Molecular phylogeny of the western Atlantic species of the genus Portunus (Crustacea, Brachyura, Portunidae)

The genus Portunus encompasses a comparatively large number of species distributed worldwide in temperate to tropical waters. Although much has been reported about the biology of selected species, taxonomic identification of several species is problematic on the basis of strictly adult morphology. Relationships among species of the genus are also poorly understood, and systematic review of the group is long overdue. Prior to the present study, there had been no comprehensive attempt to resolve taxonomic questions or determine evolutionary relationships within this genus on the basis of molecular genetics. Phylogenetic relationships among 14 putative species of Portunus from the Gulf of Mexico and other waters of the western Atlantic were examined using 16S sequences of the rRNA gene. The resultant molecularly based phylogeny disagrees in several respects with current morphologically based classification of Portunus from this geographical region. Of the 14 species generally recognized, only 12 appear to be valid. We recommend that P. vossi be hereafter regarded as a junior synonym of P. spinimanus and that P. bahamensis be regarded as a junior synonym of P. depressifrons . Our analysis suggests that western Atlantic members of the genus can be subdivided into at least three well-defined clades. Pending further molecular analyses with a large subset of species, it appears that the genus is not monophyletic and that it warrants further taxonomic revision.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 150 , 211–220.     

Systematics of two deep-water species from the Indo-West Pacific: Struvea gardineri A.Gepp & E.Gepp and Phyllodictyon orientale (A.Gepp & E.Gepp) Kraft & M.J.Wynne (Siphonocladales, Chlorophyta)

Two rare and ill-known subtidal species of stalked, net-forming green algae, Struvea gardineri A.Gepp & E.Gepp and Phyllodictyon orientale (A.Gepp & E.Gepp) Kraft & M.J.Wynne, are re-described on the basis of the examination of type material and recent collections from the Maldives, Seychelles, and Socotra Island in the tropical Indian Ocean. The taxonomic position of both species is re-appraised on the basis of morphological data (cell division, branching pattern, tenacular cells, crystalline cell inclusions, cell shape, and cell dimensions) and molecular phylogenetic evidence (partial large subunit nuclear ribosomal DNA sequences). On the basis of the occurrence of segregative cell division in young plants of S. gardineri , this species is returned to its original genus, Struvea . Cell division in P. orientale takes place exclusively by centripetal wall ingrowths, confirming its placement in the genus Phyllodictyon as currently defined. However, morphological observations and molecular phylogenetic studies indicate that the delineation of genera on the basis of modes of cell division is problematic, and that the genera Struvea and Phyllodictyon , as presently conceived, almost certainly do not represent natural groups.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 115–132.     

An extraordinary new rheophyte in the genus Leptactina (Rubiaceae, Pavetteae) from Rio Muni (Equatorial Guinea)

A distinctive new species of Rubiaceae from Rio Muni, Equatorial Guinea, is described and illustrated. Leptactina rheophytica is the only rheophyte known in the genus. Its diagnostic characters are elucidated, its taxonomic affinities are discussed, and notes on its conservation status are provided.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 109–113.     

A taxonomic revision of the genus Flagenium Baill. (Rubiaceae–Octotropideae)

A taxonomic revision of the genus Flagenium Baill. is presented. Flagenium is endemic to Madagascar and comprises six species; three new species are described here ( F. farafanganensis , F. petrikensis , and F. pedunculatum ) and one species ( F. arboreum ) is transferred into synonymy. Each species is fully described, and summaries of distribution, habitat and ecology, and phenology are given; conservation assessments are provided for each species. Flagenium is characterized by having ovaries with at least two erect and two pendulous ovules per locule, which, depending on the species, can display an additional two to four horizontal ovules per locule arranged between the uppermost and lowermost ovules. In addition, Flagenium has a longitudinally ten-ribbed fruit. These features are potentially unique within the Octotropideae.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 155 , 557–570.     

Systematic implications of wood and bark anatomy in the Pacific Island genus Meryta (Araliaceae)

Wood anatomy was examined in 16 species of Meryta (a genus of c . 35 species) and bark anatomy was studied in 12 species. All but two of these taxa form an assemblage corresponding to the Northern Arc clade, one of two major groups identified by a recent molecular phylogenetic study. M. sinclairii and M. tenuifolia (corresponding to the New Zealand/Fiji clade) differ distinctly by having more numerous simple perforation plates, multiseriate rays with few marginal rows, and the absence of sclerified cells in collapsed secondary phloem, a bark feature that has not yet been found elsewhere in Araliaceae. The increase in abundance of simple perforation plates in the wood of these two species is not accompanied by a decrease in the number of bars on scalariform perforation plates. The wood structure of Meryta bears a strong resemblance to members of the Pacific Schefflera clade, sharing similar ranges of variation of several features. Bark characters, such as the diameter of the cortical secretory canals, the types of crystal in cortical cells, the types of axial parenchyma cell in collapsed secondary phloem, and the presence of sheath cells by phloem rays, appear to be of diagnostic value for some species of Meryta .  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 363–379.     

Okeanomyces, a new genus to accommodate Halosphaeria cucullata (Halosphaeriales, Ascomycota)

The taxonomic affinity of Halosphaeria cucullata to Halosphaeria is reassessed based on a recent collection of this fungus. Halosphaeria cucullata is characterized by immersed, darkly coloured ascomata, clavate asci which deliquesce very early in development, and cylindrical ascospores with or without a polar cap-like appendage at one end. In a phylogenetic analysis of the LSU rDNA sequences from members of the Halosphaeriaceae, H. cucullata did not form a monophyletic clade with H. appendiculata , the type species of the genus. These results suggest that H. cucullata should not be included in Halosphaeria . Okeanomyces gen. nov. is proposed to accommodate this fungus.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 223–229.     

Perissothallus, a new genus for Late Pennsylvanian–Early Permian noncalcareous algae conventionally assigned to Schizopteris (aphleboid foliage)

The morphogenus Schizopteris was established in the early 19th century for late Palaeozoic aphleboid foliage of uncertain affinities, and numerous specimens have subsequently been assigned to this taxon. Some of these fossils do not represent foliage, but rather noncalcareous algae. Although this inconsistency has been noted, an attempt to exclude the algae from Schizopteris has not yet been undertaken. Here we propose the new genus Perissothallus to accommodate those fossils conventionally assigned to Schizopteris that represent algae. The name P. versiformis is introduced for the type species from the Upper Pennsylvanian of Kansas (USA). Specimens from the Lower Permian of Germany are interpreted as a second species of Perissothallus , and the name P. densus is proposed. Perissothallus consists of erect cylindrical branches that radiate from a small holdfast and dichotomize repeatedly. Vegetative reproduction occurs in the form of daughter thalli produced on prostrate branches. Similarities in basic structure exist between Perissothallus and members of the extant algal genera Codium (Chlorophyta), Dictyota (Phaeophyta), and Scinaia (Rhodophyta).  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 477–488.     

Molecular phylogeny of shrimps from the genus Lysmata (Caridea: Hippolytidae): the evolutionary origins of protandric simultaneous hermaphroditism and social monogamy

Shrimps from the genus Lysmata are known because of their wide diversity of lifestyles, mating systems, symbiotic partnerships, and conspicuous coloration. They can occur in crowds (large aggregations), in small groups, or as socially monogamous pairs. Shrimps from this genus are rare, if not unique among crustaceans, because of their unusual sexual system. To date, the sexual system of all species investigated comprises a protandric simultaneous hermaphroditism: shrimps initially mature and reproduce as males and later in life turn into functional simultaneous hermaphrodites. The evolutionary relationships of the species within the genus are unsettled. A molecular phylogeny of the group may shed light on the evolutionary origins of the peculiar sexual and social systems of these shrimps and help resolve standing taxonomic questions long overdue. Using a 647-bp alignment of the 16S rRNA mitochondrial DNA, we examined the phylogenetic relationship of 21 species of shrimps from the genus Lysmata from several biogeographical regions; the Atlantic, Pacific, and Indo-Pacific. The resulting phylogeny indicates that the genus is paraphyletic and includes the genus Exhippolysmata . The constituent species are subdivided into three well supported clades: one group exclusively composed of neotropical species; a second clade comprising the Indo-Pacific and Atlantic symbiotic fish cleaner shrimps; and a third clade including tropical and temperate species from the Atlantic and Pacific. The molecular phylogeny presented here does not support a historical contingency hypothesis, previously proposed to explain the origins of protandric simultaneous hermaphroditism within the genus. Furthermore, the present study shows that monogamous pair-living is restricted to one monophyletic group of shrimps and therefore probably evolved only once.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 415–424.     

Phyllanthus section Choretropsis (Euphorbiaceae) in Brazil

Section Choretropsis genus Phyllanthus (Euphorbiaceae) is formed by plants whose branches are modified into phylloclades. Despite the suitable characteristics of phylloclades within the Phyllanthus genus, the systematics of these species are poorly understood. Morphological data are presented here to allow future revision of this taxonomic group. The section is represented by nine species distributed in South America, eight of them endemic to Brazil. Our taxonomic studies distinguish the species and propose the synonymization of nine varieties of P. klotzschianus and two varieties of P. flagelliformis based on vegetative and reproductive characters. The diversity of branching and the morphology of phylloclades are discussed.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 150 , 131–164.     

Weintrauboa, a new genus of pimoid spiders from Japan and adjacent islands, with comments on the monophyly and diagnosis of the family Pimoidae and the genus Pimoa (Araneoidea, Araneae)

The spider genus Weintrauboa new genus (Araneae, Pimoidae) is described to place two species of pimoids from Japan and adjacent islands that were formerly classified in the linyphiid genus Labulla . Weintrauboa contortipes (Karsch) new comb., the type species, and W. chikunii (Oi) new comb. are redescribed. Parsimony analysis of morphological characters provides robust support for the monophyly of the genus Weintrauboa and corroborates the monophyly of Pimoa , Pimoidae, and the clade Linyphiidae plus Pimoidae. New diagnoses for Pimoa and Pimoidae are provided.  © 2003 The Linnean Society of London, Zoological Journal of the Linnean Society , 2003, 139 , 261–281     

Chromosomal variability in the genus Primula (Primulaceae)

Chromosome numbers and measurements were recorded in 47 individuals of ten taxa of Primula , representing eight species and two subspecies from ten populations. The basic numbers of chromosomes were x  = 8, 9 or 11, and they were mostly metacentric, medium-long to medium-small, ranging in length from c . 3.6 µm to 1.6 µm. Diploid chromosome numbers of 2 n  = 2 x  = 24 and 22 were scored for the first time in P. loeseneri Kitag. and P. prenantha Balf. & Sm., respectively. A new ploidy level of 2 n  = 4 x  = 44 was found in P. burmanica Balf. & King. The recorded diploid numbers of the remaining species confirmed earlier reports. Interspecific variability in chromosome numbers was correlated with heterogeneity in their mean length. Comparison of the data with those in the literature revealed that the observed variability of chromosomal characters was compatible with the other taxonomic criteria and supports the current taxonomic delimitation. Chromosomal variation at the diploid level is the predominant feature in Primula evolution, and allopatric speciation has played a major role in its specific diversity. Subgen. Aleuritia could represent the main clade from which the other subgenera have evolved. The origin of the chromosome numbers, geographical distribution and evolution of the species were assessed, and the parallel polyphyletic mode of evolution in the genus was confirmed.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 150 , 211–219.     

The genus Pholcus (Araneae, Pholcidae) in the Canary Islands

This paper offers a detailed taxonomic revision of all Canarian Pholcus species described before 2003, all of which are newly described and newly illustrated. Pholcus guadarfia sp. nov. is described, while a neotype for Pholcus malpaisensis Wunderlich, 1992 is also provided. In addition, we propose Pholcus gomerae Wunderlich, 1980 as a senior synonym for Pholcus gomeroides Wunderlich, 1987. More importantly, cladistic analysis based on the morphological characters of the Macaronesian Pholcus species was conducted for the first time. Parsimony analyses of 73 morphological characters revealed the close relationships between those species from the Canary Islands, Madeira and the Macaronesian enclave in Africa (between Agadir and Nouadhibou).  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 151 , 59–114.     

Revision of the Malagasy species of the genus Tricalysia (Rubiaceae)

The Malagasy representatives of the large African genus Tricalysia (tribe Coffeeae s.l.) are revised. Three Malagasy species were hitherto recognized in the genus, namely T. cryptocalyx , T. madagascariensis , and T. ovalifolia . In this study, two species, T. boiviniana and T. leucocarpa , are transferred from the genus Hypobathrum and seven new species and two new subspecies are described, raising the species number for Tricalysia to a total of 12. This marked increase in species number is a recurring pattern for many Malagasy genera in systematically poorly known families such as Rubiaceae. All the species are described in detail and illustrated, and a list of exsiccatae and a distribution map are provided. Furthermore, the characters of the Malagasy taxa are compared with those of the continental African species, and their infrageneric status is discussed. With the exception of T. ovalifolia , a member of subgenus Empogona , all Malagasy species belong to subgenus Tricalysia . Because of their unisexual flowers, these species cannot be accommodated within one of the four existing sections in subgenus Tricalysia . A new section, Androgyne , is therefore recognized.  © 2007 National Botanic Garden of Belgium. Journal compilation © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 155 , 83–126.     

Systematics and biogeography of the widespread Neotropical gekkonid genus Thecadactylus (Squamata), with the description of a new cryptic species

The systematics of the widespread neotropical gekkonid genus Thecadactylus is investigated using a combination of morphological, morphometric and mtDNA (cytochrome b ) sequence data, forming a total evidence dataset. The analysis tackles the common yet complex problem of a widespread taxon consisting of one or more cryptic species that are difficult to diagnose using morphology alone. The data are analysed using both maximum parsimony and Bayesian inference. Virtually all analyses resolve a well-supported south-western Amazonian clade distinct from the remainder of the recognized T. rapicauda . The south-western Amazonian clade is not only robustly supported, but also exclusive, geographically coherent and sufficiently distinct to warrant specific recognition. The new species is diagnosable on the basis of molecular sequences that are 23.0–26.9% divergent from those of T. rapicauda , and morphological evidence. Bayesian inference analysis robustly resolves meaningful and repeatable patterns of relationship. The biogeography of Thecadactylus is interpreted in the context of its two constituent species, and difficulties of resolving systematic and biogeographical patterns in widespread, cosmopolitan taxa are discussed. © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 149 , 339–370.     

A palynological study of the genus Mentha L. (Lamiaceae)

The pollen morphology and exine structure of 10 Mentha L . species were investigated using light microscopy and scanning electron microscopy. The pollen grains of all 11 species were hexazonocolpate with granular membranes and a circular amb, varying in shape from prolate-spheroidal to suboblate. Different colpus shapes were recognized in M . ×  dumetorum . The exine was bireticulate in section Pulegium , and reticulate in section Menthae . A correlation was found between pollen size and chromosome number. The results indicate that the pollen characters of the genus Mentha are valuable for taxonomic applications and may be useful for classification.  © 2008 Uludag University. Journal compilation © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 157 , 141–154.     

Chromosome counts in Asian Artemisia L. (Asteraceae) species: from diploids to the first report of the highest polyploid in the genus

This work comprises 24 reports of chromosome numbers in 24 Artemisia L. species from Asia. Ten are included in the subgenus Dracunculus Besser and the rest belong to other subgenera. Seven counts are new reports, 14 are consistent with scarce previous ones, and three contribute new ploidy levels. That carried out in A. medioxima reports the highest ploidy level ever counted for the genus (16 x ). There is only one species with x  = 8 as the basic chromosome number. In the remaining x  = 9-based species, ploidy levels range from 2 x to 16 x , illustrating the great role played by polyploidy in the evolution of the genus.  © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 301–310.     

Molecular diversification of salamanders of the tropical American genus Bolitoglossa (Caudata: Plethodontidae) and its evolutionary and biogeographical implications

The largest genus of salamanders, Bolitoglossa (Plethodontidae), is widespread in tropical America, where it occurs in diverse habitats and elevations, from high elevation grasslands to lowland rain forest . It has the most extensive geographical range of any salamander genus. While most species occur in Middle America, it ranges throughout most of tropical South America as well. Phylogenetic analysis of 1196 bp of two mitochondrial genes (cytochrome b , 16S RNA) from 55 species offers strong support for the monophyly of the genus and sorts the species into a number of clades. Taking into account morphology, distribution, general ecology, and prior systematic and taxonomic studies, we recognize seven subgenera, four of them new: Bolitoglossa Duméril, Bibron et Duméril, 1854, Eladinea Miranda Ribeiro, 1937, Magnadigita Taylor, 1944, Mayamandra , Nanotriton , Oaxakia and Pachymandra . All South American and some lower Middle American species are included in a single well -supported clade, Eladinea . At the species level our analyses uncover the existence of large genetic diversity within morphologically homogeneous taxa. We propose the new combination: B. (Eladinea) paraensis (Unterstein, 1930) stat. nov. , for Brazilian salamanders previously included under B. altamazonica . We evaluate evidence for the multiple colonization of the tropical lowlands by morphologically derived species groups. South America was invaded by members of one clade, Eladinea , which we infer to have dispersed to South America prior to closure of the Panamanian Portal. Despite the relatively long history of salamanders in South America, that continent now accounts for a relatively small proportion of the lineages and species of neotropical salamanders.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81 , 325–346.