The Oxidising Activity of Roots in Waterlogged Soils

Root oxidising activity has been studied quantitatively in two species, Menyanthes trifoliata and Molinia coerulea, using a non-specific dye technique, and an oxygen-specific “polarographic” technique in conjunction with artificial roots constructed from silicone rubber tubing. Oxidising activity in these two species has been found to be up to nine times greater than can be accounted for by oxygen diffusing from the roots. Enzymatic oxidation is thought to be the cause of such high oxidising activity. The characteristic patterns of iron oxidation found on and around roots are discussed, and oxidation of iron at the rhizophere ‘boundary’ is illustrated. Earlier work on root oxidising activity is briefly reviewed.     

Oxygen Diffusion from the Roots of Rice Grown under Non-waterlogged Conditions

Three rice varieties, cv. Norin 36, cv. Norin 37 and cv. Yubae, were grown in a loam with a 20 cm water-table which gave aerobic conditions to a depth of not less than 15 to 17 cm. Under these conditions Norin 36 grew more vigorously and tillered more frequently than the other two varieties. The rates of oxygen diffusion at 23°C from roots up to 11 cm in length were however appreciably lower for Norin 36 (4.3 × 10^?8g · cm^?2 of root surface · min^?1) than for Norin 37 or Yubae (c. 7.8 × 10^?8g). A considerable increase (up to 200 %) in the oxygen diffusion rate (ODR) from the roots occurred if they were cooled to 3°C, and at this temperature differences in ODR between the varieties were not significant. For a purely physical system, because of the decrease in the diffusion coefficient of oxygen in water, and, the increase in oxygen solubility, a drop of c. 20 % in ODR should accompany the above 20°C drop in temperature. A 16 % drop was recorded for artificial ‘roots’ under these conditions. It was concluded that respiratory activity at the higher temperature must have been responsible for the low readings and intervarietal differences observed at 23°C. By increasing the 3°C values by 25 % a mean value of 14.2 × 10^?8g · cm^?2 of root surface · min^?1 was recorded for the three varieties, being the probable ODR at 23°C in the absence of a respiratory factor. Calculations show that respiratory activity removed enough oxygen to reduce the ODR for Norin 36 by more than 9 × 10^?8g, and for Norin 37 and Yubae by c. 6.7 × 10^?8g · cm^?2 of root surface · min^?1. Anatomical investigations showed that cortical breakdown was always extensive at 4 to 4.5 cm from the apex of the roots. In some cases however breakdown had not occurred in the basal segment of the root. No opinion could be formed as to whether differences in the amount of cortical breakdown between the varieties might have occasioned the respiratory differences observed. An interesting feature of the root anatomy was the failure of breakdown in those regions of the roots through which lateral roots emerged.     

Rhizosphere Oxidation in Rice and other Species: A Mathematical Model Based on the Oxygen Flux Component

A mathematical model is presented from which one can predict the likely dimensions of oxidised rhizospheres due to oxygen diffusing from roots into anaerobic media such as wet soil. The analysis applies Fick's law of diffusion to the diffusion of oxygen from a cylindrical object (the root) into a sink (the soil) which is absorbing oxygen at a constant rate M. Solution of the final equation gives the dimensions of the oxygenated rhizosphere, i.e. the distance from the root at which the oxygen concentration becomes zero. The results obtained supoprt the view that oxygen diffusing from roots will produce a rhizosphere ‘sheath’ charged with oxygen. Furthermore, some of the predicted limits for this oxygen sheath correspond with those of ferric iron sheaths around roots in waterlogged soils. Calculations also show that oxygenated rhizospheres around the roots of plants very tolerant of reducing conditions. e.g. Menyanthes trifoliata, Oryza sativa and Eriophorum angustifolium, should be from two to three times as broad as for Molinia coerulea which is a species intolerant of strong reducing conditions. Consequently if oxidation reactions are not instantaneous but occur only gradually as quantities of reduced products enter the oxygenated zone, then the plants with the larger rhizospheres will be significantly better protected from absorbing large amounts of reduced products than will those plants with smaller oxygenated zones. This may in part explain the reason for intervarietal defferences in physiological disease resistance in rice. Finally the observation is made that small lateral roots can be expected to oxygenate a zone nearly as large as, or probably larger, than the primary root from which they have arisen.     

The Significance of Oxygen Transport and of Metabolic Adaptation in Flood-Tolerance of Senecio Species

Experiments were designed to provide information about the physiological basis of flood-tolerance in Senecio species. The oxygen concentration in roots of S. jacobaea L., S. viscosus L. and S. vulgaris L. became almost zero after transplantation to a solution of low oxygen concentration, and it was concluded that the flood-sensitivity of these Senecio species could be due to insufficient oxygen transport from the shoots to the roots. The oxygen concentration in the roots of the flood-tolerant S. congestus (R.Br.) DC., growing in a solution of low oxygen tension, was almost sufficient to maintain oxygen utilization at the rate observed in roots of plants, grown in an air-saturated solution. Oxygen utilization by roots of the flood-tolerant S. aquaticus Hill, growing in a solution of low oxygen tension, was inhibited 50%. However, the oxygen concentration in the roots of this species remained high enough to maintain cytochrome oxidase activity and oxidative phosphorylation at the rate observed in roots from an air-saturated environment. The activity of a second (“alternative”) oxidase must have been drastically reduced. Alternative NADH-oxidizing enzymes, like nitrate reductase which was induced by anaerobiosis in roots of S. aquaticus, might replace the regulatory function of the alternative oxidase. — Thus, in S. aquaticus root porosity and root length contributed to the maintenance of an oxygen concentration which was sufficient for uninhibited cytochrome oxidase activity and oxidative phosphorylation rate in roots growing in a solution of low oxygen tension.     

Effects of regional origin and genotype on intraspecific root communication in the desert shrub Ambrosia dumosa (Asteraceae)

Previous work has shown that the contact inhibition that occurs among roots of Ambrosia dumosa shrubs has a self/nonself recognition capability. In the current study, we investigated some of the geographic and genotypic dimensions of this recognition capability by using root observation chambers to observe the effects of encounters of individual roots on root elongation rates. We measured such effects in encounters between roots of plants from the same region and compared these to effects in encounters between roots of plants from two different regions. We also measured effects of encounters between roots of plants from the same clones and compared these to effects of encounters of roots of plants from different clones. Roots of plants from the same region (population) showed the usual “nonself” precipitous decline in elongation rates following contact, but when roots of plants from different regions contacted each other, elongation rates continued unchanged. When roots of separate plants from the same clone contacted each other, the same “nonself” precipitous decline in elongation rates as seen in encounters between roots of plants of different clones from the same region occurred. Meanwhile, in these same experiments “self” contacts between sister roots connected to the same plants resulted in no changes in elongation rates. Thus, differences between individuals from two geographically separate populations of Ambrosia dumosa may be sufficient to thwart the “nonself,” population-level recognition of similarity apparently necessary for contact inhibition. Furthermore, the “self” recognition mechanism, which precludes contact inhibition between two roots on the same plant, appears to be physiological rather than genetic in nature.     

Controlled supply of trace amounts of oxygen in laboratory scale fermentations

A detailed study of anaerobic yeast fermentations requires controlled addition of minor amounts of oxygen to the fermentor. A method for supplying small-scale fermentations with millimolar amounts of oxygen is described. The controlled addition is accomplished by diffusion of oxygen through silicone tubing carrying nitrogen to the fermentor. Sulfite values of the fermentation system are given for different gas velocities and lengths of silicone tubing. Two experiments are outlined in which this technique is applied and the possible energy yield from oxydative phosphorylation is discussed.     

Changes in growth,porosity, and radial oxygen loss from adventitious roots of selected mono‐ and dicotyledonous wetland species with contrasting types of aerenchyma

Growth in stagnant, oxygen‐deficient nutrient solution increased porosity in adventitious roots of two monocotyledonous (Carex acuta and Juncus effusus) and three dicotyledonous species (Caltha palustris, Ranunculus sceleratus and Rumex palustris) wetland species from 10 to 30% under aerated conditions to 20–45%. The spatial patterns of radial oxygen loss (ROL), determined with root‐sleeving oxygen electrodes, indicated a strong constitutive ‘barrier’ to ROL in the basal root zones of the two monocotyledonous species. In contrast, roots of the dicotyledonous species showed no significant ‘barrier’ to ROL when grown in aerated solution, and only a partial ‘barrier’ when grown in stagnant conditions. This partial ‘barrier’ was strongest in C. palustris, so that ROL from basal zones of roots of R. sceleratus and R. palustris was substantial when compared to the monocotyledonous species. ROL from the basal zones would decrease longitudinal diffusion of oxygen to the root apex, and therefore limit the maximum penetration depth of these roots into anaerobic soil. Further studies of a larger number of dicotyledonous wetland species from a range of substrates are required to elucidate the ecophysiological consequences of developing a partial, rather than a strong, ‘barrier’ to ROL.     

Root halotropism: Salinity effects on Bassia indica root

Abstract

Plant roots are responsible for the acquisition of nutrients and water from the soil and have an important role in plant response to soil stress conditions. The direction of root growth is gravitropic in general. Gravitropic responses have been widely studied; however, studies about other root tropisms are scarce. Soil salinity is a major environmental response factor for plants, sensed by the roots and affecting the whole plant. Our observations on root architecture of Kochia (Bassia indica) indicated that salinity may cue tropism of part of the roots toward increasing salt concentrations. We termed this phenomenon “positive halotropism”. It was observed that Kochia individuals in the field developed horizontal roots, originating from the main tap root, which was growing toward saline regions in the soil. Under controlled conditions in greenhouse experiments, Kochia plants were grown in pots with artificial soil salinity gradients, achieved by irrigation with saline and fresh water. It was shown that plants grown in low‐salt areas developed a major horizontal root toward the higher salt concentration region in the gradient. In regions of high salinity and in the absence of a salinity gradient, roots grew vertically without a major horizontal root. The novel finding of “positive halotropism” is discussed.     

Elongation by primary lateral roots and adventitious roots during conditions of hypoxia and high ethylene concentrations

Soil flooding results in unusually low oxygen concentrations and high ethylene concentrations in the roots of plants. This gas composition had a strongly negative effect on root elongation of two Rumex species. The effect of low oxygen concentrations was less severe when roots contained aerenchymatous tissues, such as in R. palustris Sm. R. thyrsiflorus Fingerh., which has little root porosity, was much more affected. Ethylene had an even stronger effect on root elongation than hypoxia, since very small concentrations (0.1 cm³ m^?3) reduced root extension in the two species, and higher concentrations inhibited elongation more severely than did anoxia in the culture medium. Thus, ethylene contributes strongly to the negative effects of flooding on root growth. An exception may be the highly aerenchymatous, adventitious roots of R. palustris. Aerenchyma in these roots provides a low-resistance diffusion pathway for both endogenously produced ethylene and shoot-derived oxygen. This paper shows that extension by roots of R. palustris in flooded soil depends almost completely on this shoot-derived oxygen, and that aerenchyma prevents accumulation of growth-inhibiting levels of ethylene in the root.     

VASCULAR CONNECTION BETWEEN LATERAL ROOTS AND STEM IN THE OPHIOGLOSSACEAE

The vascular connection between lateral roots and stem in the Ophioglossaceae and in two leptosporangiate fern species was examined. Two types of connections were found: “gradual” connections, which resemble leaf traces in ontogeny and morphology, and “abrupt” connections, which resemble the connections between lateral roots and their parent roots. Gradual root-stem connections occur in the genera Ophioglossum and Helminthostachys and in Woodwardia virginica. They are initiated in shoot apices distal to the level where cauline xylem elements mature. They resemble leaf traces in being provascular (procambial) strands that connect the cauline stele with the future vasculature of lateral appendages. As with leaf traces, gradual connections are part of the provascular and, later, protoxylem continuity between stems and lateral appendages. Gradual connections have many features in common with leaf traces, and the term root trace is applicable to them. The order of radial maturation of the primary xylem in gradual connections varies in different parts of the connections. It is endarch near the intersection with the cauline stele and exarch where the connections intersect root steles. Gradual connections resemble the transition regions of certain seed plants where protoxylem is also continuous from stem to root and the order of maturation is found to change continuously from stem to root. Abrupt connections occur in Botrychium and Osmunda cinnamomea. They develop in shoot apices at levels where cauline xylem is mature or maturing. The mature xylem does not dedifferentiate, so provascular and protoxylem continuity of the kind found in root traces does not occur. Also, reorientation of the order of maturation does not occur in abrupt connections. Xylem connectors are found in the region where radially oriented elements of the connections abut the longitudinally oriented cauline elements. Abrupt connections resemble the connection of secondary roots with their parent root systems since xylem connectors and the lack of continuity are also features found in these vascular systems. The resemblance of the vascular pattern of the fern root trace to the transition region of seed plants suggests that the radicle is more closely comparable to the cladogenous roots of pteridophytes than hitherto supposed.     

Metabolic response of river birch and European birch and European birch roots to hypoxia

Flood tolerance of woody plants has been attributed to internal oxygen diffusion from shoot to root, metabolic adaptation within the root, or both. The purpose of this study was to compare several biochemical and physiological responses of birch roots to hypoxia in order to determine the nature of root metabolic adaptation to low oxygen tension. One-year-old seedlings of flood-tolerant river birch (Betula nigra L.) and flood-intolerant European birch (Betula pendula Roth) were transferred to solution culture, and the solutions were bubbled with air or nitrogen. After 18 days of hypoxia, total adenosine phosphate and ATP contents of river birch roots were 35% and 23% of controls, respectively, whereas those of European birch roots were 13% and 8%. Adenylate energy charge of river birch roots decreased between 6 and 12 days of hypoxia. In contrast, energy charge of European birch roots decreased after only 1 day of hypoxia. In vitro activity of cytochrome c oxidase and oxygen consumption capacity of excised roots from both birch species decreased under hypoxia. In vitro activity of alcohol dehydrogenase from roots of both species increased after 1 day of hypoxia. However, alcohol dehydrogenase activity from river birch roots increased 25-fold after 6 days of hypoxia, whereas that from European birch decreased back to control levels. Hypoxia decreased malate content of roots from both species. Metabolic adaptation within the root, rather than internal oxygen diffusion, appears to be responsible for the relative tolerance of river birch to hypoxia.     

Growth inhibition due to aged silicone rubber tubing

Growth of the obligately methylotrophic Bacterium B6/2 in continuous culture was inhibited when the mineral salts-methylamine medium was supplied through silicone rubber tubing which had been autoclaved more than 50 times. The growth inhibition was removed when the medium was supplied through new silicone rubber tubing. Growth in small-scale batch cultures was delayed or inhibited after the medium passed through the former tubing but not when it had passed through the latter. It is recommended that silicone rubber medium supply lines to chemostats are replaced periodically.     

Anaerobic column chromatography in the presence of detergents and its application to a bacterial HCN-producing enzyme

An easy method to deoxygenize protein or detergent containing buffer solutions by stirring and sparge flushing with an inert gas is described. The deoxygenation of buffers and the establishment of anaerobic conditions in a column chromatography system was followed continuously with an oxygen electrode at the outlet. All polyethylene tubes were placed inside stainless steel tubes and the interspace flushed with nitrogen. A peristalic pump with silicone rubber tubing, mounted in a small plastic box, was likewise flushed with nitrogen. By this method a very unstable cyanide-producing enzyme preparation, solubilized with Triton X-100 from a Pseudomonas species, could be fractionated on a phenyl Sepharose CL-4B column without loss of activity.     

Regulation of root anaerobiosis and carbon translocation by light and root aeration in Isoetes alpinus

The activity of alcohol dehydrogenase (ADH) was measured in corms and roots of the submerged freshwater macrophyte Isoetes alpinus Kirk. growing in situ, and related to its capacity for internal oxygen transport and to carbohydrate translocation. ADH activity was present in roots but not corms at uniform activity (0.15–0.35 × 10^?6 mol g^?1 fresh weight s^?1) over the entire plant depth range (3–7 m depth), and was intermediate to that developed in excised roots after 1‐week exposure to either dissolved oxygen at air‐saturation or to anoxia. Responses of photosynthesis and root oxygen release to light intensity confirmed that shoot‐to‐root oxygen transport saturated at similar light intensities to photosynthetic oxygen evolution, but was positive in the dark and at irradiances below the compensation point for photosynthesis, due to contributions to transport by oxygen diffusion from the external medium. Transport of ¹⁴C‐labelled photo‐assimilates to roots nevertheless ceased when intact plants were exposed to a combination of leaf darkness and root external anoxia, even when high ¹⁴C concentrations were present in shoots, but remained high when the roots were provided with external oxygen. The lack of any control over permeability of the root surface to gases in this species suggested that ADH activity and reduced translocation is most likely caused by development of hypoxic tissues in the apical tissue. These results suggest that reductions in ambient light intensity may have indirect effects on I. alpinus viability by increasing the degree of root hypoxia and impairing carbon partitioning.     

Iron plaques improve the oxygen supply to root meristems of the freshwater plant, Lobelia dortmanna

* High radial oxygen loss (ROL) from roots of aquatic plants to reduced sediments is thought to deplete the roots of oxygen and restrict the distribution of those species unable to form a barrier to oxygen loss. Metal precipitates with high iron content (Fe-plaques) frequently form on roots of aquatic plants and could create such a diffusion barrier, thereby diverting a larger proportion of downward oxygen transport to the root meristems. * To investigate whether Fe-plaques form a barrier to oxygen loss, ROL and internal oxygen concentrations were measured along the length of roots of the freshwater plant Lobelia dortmanna using platinum sleeve electrodes and Clark-type microelectrodes. * Measurements showed that ROL was indeed lower from roots with Fe-plaques than roots without plaques and that ROL declined gradually with thicker iron coating on roots. The low ROL was caused by low diffusion coefficients through root walls with Fe-plaques resulting in higher internal oxygen concentrations in the root lacunae. * By diverting a larger proportion of downward oxygen transport to root meristems in L. dortmanna, the presence of Fe-plaques should diminish root anoxia and improve survival in reduced sediments.     

Flavonoid content and antioxidant activity of Artemisia vulgaris L. “hairy” roots

We investigated the effect of Agrobacterium rhizogenes-mediated transformation on antioxidant activity of Artemisia vulgaris “hairy” roots. It appeared that transformation may increase flavonoid content as well as DPPH-scavenging activity and ability to reduce Fe³⁺ as compared to the non-transformed plants. Some “hairy” roots accumulated flavonoids up to 73.1?±?10.6?mg RE/g DW (while the amount of flavonoids in the leaves of non-transformed plants was up to 49.4?±?5.0?mg RE/g DW). DPPH-scavenging activity of some “hairy” root lines was 3–3.8 times higher than such one of the roots of the control plants. The Fe³⁺-reducing power of most transgenic root extracts exceeded such power of the extracts of the roots of the control plants. The decrease in SOD activity was found in the most “hairy” root lines compared to the control roots. The increase of flavonoid content correlated with the increase of ability of extracts to scavenge DPPH*- radical and Fe³⁺ - reducing power. No correlation between SOD activity of extracts and concentration of flavonoids was found (p?≥?0.2).Thus, transformation has led to the alteration in flavonoid accumulation and antioxidant activity in A. vulgaris “hairy” roots. Transgenic roots with high-antioxidant properties can be selected after A. rhizogenes-mediated transformation.     

Oxygen demand and supply in cell culture

Summary The oxygen demand of animal cells in microcarrier culture can be determined using a dissolved oxygen electrode. Continuous monitoring of the oxygen demand by human diploid fibroblasts shows it to be a good indicator of cell number. Furthermore, the oxygen demand of animal cells in large cultures can be supplied using membrane oxygenation using silicone rubber tubing. This method avoids the problems encountered with sparging the culture.     

Study of artemisinin and sugar accumulation in Artemisia vulgaris and Artemisia dracunculus “hairy” root cultures

We studied the effect of genetic transformation on biologically active compound (artemisinin and its co-products (ART) as well as sugars) accumulation in Artemisia vulgaris and Artemisia dracunculus “hairy” root cultures. Glucose, fructose, sucrose, and mannitol were accumulated in A. vulgaris and A. dracunculus “hairy” root lines. Genetic transformation has led in some cases to the sugar content increasing or appearing of nonrelevant for the control plant carbohydrates. Sucrose content was 1.6 times higher in A. vulgaris “hairy” root lines. Fructose content was found to be 3.4 times higher in A. dracunculus “hairy” root cultures than in the control roots. The accumulation of mannitol was a special feature of the leaves of A. vulgaris and A. dracunculus control roots. A. vulgaris “hairy” root lines differed also in ART accumulation level. The increase of ART content up to 1.02?mg/g DW in comparison with the nontransformed roots (up to 0.687?mg/g DW) was observed. Thus, Agrobacterium rhizogenes-mediated genetic transformation can be used for obtaining of A. vulgaris and A. dracunculus “hairy” root culture produced ART and sugars in a higher amount than mother plants.     

Proteoid root morphology and function inLupinus albus

Summary Current theories of phosphorus uptake by plants imply that they can augment diffusion to their root axes by the development of abundant root hairs or mycorrhizas. Some phosphorus efficient plants have root morphology with multi-branched roots and localised regions of densely packed root hairs, which we suggest is better suited to the retention of substances exuded by the roots than uptake of substances moving to the root by diffusion. Evidence of substantial exudation by the proteoid roots ofLupinus albus is presented.     

Accurate control of oxygen level in cells during culture on silicone rubber membranes with application to stem cell differentiation

Oxygen level in mammalian cell culture is often controlled by placing culture vessels in humidified incubators with a defined gas phase partial pressure of oxygen (pO_2gas). Because the cells are consuming oxygen supplied by diffusion, a difference between pO_2gas and that experienced by the cells (pO_2cell) arises, which is maximal when cells are cultured in vessels with little or no oxygen permeability. Here, we demonstrate theoretically that highly oxygen‐permeable silicone rubber membranes can be used to control pO_2cell during culture of cells in monolayers and aggregates much more accurately and can achieve more rapid transient response following a disturbance than on polystyrene and fluorinated ethylene‐propylene copolymer membranes. Cell attachment on silicone rubber was achieved by physical adsorption of fibronectin or Matrigel. We use these membranes for the differentiation of mouse embryonic stem cells to cardiomyocytes and compare the results with culture on polystyrene or on silicone rubber on top of polystyrene. The fraction of cells that are cardiomyocyte‐like increases with decreasing pO₂ only when using oxygen‐permeable silicone membrane‐based dishs, which contract on silicone rubber but not polystyrene. The high permeability of silicone rubber results in pO_2cell being equal to pO_2gas at the tissue‐membrane interface. This, together with geometric information from histological sections, facilitates development of a model from which the pO₂ distribution within the resulting aggregates is computed. Silicone rubber membranes have significant advantages over polystyrene in controlling pO_2cell, and these results suggest they are a valuable tool for investigating pO₂ effects in many applications, such as stem cell differentiation. © 2009 American Institute of Chemical Engineers Biotechnol. Prog., 2010