were to test rhizobacteria isolates from P. peruviana rhizosphere against F. oxysporum under in vitro and in vivo conditions. Methods and Results: Over 120 strains were isolated, and five were selected for their high inhibition of F. oxysporum growth and conidia production under in vitro conditions. These strains inhibited growth by 41–58% and reduced three‐ to fivefold conidia production. In the in vivo assays, all the tested isolates significantly reduced fungal pathogenicity in terms of virulence. Isolate B‐3·4 was the most efficient in delaying the onset of the first symptoms. All isolates were identified as belonging to the genus Pseudomonas except for A‐19 (Bacillus sp.). Conclusions: Our results confirmed that there are prospective rhizobacteria strains that can be used as biological control agents; some of them being able to inhibit in vitro F. oxysporum growth and sporulation. Significance and Impact of the Study: Incorporating these bacteria into biological control strategies for the disease that causes high economical losses in the second most exported fruit from Colombia would result in a reduced impact on environment and economy.     

Proteases from Bacillus: a new insight into the mechanism of action for rhizobacterial suppression of nematode populations

AIMS: The aim of this study was to investigate the role of proteases in Bacillus spp. of rhizobacteria in suppressing nematode populations and to understand their mechanism of action. METHODS AND RESULTS: Rhizobacteria with nematicidal activity were isolated from soil samples of five root knot nematode-infested farms. Among these strains, nematotoxicities of Bacillus strains were intensively analysed. Further assays of nematicidal toxins from Bacillus sp. strain RH219 indicated an extracellular cuticle-degrading protease Apr219 was an important pathogenic factor. The Apr219 shared high similarity with previously reported cuticle-degrading proteases from Brevibacillus laterosporus strain G4 and Bacillus sp. B16 (Bacillus nematocida). The cuticle-degrading protease genes were also amplified from four other nematicidal Bacillus strains isolated from the rhizosphere. In addition to Apr219, a neutral protease Npr219 from Bacillus sp. RH219 was also investigated for activity against nematodes. CONCLUSIONS: The wide distribution of cuticle-degrading proteases in Bacillus strains with nematicidal activity suggested that these enzymes likely play an important role in bacteria-nematode-plant-environment interactions and that they may serve as important nematicidal factors in balancing nematode populations in the soil. SIGNIFICANCE AND IMPACT OF THE STUDY: Increased understanding of the mechanism of action of Bacillus spp. against nematodes could potentially enhance the value of these species as effective nematicidal agents and develop new biological control strategies.     

Mechanisms of natural soil suppressiveness to soilborne diseases

Suppressive soils are characterized by a very low level of disease development even though a virulent pathogen and susceptible host are present. Biotic and abiotic elements of the soil environment contribute to suppressiveness, however most defined systems have identified biological elements as primary factors in disease suppression. Many soils possess similarities with regard to microorganisms involved in disease suppression, while other attributes are unique to specific pathogen-suppressive soil systems. The organisms operative in pathogen suppression do so via diverse mechanisms including competition for nutrients, antibiosis and induction of host resistance. Non-pathogenic Fusarium spp. and fluorescent Pseudomonas spp. play a critical role in naturally occurring soils that are suppressive to Fusarium wilt. Suppression of take-all of wheat, caused by Gaeumannomyces graminis var. tritici, is induced in soil after continuous wheat monoculture and is attributed, in part, to selection of fluorescent pseudomonads with capacity to produce the antibiotic 2,4-diacetylphloroglucinol. Cultivation of orchard soils with specific wheat varieties induces suppressiveness to Rhizoctonia root rot of apple caused by Rhizoctonia solani AG 5. Wheat cultivars that stimulate disease suppression enhance populations of specific fluorescent pseudomonad genotypes with antagonistic activity toward this pathogen. Methods that transform resident microbial communities in a manner which induces natural soil suppressiveness have potential as components of environmentally sustainable systems for management of soilborne plant pathogens. This revised version was published online in August 2006 with corrections to the Cover Date.     

Effects of transplant type, plant growth-promoting rhizobacteria, and soil treatment on growth and yield of strawberry in Florida

The effects of transplant type and soil treatment on growth and yield of strawberries (Fragaria x ananassa Duch.) produced in annual hill culture were evaluated for three years in Florida field trials. `Sweet Charlie' and `Camarosa' strawberry transplants were propagated as bare root, plug, and plugs amended with a plant growth-promoting rhizobacterial (PGPR) treatment, LS213. The transplant treatments were evaluated in combination with methyl bromide, 1, 3-dichloropropene (Telone II), an unregistered iodine-based compound (Plantpro 45), and untreated soil. `Camarosa' plugs amended with LS213 had higher overall yields than bare root transplants in all three years. Both `Camarosa' and `Sweet Charlie' plug and LS213 plug plants produced yields approximately two weeks earlier than bare root transplants in all years. Regardless of transplant type, and in both consecutive years of Plantpro 45 and Telone application, treatment with Plantpro 45 resulted in smaller and less healthy root systems than other soil treatments, and treatment with Telone resulted in yields comparable to methyl bromide.     

Effects of wheat volunteers and blackgrass in set-aside following a winter wheat crop on soil infectivity and soil conduciveness to take-all

Two experiments were carried out in France in which disease indices were used to evaluate the effects of wheat volunteers and blackgrass (Alopecurus myosuroides) on soil infectivity and soil conduciveness to take-all caused by Gaeumannomyces graminis var. tritici. Soil infectivity was evaluated by measuring the disease index on susceptible wheat plants grown on soil samples collected from the field. Soil conduciveness to the disease was obtained by measuring disease indices on plants grown on soil samples to which different amounts of take-all fungus inoculum were added. One experiment (Expt. 1) was carried out using soils from farmers' fields (two fields in 1994 and two in 1995); soil infectivity and soil conduciveness were evaluated for three experimental situations: bare soil, soil with wheat volunteers and soil with blackgrass plants. In 1994 the soil infectivity was zero in bare soil, high with the wheat cover, and intermediate with the blackgrass cover. In 1995 the soil infectivity was uniformly low for all three conditions. Soils bearing wheat were less conducive than bare soil, soils bearing blackgrass and bare soils were similarly conducive. A second experiment (Expt. 2) carried out in 1995 compared the soil infectivity and soil conduciveness to take-all of soils planted with wheat or blackgrass in set-aside land after periods of wheat monoculture of 0–6 yr. The soil infectivity was low for all treatments. The soil was more conducive after blackgrass than after wheat. In both cases, the soil conduciveness was less when the monoculture had continued for more than 4 yr. The decline was less after blackgrass than after wheat. Thus, whenever set-aside is set up during the increase phase of the disease in fields with cereal successions, abundant wheat volunteers might hinder the expected positive effect of a break in cereal successions on take-all development. The presence of blackgrass in a set-aside field, with significant soil infectivity and high soil conduciveness, might increase the risks of take-all development in a wheat crop following set-aside.     

Biocontrol Efficacy Among Strains of Pochonia chlamydosporia Obtained from a Root-Knot Nematode Suppressive Soil

Three Pochonia chlamydosporia var. chlamydosporia strains were isolated from a Meloidogyne incognita-suppressive soil, and then genetically characterized with multiple Pochonia-selective typing methods based on analysis of ß-tubulin, rRNA internal transcribed spacer (ITS), rRNA small subunit (SSU), and enterobacterial repetitive intergenic consensus (ERIC) PCR. All strains exhibited different patterns with the ERIC analysis. Strains 1 and 4 were similar with PCR analysis of ß-tubulin and ITS. The strains'' potential as biological control agents against root-knot nematodes were examined in greenhouse trials. All three P. chlamydosporia strains significantly reduced the numbers of nematode egg masses. When chlamydospores were used as inoculum, strain 4 reduced egg numbers on tomato roots by almost 50%, and showed effects on the numbers of J2 and on nematode-caused root-galling. A newly developed SSU-based PCR analysis differentiated strain 4 from the others, and could therefore potentially be used as a screening tool for identifying other effective biocontrol strains of P. chlamydosporia var. chlamydosporia.